Large-eddy simulation of Rayleigh-B\'enard convection for extreme Rayleigh numbers

We adopt the stretched spiral vortex sub-grid model for large-eddy simulation (LES) of turbulent convection at extreme Rayleigh numbers. We simulate Rayleigh-B\'enard convection (RBC) for Rayleigh numbers ranging from $10^6$ to $10^13$ and for Prandtl numbers 0.768 and 1. We choose a box of dimensions 1:1:10 to reduce computational cost. Our LES yields Nusselt and Reynolds numbers that are in good agreement with the direct-numerical simulation (DNS) results of Iyer et al. (Proc. Natl. Acad. Sci., vol 117 (14), 2020, pp. 7594-7598), albeit with a smaller grid size and at significantly reduced computational expense. For example, in our simulations at $Ra = 10^13$, we use grids that are 1/120 times the grid-resolution as that of the DNS (Iyer et al., Proc. Natl. Acad. Sci., vol 117 (14), 2020, pp. 7594-7598). The Reynolds numbers in our simulations range from 1,000 to 200,000. Consistent with the literature, we obtain scaling relations for Nusselt and Reynolds numbers as $Nu \sim Ra^{0.322}$ and $Re \sim Ra^{0.502}$. We also perform LES of RBC with periodic side-walls, for which we obtain the corresponding scaling exponents as 0.343 and 0.477 respectively. Our LES is a promising tool to push simulations of thermal convection to extreme Rayleigh numbers, and hence enable us to test the transition to ultimate convection regime.Comment: 26 pages, 15 figures. Submitted to Journal of Fluid Mechanic

Transfer of knowledge from model organisms to evolutionarily distant non-model organisms: The coral Pocillopora damicornis membrane signaling receptome

With the ease of gene sequencing and the technology available to study and manipulate non-model organisms, the extension of the methodological toolbox required to translate our understanding of model organisms to non-model organisms has become an urgent problem. For example, mining of large coral and their symbiont sequence data is a challenge, but also provides an opportunity for understanding functionality and evolution of these and other non-model organisms. Much more information than for any other eukaryotic species is available for humans, especially related to signal transduction and diseases. However, the coral cnidarian host and human have diverged over 700 million years ago and homologies between proteins in the two species are therefore often in the gray zone, or at least often undetectable with traditional BLAST searches. We introduce a two-stage approach to identifying putative coral homologues of human proteins. First, through remote homology detection using Hidden Markov Models, we identify candidate human homologues in the cnidarian genome. However, for many proteins, the human genome alone contains multiple family members with similar or even more divergence in sequence. In the second stage, therefore, we filter the remote homology results based on the functional and structural plausibility of each coral candidate, shortlisting the coral proteins likely to have conserved some of the functions of the human proteins. We demonstrate our approach with a pipeline for mapping membrane receptors in humans to membrane receptors in corals, with specific focus on the stony coral, P. damicornis. More than 1000 human membrane receptors mapped to 335 coral receptors, including 151 G protein coupled receptors (GPCRs). To validate specific sub-families, we chose opsin proteins, representative GPCRs that confer light sensitivity, and Toll-like receptors, representative non-GPCRs, which function in the immune response, and their ability to communicate with microorganisms. Through detailed structure-function analysis of their ligand-binding pockets and downstream signaling cascades, we selected those candidate remote homologues likely to carry out related functions in the corals. This pipeline may prove generally useful for other non-model organisms, such as to support the growing field of synthetic biology

Outcome of a workshop

International audience; In tackling agricultural challenges, policy-makers in sub-Saharan Africa (SSA) have increasingly considered genetically modified (GM) crops as a potential tool to increase productivity and to improve product quality. Yet, as elsewhere in the world, the adoption of GM crops in SSA has been marked by controversy, encompassing not only the potential risks to animal and human health, and to the environment, but also other concerns such as ethical issues, public participation in decision-making, socio-economic factors and intellectual property rights. With these non-scientific factors complicating an already controversial situation, disseminating credible information to the public as well as facilitating stakeholder input into decision-making is essential. In SSA, there are various and innovative risk communication approaches and strategies being developed, yet a comprehensive analysis of such data is missing. This gap is addressed by giving an overview of current strategies, identifying similarities and differences between various country and institutional approaches and promoting a way forward, building on a recent workshop with risk communicators working in SSA

Solid-State Recycling of Light Metal Reinforced Inclusions by Equal Channel Angular Pressing: A Review

Solid-state recycling of light metals reinforced inclusions through hot Equal Channel Angular Pressing (ECAP) is performed to directly recycle metal scraps and reduce cost of material in engineering applications. The ECAP is one of the most important method in severe plastic deformation (SPD) that can convert light metals into finished products. This paper reviews several experimental and numerical works that have been done to investigate the effects of the ECAP parameters such as die angles, material properties, outer corner angle, friction coefficient, temperature, size of chips, pressing force, ram speed and direct effects of number of passes on the strain distributions. It also includes the performance enhancement of aluminium matrix composite reinforced ceramic-based particles that derived from direct recycled aluminium chips for sustainable manufacturing practices

Chromosomal instability drives metastasis through a cytosolic DNA response

Chromosomal instability is a hallmark of cancer that results from ongoing errors in chromosome segregation during mitosis. Although chromosomal instability is a major driver of tumour evolution, its role in metastasis has not been established. Here we show that chromosomal instability promotes metastasis by sustaining a tumour cell-autonomous response to cytosolic DNA. Errors in chromosome segregation create a preponderance of micronuclei whose rupture spills genomic DNA into the cytosol. This leads to the activation of the cGAS-STING (cyclic GMP-AMP synthase-stimulator of interferon genes) cytosolic DNA-sensing pathway and downstream noncanonical NF-κB signalling. Genetic suppression of chromosomal instability markedly delays metastasis even in highly aneuploid tumour models, whereas continuous chromosome segregation errors promote cellular invasion and metastasis in a STING-dependent manner. By subverting lethal epithelial responses to cytosolic DNA, chromosomally unstable tumour cells co-opt chronic activation of innate immune pathways to spread to distant organs

Conducting Health Research in Korean American Churches: Perspectives from Church Leaders

Korean Americans experience many challenges to obtaining adequate health care coverage and access to needed services. Because a large proportion of Korean Americans attend churches on a regular basis, churches may be a promising venue where health programs can be delivered. In order to gain an in-depth understanding of Korean American churches with respect to conducting future health intervention research, we conducted exploratory interviews and focus groups with 58 leaders from 23 Korean American churches and three community organizations. From these interviews and focus groups, we found that Korean churches and church leaders seek to meet a variety of social and health needs of their congregation and their surrounding community. Several leaders have stated that assisting with social and medical needs of their members is an important component of their current ministry. They described profound health needs of their congregations and have suggested various ways in which the university can partner with the local churches to help address these needs through research. Additionally, they described various resources churches can provide to researchers such as: their personal assistance, church volunteer base, church facility, and church network and contacts. Our findings suggest that Korean churches have a high potential to serve an important role in the health of Korean Americans. On the basis of the promising results of the present study, we are planning to conduct a cross sectional survey of Korean church leaders and members in Los Angeles County to substantiate our findings in a larger representative sample

An Association of Cancer Physicians' strategy for improving services and outcomes for cancer patients.

The Association of Cancer Physicians in the United Kingdom has developed a strategy to improve outcomes for cancer patients and identified the goals and commitments of the Association and its members.The ACP is very grateful to all of its members who have expressed views on the development of the strategy and to the sponsors of our workshops and publications, especially Cancer Research UK and Macmillan Cancer SupportThis is the final version of the article. It was first available from Cancer Intelligence via http://dx.doi.org/10.3332/ecancer.2016.60