Analysis of exome data for 4293 trios suggests GPI-anchor biogenesis defects are a rare cause of developmental disorders.

Over 150 different proteins attach to the plasma membrane using glycosylphosphatidylinositol (GPI) anchors. Mutations in 18 genes that encode components of GPI-anchor biogenesis result in a phenotypic spectrum that includes learning disability, epilepsy, microcephaly, congenital malformations and mild dysmorphic features. To determine the incidence of GPI-anchor defects, we analysed the exome data from 4293 parent-child trios recruited to the Deciphering Developmental Disorders (DDD) study. All probands recruited had a neurodevelopmental disorder. We searched for variants in 31 genes linked to GPI-anchor biogenesis and detected rare biallelic variants in PGAP3, PIGN, PIGT (n=2), PIGO and PIGL, providing a likely diagnosis for six families. In five families, the variants were in a compound heterozygous configuration while in a consanguineous Afghani kindred, a homozygous c.709G>C; p.(E237Q) variant in PIGT was identified within 10-12 Mb of autozygosity. Validation and segregation analysis was performed using Sanger sequencing. Across the six families, five siblings were available for testing and in all cases variants co-segregated consistent with them being causative. In four families, abnormal alkaline phosphatase results were observed in the direction expected. FACS analysis of knockout HEK293 cells that had been transfected with wild-type or mutant cDNA constructs demonstrated that the variants in PIGN, PIGT and PIGO all led to reduced activity. Splicing assays, performed using leucocyte RNA, showed that a c.336-2A>G variant in PIGL resulted in exon skipping and p.D113fs*2. Our results strengthen recently reported disease associations, suggest that defective GPI-anchor biogenesis may explain ~0.15% of individuals with developmental disorders and highlight the benefits of data sharing

Benign external hydrocephalus: a review, with emphasis on management

Benign external hydrocephalus in infants, characterized by macrocephaly and typical neuroimaging findings, is considered as a self-limiting condition and is therefore rarely treated. This review concerns all aspects of this condition: etiology, neuroimaging, symptoms and clinical findings, treatment, and outcome, with emphasis on management. The review is based on a systematic search in the Pubmed and Web of Science databases. The search covered various forms of hydrocephalus, extracerebral fluid, and macrocephaly. Studies reporting small children with idiopathic external hydrocephalus were included, mostly focusing on the studies reporting a long-term outcome. A total of 147 studies are included, the majority however with a limited methodological quality. Several theories regarding pathophysiology and various symptoms, signs, and clinical findings underscore the heterogeneity of the condition. Neuroimaging is important in the differentiation between external hydrocephalus and similar conditions. A transient delay of psychomotor development is commonly seen during childhood. A long-term outcome is scarcely reported, and the results are varying. Although most children with external hydrocephalus seem to do well both initially and in the long term, a substantial number of patients show temporary or permanent psychomotor delay. To verify that this truly is a benign condition, we suggest that future research on external hydrocephalus should focus on the long-term effects of surgical treatment as opposed to conservative management

Genetic and cytological diversity in cherry tree accessions ( Eugenia involucrata DC) in Rio Grande do Sul

This study aimed to evaluate the genetic and cytological diversity and stability of 35 cherry tree accessions collected in Rio Grande do Sul. We used 15 RAPD (Random Amplified Polymorphic DNA) molecular markers and performed cytological analysis and number count of anthers. Analyses of genetic diversity allowed the separation of accessions into four groups, resulting in an average of 8.93 bands per primer amplified, 7.89 polymorphic bands, 88.08% of polymorphism and 86% of genetic similarity. Cytological analyses of gametic cells allowed for the characterization of accessions as diploids with n=11. In these, the average of meiotic cells considered normal was 82.12%; average pollen viability was 92.44% and in vitro germination was 40.26%; the average number of anthers was 161.85 anthers/flowers. Therefore, the accessions evaluated showed high genetic similarity and cytological stability and can be used in commercial plantations or hybridizations

Improving Access to Information through Conceptual Classification

Overwhelming the users with large amount of information on the Web has resulted in users' inability to find the information and their dissatisfaction with available information searching and filtering systems. On the other hand the information is distributed over many websites and a large part of it (for example news) is updated frequently. Keeping track of the changes in huge amount of information is a real problem for users. Due to the great impact the information has on people's lives and business decision-making much research has been done on the efficient ways of accessing and analyzing the information. This thesis will propose a conceptual classification method and ranking of the information in order to provide better user access to a wider range of information it also provides the information that may help in analyzing the global trends in various fields. In order to demonstrate the effectiveness of this method a feed aggregator system has been developed and evaluated through this thesis. To improve the flexibility and adaptability of the system we have adopted the agent-oriented software engineering architecture that has also helped facilitating the development process. In addition since the system deals with storing and processing large amounts of information that requires a large number of resources the cloud platform service has been used as a platform for deploying the application. The result was a cloud based software service that benefited from the unlimited on-demand resources. To take advantage of the available features of public cloud computing platforms those supporting the agent-oriented design the multi-agent system was implemented by mapping the agents to the cloud computing services. In addition the cloud queue service that is provided by some cloud providers such as Microsoft and Amazon was used to implement indirect communication among the agents in the multi-agent system.

Unfolding system-environment correlation in open quantum systems: Revisiting master equations and the Born approximation

Understanding system-environment correlations in open quantum systems is vital for various quantum information and technology applications. However, these correlations are often overlooked or hidden in derivations of open-quantum-system master equations, especially when applying the Born approximation. To address this issue, given a microscopic model, we demonstrate how to retain system-environment correlation within commonly used master equations, such as the Markovian Lindblad, Redfield, second-order time convolutionless, second-order Nakajima-Zwanzig, and second-order universal Lindblad-like equations. We show that each master equation corresponds to a particular approximation on the system-environment correlation operator. In particular, our analysis exposes the form of the hidden system-environment correlation in the Markovian Lindblad equation derived using the Born approximation. We also identify that the processes leading to the Redfield equation yield an inaccurate initial-time system-environment correlation approximation. By fixing this problem, we propose a corrected Redfield equation with an improved prediction for early stages of the time evolution. We further illustrate our results in two examples, which imply that the second-order universal Lindblad-like equation captures correlation more accurately than the other standard master equations. </p

Unfolding system-environment correlation in open quantum systems: Revisiting master equations and the Born approximation

Understanding system-environment correlations in open quantum systems is vital for various quantum information and technology applications. However, these correlations are often overlooked or hidden in derivations of open-quantum-system master equations, especially when applying the Born approximation. To address this issue, given a microscopic model, we demonstrate how to retain system-environment correlation within commonly used master equations, such as the Markovian Lindblad, Redfield, second-order time convolutionless, second-order Nakajima-Zwanzig, and second-order universal Lindblad-like equations. We show that each master equation corresponds to a particular approximation on the system-environment correlation operator. In particular, our analysis exposes the form of the hidden system-environment correlation in the Markovian Lindblad equation derived using the Born approximation. We also identify that the processes leading to the Redfield equation yield an inaccurate initial-time system-environment correlation approximation. By fixing this problem, we propose a corrected Redfield equation with an improved prediction for early stages of the time evolution. We further illustrate our results in two examples, which imply that the second-order universal Lindblad-like equation captures correlation more accurately than the other standard master equations. </p