1,253 research outputs found
Multiprotein DNA looping
DNA looping plays a fundamental role in a wide variety of biological
processes, providing the backbone for long range interactions on DNA. Here we
develop the first model for DNA looping by an arbitrarily large number of
proteins and solve it analytically in the case of identical binding. We uncover
a switch-like transition between looped and unlooped phases and identify the
key parameters that control this transition. Our results establish the basis
for the quantitative understanding of fundamental cellular processes like DNA
recombination, gene silencing, and telomere maintenance.Comment: 11 pages, 4 figure
Conservation Laws in Smooth Particle Hydrodynamics: the DEVA Code
We describe DEVA, a multistep AP3M-like-SPH code particularly designed to
study galaxy formation and evolution in connection with the global cosmological
model. This code uses a formulation of SPH equations which ensures both energy
and entropy conservation by including the so-called \bn h terms. Particular
attention has also been paid to angular momentum conservation and to the
accuracy of our code. We find that, in order to avoid unphysical solutions, our
code requires that cooling processes must be implemented in a non-multistep
way.
We detail various cosmological simulations which have been performed to test
our code and also to study the influence of the \bn h terms. Our results
indicate that such correction terms have a non-negligible effect on some
cosmological simulations, especially on high density regions associated either
to shock fronts or central cores of collapsed objects. Moreover, they suggest
that codes paying a particular attention to the implementation of conservation
laws of physics at the scales of interest, can attain good accuracy levels in
conservation laws with limited computational resources.Comment: 36 pages, 10 figures. Accepted for publication in The Astrophysical
Journa
Variations in soil chemical and physical properties explain basin-wide Amazon forest soil carbon concentrations
We investigate the edaphic, mineralogical and climatic controls of soil organic carbon (SOC) concentration utilising data from 147 primary forest soils (0â30âcm depth) sampled in eight different countries across the Amazon Basin. Sampled across 14 different World Reference Base soil groups, our data suggest that stabilisation mechanism varies with pedogenetic level. Specifically, although SOC concentrations in Ferralsols and Acrisols were best explained by simple variations in clay content â this presumably being due to their relatively uniform kaolinitic mineralogy â this was not the case for less weathered soils such as Alisols, Cambisols and Plinthosols for which interactions between Al species, soil pH and litter quality are argued to be much more important. Although for more strongly weathered soils the majority of SOC is located within the aggregate fraction, for the less weathered soils most of the SOC is located within the silt and clay fractions. It thus seems that for highly weathered soils SOC storage is mostly influenced by surface area variations arising from clay content, with physical protection inside aggregates rendering an additional level of protection against decomposition. On the other hand, most of the SOC in less weathered soils is associated with the precipitation of aluminiumâcarbon complexes within the fine soil fraction, with this mechanism enhanced by the presence of high levels of aromatic, carboxyl-rich organic matter compounds. Also examined as part of this study were a relatively small number of arenic soils (viz. Arenosols and Podzols) for which there was a small but significant influence of clay and silt content variations on SOM storage, with fractionation studies showing that particulate organic matter may account for up to 0.60 of arenic soil SOC. In contrast to what were in all cases strong influences of soil and/or litter quality properties, after accounting for these effects neither wood productivity, above-ground biomass nor precipitation/temperature variations were found to exert any significant influence on SOC stocks. These results have important implications for our understanding of how Amazon forest soils are likely to respond to ongoing and future climate changes
A Multilayer Approach to Fabricate Bioactive Glass Coatings on Ti Alloys
Glasses in the system Si-Ca-Na-Mg-P-K-O with thermal expansion coefficients close to that of Ti6Al4V were used to coat the titanium alloy by a simple enameling technique. Firings were done in air at temperatures between 800 and 840 C and times up to 1 minute. Graded compositions were obtained by firing multilayered glass coatings. Hydroxyapatite (HA) particles were mixed with the glass powder and the mixture was placed on the outer surface of the coatings to render them more bioactive. Coatings with excellent adhesion to the substrate and able to form apatite when immersed in a simulated body fluid (SBF) can be fabricated by this methodology
Psiconeurociencia y arquetipos: construyendo un diĂĄlogo entre PsicologĂa AnalĂtica y neurociencia
The Spanish SpaceWeather Service SeNMEs. A Case Study on the Sun-Earth Chain
ComunicaciĂłn presentada en el Coimbra Solar Physics Meeting, 5-9 October 2015, Coimbra, PortugalThe Spanish Space Weather Service SeNMEs, www.senmes.es, is a portal
created by the SRG-SW of the Universidad de AlcalĂĄ, Spain, to meet societal needs
of near real-time space weather services. This webpage-portal is divided in different
sections to fulfill users needs about space weather effects: radio blackouts, solar energetic
particle events, geomagnetic storms and presence of geomagnetically induced
currents.
In less than one year of activity, this service has released a daily report concerning
the solar current status and interplanetary medium, informing about the chances of a
solar perturbation to hit the Earthâs environment. There are also two different forecasting
tools for geomagnetic storms, and a daily ionospheric map. These tools allow us
to nowcast a variety of solar eruptive events and forecast geomagnetic storms and their
recovery, including a new local geomagnetic index, LDiñ, along with some specific new
scaling.
In this paper we also include a case study analysed by SeNMEs. Using different
high resolution and cadence data from space-borne solar telescopes SDO, SOHO and
GOES, along with ionospheric and geomagnetic data, we describe the Sun-Earth feature
chain for the event.MINECO project AYA2013-47735PPeer reviewe
wild birds in Serbia during 2012: first isolation and characterisation of WNV strains from Serbia
Monitoring West Nile virus (WNV) infection i
The influence of C3 and C4 vegetation on soil organic matter dynamics in contrasting semi-natural tropical ecosystems
This is a freely-available open access publication. Please cite the published version which is available via the DOI link in this record.Variations in the carbon isotopic composition of soil organic matter (SOM) in bulk and fractionated samples were used to assess the influence of C3 and C4 vegetation on SOM dynamics in semi-natural tropical ecosystems sampled along a precipitation gradient in West Africa. Differential patterns in SOM dynamics in C3/C4 mixed ecosystems occurred at various spatial scales. Relative changes in C/ N ratios between two contrasting SOM fractions were used to evaluate potential site-scale differences in SOM dynamics between C3- and C4-dominated locations. These differences were strongly controlled by soil texture across the precipitation gradient, with a function driven by bulk ÎŽ 13C and sand content explaining 0.63 of the observed variability. The variation of ÎŽ 13C with soil depth indicated a greater accumulation of C3-derived carbon with increasing precipitation, with this trend also being strongly dependant on soil characteristics. The influence of vegetation thickening on SOM dynamics was also assessed in two adjacent, but structurally contrasting, transitional ecosystems occurring on comparable soils to minimise the confounding effects posed by climatic and edaphic factors. Radiocarbon analyses of sand-size aggregates yielded relatively short mean residence times (Ï ) even in deep soil layers, while the most stable SOM fraction associated with silt and clay exhibited shorter Ï in the savanna woodland than in the neighbouring forest stand. These results, together with the vertical variation observed in ÎŽ 13C values, strongly suggest that both ecosystems are undergoing a rapid transition towards denser closed canopy formations. However, vegetation thickening varied in intensity at each site and exerted contrasting effects on SOM dynamics. This study shows that the interdependence between biotic and abiotic factors ultimately determine whether SOM dynamics of Published by Copernicus Publications on behalf of the European Geosciences Union. 5042 G. Saiz et al.: Influence of C3/C4 on SOM in tropical biomes C3- and C4-derived vegetation are at variance in ecosystems where both vegetation types coexist. The results highlight the far-reaching implications that vegetation thickening may have for the stability of deep SOM.UK National Environment Research CouncilAustralian Institute of Nuclear Science and Engineering (AINSE Ltd
Biome-specific effects of nitrogen and phosphorus on the photosynthetic characteristics of trees at a forest-savanna boundary in Cameroon
Journal ArticleThe final publication is available at Springer via http://dx.doi.org/10.1007/s00442-015-3250-5Photosynthesis/nutrient relationships of proximally growing forest and savanna trees were determined in an ecotonal region of Cameroon (Africa). Although area-based foliar N concentrations were typically lower for savanna trees, there was no difference in photosynthetic rates between the two vegetation formation types. Opposite to N, area-based P concentrations wereâon averageâslightly lower for forest trees; a dependency of photosynthetic characteristics on foliar P was only evident for savanna trees. Thus savanna trees use N more efficiently than their forest counterparts, but only in the presence of relatively high foliar P. Along with some other recent studies, these results suggest that both N and P are important modulators of woody tropical plant photosynthetic capacities, influencing photosynthetic metabolism in different ways that are also biome specific. Attempts to find simple unifying equations to describe woody tropical vegetation photosynthesis-nutrient relationships are likely to meet with failure, with ecophysiological distinctions between forest and savanna requiring acknowledgement.Natural Environment Research Council (NERC) TROBIT consortiumRoyal Society - University Research Fellowshi
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