FKBP52 is involved in the regulation of SOCE channels in the human platelets and MEG 01 cells

AbstractImmunophilins are FK506-binding proteins that have been involved in the regulation of calcium homeostasis, either by modulating Ca2+ channels located in the plasma membrane or in the rough endoplasmic reticulum (RE). We have investigated whether immunophilins would participate in the regulation of stored-operated Ca2+ entry (SOCE) in human platelets and MEG 01. Both cell types were loaded with fura-2 for determining cytosolic calcium concentration changes ([Ca2+]c), or stimulated and fixed to evaluate the protein interaction profile by performing immunoprecipitation and western blotting. We have found that incubation of platelets with FK506 increases Ca2+ mobilization. Thapsigargin (TG)-evoked, Thr-evoked SOCE and TG-evoked Mn2+ entry resulted in significant reduction by treatment of platelets with immunophilin antagonists. We confirmed by immunoprecipitation that immunophilins interact with transient receptor potential channel 1 (TRPC1) and Orai1 in human platelets. FK506 and rapamycin reduced the association between TRPC1 and Orai1 with FK506 binding protein (52) (FKBP52) in human platelets, and between TRPC1 and the type II IP3R, which association is known to be crucial for the maintenance of SOCE in human platelets. FKBP52 role in SOCE activation was confirmed by silencing FKBP52 using SiRNA FKBP52 in MEG 01 as demonstrated by single cell configuration imaging technique. TRPC1 silencing and depletion of cell of TRPC1 and FKBP52 simultaneously, impair activation of SOCE evoked by TG in MEG 01. Finally, in MEG 01 incubated with FK506 we observed a reduction in TRPC1/FKBP52 coupling, and similarly, FKBP52 silencing reduced the association between IP3R type II and TRPC1 during SOCE. All together, these results demonstrate that immunophilins participate in the regulation of SOCE in human platelets

A genetic algorithm for berth allocation and quay crane assignment

13th Ibero-American Conference on Artificial Intelligence. IBERAMIA 2012, Cartagena de Indias, Colombia. 13-16 November 2012The final publication is available at Springer via http://dx.doi.org/10.1007/978-3-642-34654-5_61Container terminals are facilities where cargo containers are transshipped between different transport vehicles, for onward transportation. They are open systems that carry out a large number of different combinatorial problems that can be solved by means of Artificial Intelligence techniques. In this work, we focus our attention on scheduling a number of incoming vessels by assigning to each a berthing position, a mooring time and a number of Quay Cranes. This problem is known as the Berthing Allocation and Quay Crane Assignment problem. To formulate the problem, we first propose a mixed integer linear programming model to minimize the total weighted service time of the incoming vessels. Then, a meta-heuristic algorithm (Genetic Algorithm (GA)) is presented for solving the proposed problem. Computational experiments are performed to evaluate the effectiveness and efficiency of the proposed metho

TRPC6 channels are required for proliferation, migration and invasion of breast cancer cell lines by modulation of Orai1 and Orai3 surface exposure

Transient receptor potential channels convey signaling information from a number of stimuli to a wide variety of cellular functions, mainly by inducing changes in cytosolic Ca2+ concentration. Different members of the TRPC, TRPM and TRPV subfamilies have been reported to play a role in tumorigenesis. Here we show that the estrogen receptor positive and triple negative breast cancer cell lines, MCF7 and MDA-MB-231, respectively, exhibit enhanced expression of the TRPC6 channel as compared to the non-tumoral MCF10A cell line. In vitro TRPC6 knockdown using shRNA impaired MCF7 and MDA-MB-231 cell proliferation, migration and invasion detected by BrdU incorporation, wound healing and Boyden chamber assays, respectively. Using RNAi-mediated TRPC6 silencing as well as overexpression of the pore-dead dominant-negative TRPC6 mutant we have found that TRPC6 plays a relevant role in the activation of store-operated Ca2+ entry in the breast cancer cell lines but not in non-tumoral breast cells. Finally, we have found that TRPC6 interacts with Orai1 and Orai3 in MCF7 and MDA-MB-231 cells and is required for the translocation of Orai1 and Orai3 to the plasma membrane in MDA-MB-231 and MCF7 cells, respectively, upon Ca2+ store depletion. These findings introduce a novel mechanism for the modulation of Ca2+ influx and the development of different cancer hallmarks in breast cancer cells

Caenorhabditis elegans AGXT-1 is a mitochondrial and temperature-adapted ortholog of peroxisomal human AGT1: New insights into between-species divergence in glyoxylate metabolism

In humans, glyoxylate is an intermediary product of metabolism, whose concentration is finely balanced. Mutations in peroxisomal alanine:glyoxylate aminotransferase (hAGT1) cause primary hyperoxaluria type 1 (PH1), which results in glyoxylate accumulation that is converted to toxic oxalate. In contrast, glyoxylate is used by the nematode Caenorhabditis elegans through a glyoxylate cycle to by-pass the decarboxylation steps of the tricarboxylic acid cycle and thus contributing to energy production and gluconeogenesis from stored lipids. To investigate the differences in glyoxylate metabolism between humans and C. elegans and to determine whether the nematode might be a suitable model for PH1, we have characterized here the predicted nematode ortholog of hAGT1 (AGXT-1) and compared its molecular properties with those of the human enzyme. Both enzymes form active PLP-dependent dimers with high specificity towards alanine and glyoxylate, and display similar three-dimensional structures. Interestingly, AGXT-1 shows 5-fold higher activity towards the alanine/glyoxylate pair than hAGT1. Thermal and chemical stability of AGXT-1 is lower than that of hAGT1, suggesting temperature-adaptation of the nematode enzyme linked to the lower optimal growth temperature of C. elegans. Remarkably, in vivo experiments demonstrate the mitochondrial localization of AGXT-1 in contrast to the peroxisomal compartmentalization of hAGT1. Our results support the view that the different glyoxylate metabolism in the nematode is associated with the divergent molecular properties and subcellular localization of the alanine:glyoxylate aminotransferase activity.This work was supported by the Spanish Ministry of Science and Innovation (CSD2009-00088, BIO2012-34937 and SAF2011-23933), the Junta de Andalucia (P11-CTS-7187), and the Oxalosis and Hyperoxaluria Foundation (OHF2012 to B.C.). A.L.P. acknowledges a Ramon y Cajal research contract (RyC2009-04147) from the Spanish Ministry of Science and Innovation and the University of Granada. N. M-T acknowledges a FPI predoctoral fellowship from the Spanish Ministry of Science and Innovation. A.C.C. and N.T. were supported by the grant IOS-1353845 from the National Science Foundation (NSF). N.T. acknowledges the Tetelman Fellowship for International Research on the Sciences awarded by Yale University.Peer Reviewe

Time-Varying Emulator for Short and Long-Term Analysis of Coastal Flood Hazard Potential

Rising seas coupled with ever increasing coastal populations present the potential for significant social and economic loss in the 21st century. Relatively short records of the full multidimensional space contributing to total water level coastal flooding events (astronomic tides, sea level anomalies, storm surges, wave run‐up, etc.) result in historical observations of only a small fraction of the possible range of conditions that could produce severe flooding. The Time‐varying Emulator for Short‐ and Long‐Term analysis of coastal flood hazard potential is presented here as a methodology capable of producing new iterations of the sea‐state parameters associated with the present‐day Pacific Ocean climate to simulate many synthetic extreme compound events. The emulator utilizes weather typing of fundamental climate drivers (sea surface temperatures, sea level pressures, etc.) to reduce complexity and produces new daily synoptic weather chronologies with an auto‐regressive logistic model accounting for conditional dependencies on the El Niño Southern Oscillation, the Madden‐Julian Oscillation, seasonality, and the prior two days of weather progression. Joint probabilities of sea‐state parameters unique to simulated weather patterns are used to create new time series of the hypothetical components contributing to synthetic total water levels (swells from multiple directions coupled with water levels due to wind setup, temperature anomalies, and tides). The Time‐varying Emulator for Short‐ and Long‐Term analysis of coastal flood hazard potential reveals the importance of considering the multivariate nature of extreme coastal flooding, while progressing the ability to incorporate large‐scale climate variability into site specific studies assessing hazards within the context of predicted climate change in the 21st century

Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads.

As metagenomic studies move to increasing numbers of samples, communities like the human gut may benefit more from the assembly of abundant microbes in many samples, rather than the exhaustive assembly of fewer samples. We term this approach leaderboard metagenome sequencing. To explore protocol optimization for leaderboard metagenomics in real samples, we introduce a benchmark of library prep and sequencing using internal references generated by synthetic long-read technology, allowing us to evaluate high-throughput library preparation methods against gold-standard reference genomes derived from the samples themselves. We introduce a low-cost protocol for high-throughput library preparation and sequencing