276 research outputs found

    Early Arrival of New World Species Enriching the Biological Assemblage of the Santi Quattro Coronati Complex (Rome, Italy)

    Get PDF
    This paper reports the archaeobotanical and archaeozoological data from a disposal pit, whose use started after the partial closure of a staircase, and from a mortar surface within a former porch in the Santi Quattro Coronati complex in Rome, Italy. The two contexts were in use in the Early Modern Age, when the complex served as a cardinal seat. The element that distinguishes the Santi Quattro Coronati from other contemporaneous contexts is the presence of New World species, until now only hypothesized based on a letter sent by the first resident bishop in Santo Domingo to Lorenzo Pucci, then cardinal with the titulus of the Santi Quattro Coronati. Pumpkin seeds (Cucurbita pepo and C. maxima/moschata) were found in the pit, while a pelvis of guinea pig (Cavia porcellus) was found in a former porch. Numerous archaeobotanical remains preserved by mummification, identified mostly as food, and many archaeozoological specimens were found in the pit. Based on the data, it is hypothesized that the pit was used mainly as a deposit for table waste. The results as a whole help towards the investigation of the eating customs and daily habits of a Renaissance high-status clerical community

    Discovering Plum, Watermelon and Grape Cultivars Founded in a Middle Age Site of Sassari (Sardinia, Italy) through a Computer Image Analysis Approach

    Get PDF
    The discovery of several waterlogged plant remains in a Middle Ages context (1330–1360 AD) in Sassari (NS, Sardinia, Italy) enabled the characterisation of archaeological plum fruit stones and watermelon and grape seeds through computer image analysis. Digital seed/endocarp images were acquired by a flatbed scanner and processed and analysed by applying computerised image analysis techniques. The morphometric data were statistically elaborated using stepwise linear discriminant analysis (LDA), allowing comparisons among archaeological remains, wild populations and autochthonous cultivars. Archaeological samples of plum were compared with 21 autochthonous cultivars of Prunus domestica from Sardinia, while archaeological watermelon seeds were compared with 36 seed lots of Citrullus from Europe, Africa and Asia. Moreover, archaeological grape seeds were compared with 51 autochthonous traditional cultivars of Vitis vinifera subsp. vinifera from Sardinia, 16 cultivars from Tuscany, six cultivars from Liguria, and eight cultivars from Catalonia (Spain). Archaeological plum remains showed morphological affinity with five cultivars of Sardinia. Seed features of the archaeological watermelon remains demonstrated affiliation with a proper sweet dessert watermelon, Citrullus lanatus, and similarity with some Sardinian cultivars. Regarding the archaeological remains of grape, morphometric comparisons showed a high similarity with autochthonous cultivars from Catalonia and Liguria. This study provides new information about ancient fruit cultivated and consumed during the Middle Ages in Sardinia

    Migraine and cluster headache show impaired neurosteroids patterns

    Get PDF
    Background: Perturbation of neuronal excitability contributes to migraine. Neurosteroids modulate the activity of γ-aminobutyric acid A and N-methyl-d-aspartate receptors, and might be involved in the pathogenesis of migraine. Here, we measured plasma levels of four neurosteroids, i.e., allopregnanolone, epiallopregnanolone, dehydroepiandrosterone and deydroepiandrosterone sulfate, in patients affected by episodic migraine, chronic migraine, or cluster headache. Methods: Nineteen female patients affected by episodic migraine, 51 female patients affected by chronic migraine, and 18 male patients affected by cluster headache were recruited to the study. Sex- and age-matched healthy control subjects (31 females and 16 males) were also recruited. Patients were clinically characterized by using validated questionnaires. Plasma neurosteroid levels were measured by liquid chromatography-tandem mass spectrometry. Results: We found disease-specific changes in neurosteroid levels in our study groups. For example, allopregnanolone levels were significantly increased in episodic migraine and chronic migraine patients than in control subjects, whereas they were reduced in patients affected by cluster headache. Dehydroepiandrosterone and dehydroepiandrosterone sulfate levels were reduced in patients affected by chronic migraine, but did not change in patients affected by cluster headache. Conclusion: We have shown for the first time that large and disease-specific changes in circulating neurosteroid levels are associated with chronic headache disorders, raising the interesting possibility that fluctuations of neurosteroids at their site of action might shape the natural course of migraine and cluster headache. Whether the observed changes in neurosteroids are genetically determined or rather result from exposure to environmental or intrinsic stressors is unknown. This might also be matter for further investigation because stress is a known triggering factor for headache attacks in both migraineurs and cluster headache patients

    Practical and clinical utility of non-invasive vagus nerve stimulation (nVNS) for the acute treatment of migraine. A post hoc analysis of the randomized, sham-controlled, double-blind PRESTO trial

    Get PDF
    Background: The PRESTO study of non-invasive vagus nerve stimulation (nVNS; gammaCore®) featured key primary and secondary end points recommended by the International Headache Society to provide Class I evidence that for patients with an episodic migraine, nVNS significantly increases the probability of having mild pain or being pain-free 2 h post stimulation. Here, we examined additional data from PRESTO to provide further insights into the practical utility of nVNS by evaluating its ability to consistently deliver clinically meaningful improvements in pain intensity while reducing the need for rescue medication. Methods: Patients recorded pain intensity for treated migraine attacks on a 4-point scale. Data were examined to compare nVNS and sham with regard to the percentage of patients who benefited by at least 1 point in pain intensity. We also assessed the percentage of attacks that required rescue medication and pain-free rates stratified by pain intensity at treatment initiation. Results: A significantly higher percentage of patients who used acute nVNS treatment (n = 120) vs sham (n = 123) reported a ≥ 1-point decrease in pain intensity at 30 min (nVNS, 32.2%; sham, 18.5%; P = 0.020), 60 min (nVNS, 38.8%; sham, 24.0%; P = 0.017), and 120 min (nVNS, 46.8%; sham, 26.2%; P = 0.002) after the first attack. Similar significant results were seen when assessing the benefit in all attacks. The proportion of patients who did not require rescue medication was significantly higher with nVNS than with sham for the first attack (nVNS, 59.3%; sham, 41.9%; P = 0.013) and all attacks (nVNS, 52.3%; sham, 37.3%; P = 0.008). When initial pain intensity was mild, the percentage of patients with no pain after treatment was significantly higher with nVNS than with sham at 60 min (all attacks: nVNS, 37.0%; sham, 21.2%; P = 0.025) and 120 min (first attack: nVNS, 50.0%; sham, 25.0%; P = 0.018; all attacks: nVNS, 46.7%; sham, 30.1%; P = 0.037). Conclusions: This post hoc analysis demonstrated that acute nVNS treatment quickly and consistently reduced pain intensity while decreasing rescue medication use. These clinical benefits provide guidance in the optimal use of nVNS in everyday practice, which can potentially reduce use of acute pharmacologic medications and their associated adverse events. Trial registration: ClinicalTrials.gov identifier: NCT02686034

    Palaeoenvironmental reconstruction of a Phoenician site: archaeobotany at Motya (Sicily, Italy)

    Get PDF
    La presente tesi di dottorato riguarda le analisi archeobotaniche dei materiali provenienti dal sito archeologico di Mozia, una piccola isola (ca. 40 ha) collocata nello Stagnone di Marsala, in Sicilia occidentale. Grazie alla sua posizione strategica e riparata, al centro del Mediterraneo, e alla presenza di sorgenti d’acqua dolce, il sito è stato scelto come insediamento dai Fenici nell’VIII sec. a.C. fino all’assedio di Mozia nel 397/6 a.C. Lo studio dei macro-resti, separati attraverso flottazione, si è concentrato su due contesti chiusi: una favissa votiva sul lato sud-ovest del Tempio del Cappiddazzu (dedicato a Melqart/Herakles), ed un butto nell’Area D, entrambi databili tra l’VIII e il VI sec. a.C. Lo studio ha fornito un ampio set di dati che ha permesso la ricostruzione di diversi aspetti delle interazioni uomo ambiente dei Fenici a Mozia. Per quanto riguarda la sfera rituale, i sacrifici animali erano presumibilmente accompagnati da banchetti cerimoniali. Un’alta concentrazione di piante officinali è probabilmente correlata agli aspetti guaritori che il dio Melqart assumeva a Mozia. Il ritrovamento di numerosi taxa tossici per il bestiame risulta interessante, suggerendo il loro utilizzo per stordire gli animali prima di sacrificarli. È inoltre attestata la presenza di resti relative a offerte di frutti (Vitis vinifera) e fiori (Verbena officinalis), come anche di piante ornamentali (Cupressus cf. sempervirens). Dalla prospettiva secolare, la dieta umana era composta da cereali (principalemente frumenti nudi), legumi e frutta. Le piante infestanti di diverse dimensioni (tra cui Lolium temulentum e Phalaris ssp.) e i resti di pula, attribuibili a diverse fasi di lavorazione del raccolto, indicano che questa venisse svolta quotidianamente prima della consumazione. Questo aspetto è arricchito dal ritrovamento di polline di cereali, il quale suggerisce che la trebbiatura (se non anche la coltivazione) venisse svolta sul sito. Anche la palinologia permette di ricostruire un ambiente aperto, con poca o nessuna copertura forestale, caratterizzato da complesse attività antropiche. L’antracologica suggerisce la presenza di taxa tipici dell’area mediterranea. La presenza di un pinolo e di Pinus pinea/pinaster nella pioggia pollinica è degna di nota, suggerendo la presenza locale di questi pini mediterranei al di fuori del loro areale di distribuzione. Questo rappresenta il primo ritrovamento di questo tipo nel Mediterraneo centrale. I resti fossili consentono anche un confronto tra l'ambiente passato e presente di Mozia. La scomparsa di Juniperus sp. ed Erica arborea dai dintorni dell'attuale Stagnone di Marsala sembra essere correlata allo sfruttamento eccessivo del suolo, all’aridificazione o a una combinazione dei due fattori. Infine, il ruolo dei Fenici nella diffusione e nel commercio della vite è stato analizzato attraverso delle analisi morfometriche sui semi di Vitis vinifera rinvenuti nel butto dell’area D. Questi sono stati confrontati a campioni conservati per sommersione provenienti da altri due siti del Mediterraneo occidentale caratterizzati da influenze fenicie, Nuraghe S’Urachi (Sardegna, Italia) e Huelva (Spagna). I campioni archeobotanici sono stati confrontati con dieci cultivar del “Vivaio Federico Paulsen: Centro Regionale per la Conservazione della Biodiversità Agraria” di Marsala (Sicilia occidentale), selezionati come materiale moderno di riferimento. Le analisi delle componenti principali (PCA) hanno permesso un confronto tra siti, dimostrando che i campioni provenienti da essi sono chiaramente distinguibili in base alla loro morfologia. Questo indica l’utilizzo di diverse varietà, il quale può essere dovuto a numerosi fattori. Le analisi statistiche della forma dei semi d’uva mostrano che i campioni archeologici sono confrontabili morfologicamente a quelli delle varietà moderne, suggerendone la descrizione come “fortemente addomesticati”. Tuttavia, non è stata trovata alcuna apparente corrispondenza con dei cultivar moderni. Ciò è in parte legato alla dimensione limitata della collezione di riferimento, ai secoli di storia che hanno avuto un impatto sulla diversità della vite e ai fattori tafonomici.The present PhD thesis concerns the archaeobotanical analysis of materials found in the archaeological site of Motya, a small island (ca. 40 ha) located in the Stagnone di Marsala, a coastal lagoon of western Sicily. Due to its strategic, harbored position in the middle of the Mediterranean and the presence of fresh-water springs, the site was chosen by Phoenicians as a settlement in the 8th century BC until the siege of Motya in 397/6 BC. The study of macro-remains, retrieved using bucket flotation, focused on two closed contexts: a votive favissa found on the SW side of the Temple of Cappiddazzu (dedicated to Melqart/Herakles), and a big disposal pit in Area D, both dating between the 8th and the 6th century BC. In the latter context, palynological analyses were also performed. The study has yielded a wide set of data which allows to reconstruct different aspects of the human-environment interaction of Phoenicians at Motya. Concerning the ritual sphere, animal sacrifices were likely accompanied by ceremonial meals. A high concentration of officinal plants is probably correlated to the salvific aspects of Melqart at Motya. Interesting is the find of numerous plants toxic to livestock, which suggests their use to stun animals before sacrificing them. Remains referable to fruit (Vitis vinifera) and flower offerings (Verbena officinalis), as well as ornamental (Cupressus cf. sempervirens) plants are also attested. From the secular perspective, human diet was comprised of cereals (mostly naked wheat), pulses and fruits. Different-sized weeds (such as Lolium temulentum and Phalaris ssp.) and chaff remains, referable to different stages of crop processing, indicate that crop processing was carried out daily before consumption. This aspect is enriched by the find of cereal pollen, which suggests that threshing (if not even cultivation) was carried on site. Palynology also indicates an open environment, with little to no forest cover, characterized by complex anthropogenic activities. Anthracology suggests the presence of typical Mediterranean plant taxa. The presence of a stone pine nut and of Pinus pinea/pinaster in the pollen rain is noteworthy, suggesting the local occurrence of these Mediterranean pines outside their native distribution range. This represents the first such find in the central Mediterranean. Fossil evidence also allows a comparison of Motya’s past and present environment. The disappearance of Juniperus sp. and Erica arborea from the present-day surroundings of the Marsala lagoon appears to be related to land-overexploitation, aridification or on a combination of the two. Finally, the role of Phoenicians in the spread and trade of grapevine was investigated through morphometric analyses of the Vitis vinifera seeds retrieved from the disposal pit in Area D. These were compared to waterlogged samples from the western Mediterranean sites of Nuraghe S’Urachi (Sardinia, Italy) and Huelva (Spain), associated to Phoenician expansion and cultural interaction. Archaeobotanical samples were compared to ten chosen cultivars from the “Vivaio Federico Paulsen: Centro Regionale per la Conservazione della Biodiversità Agraria” in Marsala (western Sicily), selected as modern reference material. PCA analyses allowed an inter-site comparison, showing that samples from the three sites are clearly distinguishable based on their morphology. This indicates the use of different varieties which may be due to different factors. Statistical analyses of pip outlines show that archaeological material from these sites is morphologically comparable to that of modern varieties, suggesting that the archaeological finds may be described as “strongly domesticated”. Nonetheless, no apparent correspondence to modern cultivars was found. This is partly related to the limited size of the reference collection, to the centuries of history that have had an impact on grape diversity, and to taphonomic factors

    Research on Forecasting: A Quarter-Century Review, 1960-1984

    Get PDF
    Before 1960, little empirical research was done on forecasting methods. Since then, the literature has grown rapidly, especially in the area of judgmental forecasting. This research supports and adds to the forecasting guidelines proposed before 1960, such as the value of combining forecasts. New findings have led to significant gains in our ability to forecast and to help people to use forecasts. What have we reamed about forecasting over the past quarter century? Does recent research provide guidance for making more accurate forecasts, obtaining better assessments of uncertainty, or gaining acceptance of our forecasts? I will first describe forecasting principles that were believed to be the most advanced in 1960. Following that, I will examine the evidence produced since 1960.forecasting, forecasting research

    Archaeobotanical evidence of funerary plant offerings at the Southern Etrurian Necropolis of “Valle Santa nell’Agro Veientano” (Rome, Italy)

    Get PDF
    The present study concerns the archaeobotanical analysis of soil samples and vase fillings from Etruscan tombs from the Necropolis of “Valle Santa nell’Agro Veientano”, found along via di Boccea, north of Rome (Italy). While the site was in use between the Archaic and Late Roman Age, the studied vestibule tombs belong to the Etruscan necropolis (second half of the 6th – beginning of the 4th centuries BC). Archaeological data, based on the incineration rite and funerary equipment, suggest that these were used by one high-status family (or two) originally from Veio. Carpological analyses reveal the presence of food plants comprised of cereals, pulses and fruits. Furthermore, anthracological data give indications concerning the past environment, with a prevalence of deciduous and semi-deciduous oaks, accompanied by other taxa such as evergreen oaks, hornbeam, ash and Rosaceae Prunoideae. This is in accordance with the present-day vegetation of northern Latium. Finally, remains of synanthropic weeds (e.g., Asteraceae, Caryophyllaceae and Polygonaceae) suggest a heavily anthropized environment. This study represents a step forward in the understanding of the still under-explored human-plant interactions of Etruscans

    Seeds morpho-colourimetric analysis as complementary method to molecular characterization of melon diversity

    Full text link
    [EN] Melon has undergone an intense process of selection and crossbreeding, resulting in many landraces distributed all over Europe, Africa and Asia. Due to this huge variability, the systematic position of this taxon has been reviewed many times in the last two decades. The goal of this article is to compare the phenotypic characterization achieved by seed features with the molecular analysis on melon genotypes. A set of 124 accessions of Cucurnis melo has been selected for molecular and morpho-colourimetric analyses plus an additional selection of accessions of Cucumis sativus, Citrullus lanatus and Citrullus colocynthis used to highlight seed morphology distances among genus and species. Genotyping was performed on the basis of 211 polymorphic SNPs and was executed using the iPLEX (R) Gold MassARRAY Sequenom technology. A total of 137 parameters were specifically designed to evaluate seed colour, size, shape and texture. Both molecular and seed morpho-colourimetrical analyses confirm the existence of two melon subspecies while an intermediate group has also been found. A non random allelic distribution in SNPs located in specific genomic regions suggests that some of these regions may account for a part of the observed variation in seed size. Six major groups of varieties can be discriminated on the basis on seed traits. (C) 2015 Elsevier B.V. All rights reserved.The Italian University and Research Ministry (MIUR) financed the Ph.D. scholarship (Diego Sabato, Univeristy of Cagliari), making this research possible. Molecular analysis was carried out with contributions of the PLANT KKBE project PIM2010PKB-00691 and the complementary grant from the Generalitat Valenciana ACOMP/2013/141.Sabato, D.; Esteras Gómez, C.; Grillo, O.; Picó Sirvent, MB.; Bacchetta, G. (2015). Seeds morpho-colourimetric analysis as complementary method to molecular characterization of melon diversity. Scientia Horticulturae. 192:441-452. https://doi.org/10.1016/j.scienta.2015.06.006S44145219

    Molecular and morphological characterisation of the oldest Cucumis melo L. seeds found in the Western Mediterranean Basin

    Full text link
    [EN] In 2008¿2009, a rescue excavation uncovered an intact Late Bronze Age well in Sa Osa, Sardinia (Italy). The structure yielded a large number of waterlogged plant remains, of which a group of melon seeds (Cucumis melo L.) were some of the most remarkable. These seeds represent the earliest recorded remains of this taxon in the Western Mediterranean and are some of the oldest ever recorded. The plant remains were preserved in anoxic conditions and were found in a perfect state of conservation, making them ideal candidates for morphometric and molecular characterisation. A total of 96 parameters, measured using an automatic image analysis system, were specifically designed to evaluate the morphological features of 15 preserved whole seeds. DNA extraction from archaeological samples followed a procedure specifically set up to avoid any kind of contamination. A 123-SNP genotyping platform that had been validated previously was used. The morphological and molecular data of the archaeological seeds were successfully compared with those of a set of 179 accessions, including landraces, of feral and wild melons from Europe, Africa, and Asia. Both analyses confirmed that these ancient seeds did not belong to a wild melon, but instead to a cultivated one. This primitive melon could have belonged to a group of ancestral non-sweet or semi-sweet forms of chate, flexuosus, or ameri varieties, showing similarities to North African and Central Asian accessions. This finding is coherent with the reportedly important role of cucumber-like melons in the species¿ diversification process and with the accepted role of the ameri group as the ancestors of the modern sweet varieties.Sabato, D.; Esteras Gómez, C.; Grillo, O.; Peña-Chocarro, L.; Leida, C.; Ucchesu, M.; Usai, A.... (2017). Molecular and morphological characterisation of the oldest Cucumis melo L. seeds found in the Western Mediterranean Basin. Archaeological and Anthropological Sciences (Online). 1-22. https://doi.org/10.1007/s12520-017-0560-zS122Álvarez Martínez JM, Caldera P, de la Barrera JL, Nogales T, Velázquez A (2000) Museo Nacional de Arte Romano. Electra, MadridArgyris JM, Garcia-Mas J, Jahrmann T, Fernández M, Picó B, Gibon Y (2014) Development of recombinant sub-NILs containing smaller introgressions of QTL ssc5.1 determined to be involved in the accumulation of sugar via MAS and high throughput SNP genotyping. In: Havey M, Weng Y, Day B, Grumet R (eds) Cucurbitaceae 2014 proceedings. Michigan (USA) October 12-16th, pp 108–110Attene G, Rodriguez M (2008) Risorse genetiche di specie ortive della Sardegna. Euro Editrice, SassariAvital A, Paris HS (2014) Cucurbits depicted in Byzantine mosaics from Israel, 350–600 CE. Ann Bot 114:203–222Bacchetta G, Escobar P, Grillo O, Mascia F, Venora G (2011a) Seed image analysis provides evidence of taxonomical differentiation within the Lavatera triloba aggregate (Malvaceae). Flora 206:468–472Bacchetta G, Fenu G, Grillo O, Mattana E, Venora G (2011b) Identification of Sardinian species of Astragalus section melanocercis (Fabaceae) by seed image analysis. Ann Bot Fenn 48:449–454Bacchetta G, Grillo O, Mattana E, Venora G (2008) Morpho-colorimetric characterization by image analysis to identify diaspores of wild plant species. Flora 203:669–682Bakels C, Jacomet S (2003) Access to luxury food in Central Europe during the Roman period: the archaeobotanical evidence. World Archaeol 34:542–557Balmelle C (1990) Recherches franco-tunisiennes sur la mosaïque de l’Afrique antique, part 1, Xenia. L’Ecole Française de Rome, RomeBaratte F (1978) Catalogue des mosaïques romaines et paléchretiénnes du Musée du Louvre. Éditions de la Réunion des musées nationaux, ParisBates DM, Robinson RW (1995) Cucumbers, melons and water-melons. In: Smartt J, Simmonds NW (eds) Evolution of crop plants, 2nd edn. Longman Scientific, Harlow, pp 89–96Beneš J, Čulíková V, Kosňovská J, Frolík J, Matiášek J (2012) New plants at Prague Castle and Hradčany in the early Modern period: a history of selected species. Interdisciplinaria Archaeologica-Natural Sciences in Archaeology 3(1):103–114Bernardini P, Perra M (2012) I nuragici, i fenici e gli altri, Sardegna e Mediterraneo tra Bronzo Finale e Prima Età del Ferro. Delfino Editore, SassariBlanca J, Cañizares J, Ziarsolo P, Esteras C, Mir G, Nuez F et al (2011) Melon transcriptome characterization: simple sequence repeats and single nucleotide polymorphisms discovery or high throughput genotyping across the species. Plant Genome 4:118–131Blanca J, Esteras C, Ziarsolo P, Pérez D, Fernández-Pedrosa V, Collado C et al (2012) Transcriptome sequencing for SNP discovery across Cucumis melo. BMC Genomics 13:280Blanchard-Lemée M, Ennaïfer M, Slim H, Slim L (1995) Sols de l’Afrique romaine: Mosaïques de Tunisie. Imprimerie Nationale Editions, ParisBottema S, Sarpaki A (2003) Environmental change in Crete: a 9000-year record of Holocene vegetation history and the effect of the Santorini eruption. The Holocene 13:733–749Brown TA, Cappellini E, Kistler L, Lister DL, Oliveira HR, Wales N, Schlumbaum A (2015) Recent advances in ancient DNA research and their implications for archaeobotany. Veg Hist Archaeobot 24:207–214Burger Y, Paris HS, Cohen R, Katzir N, Tadmor Y, Lewinsohn E (2010) Genetic diversity of Cucumis melo. Hortic Rev 36:165–198Castelletti L, Castiglioni E, Rottoli M (2001) L’agricoltura dell’Italia settentrionale dal Neolitico al Medioevo. In: Failla O, Forni G (eds) Le piante coltivate e la loro storia. Dalle origini al transgenico in Lombardia nel centenario della riscoperta della genetica di Mendel. Franco Angeli Editore, Milano, pp 33–84Chang KC (1973) Radiocarbon dates from China, some interim interpretations. Curr Anthropol 14:525–528Cooper A, Poinar HN (2000) Ancient DNA: do it right or not at all. Science 289(5482):1139Costantini L (1977) Le Piante. In: Tucci G (ed) La città bruciata del deserto salato. Erizzo, Venezia, pp 159–171Costantini L (1987) Appendix B. Vegetal remains. In: Stacul G (ed) Prehistoric and protohistoric Swat, Pakistan. Instituto Italiano per il Medio ed Estremo Orientale, Rome, pp 155–165Dai N, Cohen S, Portnoy V, Tzuri G, Harel-Beja R, Pompan-Lotan M et al (2011) Metabolism of soluble sugars in developing melon fruit: a global transcriptional view of the metabolic transition to sucrose accumulation. Plant Mol Biol 76:1–18Darby WJ, Ghalioungui P, Grivetti L (1977) Food, the gift of Osiris. Academic Press, LondonDíaz A, Fergany M, Formisano G, Ziarsolo P, Blanca J, Fei Z et al (2011) A consensus linkage map for molecular markers and quantitative trait loci associated with economically important traits in melon (Cucumis melo L.) BMC Plant Biol 11:111Díaz A, Forment J, Argyris JM, Fukino N, Tzuri G, Harel-Beja R et al (2015) Anchoring the consensus ICuGI genetic map to the melon (Cucumis melo L.) genome. Mol Breeding 35:188Druzhkova AS, Vorobieva NV, Trifonov VA, Graphodatsky AS (2015) Ancient DNA: results and prospects (the 30th anniversary). Russ J Genet 51(6):529–544El Hadidi MN, Fahmy AGED, Willerding U (1996) The paleoethnobotany of locality 11C, Hierakonpolis (3800-3500 BC); Egypt. Taeckholmia 16:45–60Elbaum R, Melamed-Bessudo C, Boaretto E, Galili E, Lev-Yadun S, Levy AA et al (2005) Ancient olive DNA in pits, preservation, amplification and sequence analysis. J Archaeol Sci 33:77–88Esteras C, Formisano G, Roig C, Díaz A, Blanca J, Garcia-Mas J et al (2013) SNP genotyping in melons: genetic variation, population structure, and linkage disequilibrium. Theor Appl Genet 126:1285–1303Esteras C, Nuez F, Picó B (2012) Genetic diversity studies in cucurbits using molecular tools. In: Wang Y, Behera TK, Kole C (eds) Cucurbits: genetics, genomics and breeding of cucurbits. Science Publishers Inc, New Hampshire, pp 140–198Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Mol Ecol 14:2611–2620Fahmy AGED (2001) Plant remains in gut contents of ancient Egyptian predynastic mummies (3750-3300 BC). J Biol Sci 1:772–774Fahmy AGED (2003) Palaeoethnobotanical studies of Egyptian predynastic cemeteries: new dimensions and contributions. In: Neumann K, Butler A, Kahlheber S (eds) Food, fuel and fields. Progress in African archaeobotany. Heinrich Barth Institut, Frankfurt, pp 95–106Fujishita N (1983) Genetic diversity and phylogenetic differentiation in melon. Curr Top Plant Breed 24:3–21Fuller DQ (2007) Contrasting patterns in crop domestication and domestication rates: recent archaeobotanical insights from the Old World. Ann Bot 100:903–924Fuller DQ (2012) New archaeobotanical information on plant domestication from macro-remains: tracking the evolution of domestication syndrome traits. In: Gepts P, Famula TR, Bettinger RL, Brush SB, Damania AB, McGuire PE, Qualset CO (eds) Biodiversity in agriculture. Domestication, evolution, and sustainability. Cambridge University Press, Cambridge, pp 110–135Fuller DQ, Madella M (2001) Issues in Harappan Archaeobotany: retrospect and prospect. In: Settar S, Korisettar R (eds) Indian archaeology in retrospect. Volume 2. Protohistory. Archaeology of the Harappan civilization. Indian Council of Historical Research, New Delhi, pp 317–390Gabriel S, Ziaugra L, Tabbaa D (2009) SNP genotyping using the Sequenom MassARRAY iPLEX platform. Curr Protoc Hum Genet 60:11–18Germer R (1985) Flora des pharaonischen Ägypten. Deutsches Archäologisches Institut, Abt. Kairo, SonderschrGilbert MT, Binladen J, Miller W, Wiuf C, Willerslev E, Poinar H, Carlson JE, Leebens-Mack JH, Schuster SC (2007) Recharacterization of ancient DNA miscoding lesions: insights in the era of sequencing-by-synthesis. Nucleic Acids Res 35:1–10Gorman CF (1969) Hoabinhian: a pebble-tool complex with early plant associations in southeast Asia. Science 163:671–673Gorman CF (1972) Excavations at Spirit Cave, North Thailand: some interim interpretations. Asian Perspect 13:79–107Grillo O, Draper D, Venora G, Martínez-Laborde JB (2012) Seed image analysis and taxonomy of Diplotaxis DC. (Brassicaceae, Brassiceae). Syst Biodivers 10:57–70Grillo O, Mattana E, Venora G, Bacchetta G (2010) Statistical seed classifiers of 10 plant families representative of the Mediterranean vascular flora. Seed Sci Technol 38:455–476Gugerli F, Parducci L, Petit RJ (2005) Ancient plant DNA: review and prospects. New Phytol 166:409–418Gyulai G, Waters L, Dane F (2008) Ancient cucurbit DNA-unlocking domestication events. Fublbright Year Book, BudapestHâruta O (2011) Elliptic Fourier analysis of crown shapes in Quercus petraea trees. Ann. For Res 54:99–117Jacomet S, Kučan D, Ritter A, Suter G, Hagendorn A (2002) Punica granatum L (pomegranates) from early Roman context in Vindonissa (Switzerland). Veg Hist Archaeobot 11:79–92Jacquine P (1832) Monographie complète du melon. Roussellon, ParisJanick J, Paris HS, Parrish DC (2007) The cucurbits of Mediterranean antiquity: identification of taxa from ancient images and descriptions. Ann Bot 100:1441–1457Jeffrey C (1980) A review of the Cucurbitaceae. Bot J Linn Soc 81:233–247Jeffrey C (2005) A new system of Cucurbitaceae. Bot Zhurn 90:332–335Kajale MD (1988) Plant Economy. In: Dhavalikar MK, Sankalia HD, Ansari ZD (eds) Excavations at Inamgaon. Deccan College Postgraduate and Research Institute, Pune, pp 727–821Kajale MD (1996) Palaeobotanical investigations at Balathal: preliminary results. Man Environ 21:98–102Keimer L (1924) Die Gartenpflanzen in Alten Agypten, vol 1. Hoffmann und Campe Verlag, HamburgKeng H (1974) Economic plants of ancient North China as mentioned in Shih Ching (Book of Poetry). Econ Bot 28:391–410Kerje T, Grum M (2000) The origin of melon, Cucumis melo: a review of the literature. Acta Hort 510:37–44Kirkbride JH (1993) Biosystematic monograph of the genus Cucumis (Cucurbitaceae). Parkway Publishers, BooneKistler L (2012) Ancient DNA extraction from plants. In: Shapiro B, Hofreiter M (eds) Methods in molecular biology: ancient DNA. Humana Press, New York, pp 71–79Körber-Grohne U (1994) Nutzpflanzen in Deutschland. Kulturgeschichte und Biologie. 3rd ed. Theiss, StuttgartKroll H (1982) Kulturpflanzen von Tiryns. Archaeo Anz 1:467–485Kroll H (1983) Kastanas. Ausgrabungen in einem Siedlungshügel der Bronze- und Eisenzeit Makedoniens 1975–1979. Die Pflanzenfunde. Prähistorische Archäologie in Südosteuropa 2. Volker Spiess, BerlinKroll H (1984) Bronze Age and Iron Age agriculture in Kastanas, Macedonia. In: van Zeist W, Casparie WA (eds) Plants and ancient man. Balkema, Boston, pp 243–247Kučan D (1995) Zur Ernährung und dem Gebrauch von Pflanzen im Heraion von Samos im 7. Jahrhundert v Chr JDAI 110:1–64Laghetti G, Accogli R, Hammer K (2008) Different cucumber melon (Cucumis melo L.) races cultivated in Salento (Italy). Genet Resour Crop Ev 55:619–623Leida C, Moser C, Esteras C, Sulpice R, Lunn JE, de Langen F et al (2015) Variability of candidate genes and genetic association for sugar accumulation and climacteric behavior in melon (Cucumis melo L). BMC Genet 16:28Li C, Lister DL, Li H, Xu Y, Cui Y et al (2011) Ancient DNA analysis of desiccated wheat grains excavated from a Bronze Age cemetery in Xinjiang. J Archaeol Sci 38:115–119Li HL (1969) The vegetables of ancient China. Econ Bot 23:253–260Li HL (1970) The origin of cultivated plants in southeast Asia. Econ Bot 24:3–19Liu K, Muse SV (2005) Powermarker: integrated analysis environment for genetic marker data. Bioinformatics 21:2128–2129Livarda A (2008) Introduction and dispersal of exotic food plants into Europe during the Roman and the Medieval periods. University of Leicester, DissertationLivarda A (2011) Spicing up life in northwestern Europe: exotic food plant imports in the Roman and Medieval world. Veg Hist Archaeobot 20:143–164Lo Schiavo F (2003) Sardinia between East and West, interconnections in the Mediterranean. In: Stampolidis NC, Karageorghis V (eds) Sea routes, interconnections in the Mediterranean 16th-6th BC. University of Crete, Leventis Foundation, Athens, pp 15–34Lovicu G, Labra M, De Mattia F, Farci M, Bacchetta G, Orrù M (2011) Prime osservazioni sui vinaccioli rinvenuti negli scavi di Sa Osa. In: Mastino A, Spanu PG, Usai A, Zucca R (eds) Tharros Felix 4. Carocci Editore, Roma, pp 249–255Manen JF, Bouby L, Dalnoki O, Marinval P, Turgay M, Schlumbaum A (2003) Microsatellites from archaeological Vitis vinifera seeds allow a tentative assignment of the geographical origin of ancient cultivars. J Archaeol Sci 30:721–729Manniche L (1989) An ancient Egyptian herbal. University of Texas Press, AustinMarinval P (2000) Économie végétale à l’âge du Bronze final et à l’époque romaine en bord de Saône. In: Bonnamour L (ed) Archéologie des fleuves et des rivières. Errance, Paris, pp 48–52Megaloudi F (2006) Plants and diet in Greece from Neolithic to Classical Period: the archaeobotanical remains. British Archaeological Reports International Series 1516. Archaeopress, OxfordMukherjee A, Roy SC, Bera SD, Jiang H-E, Li X, Li C-S et al (2008) Results of molecular analysis of an archaeological hemp (Cannabis sativa L.) DNA sample from North West China. Genet Resour Crop Evol 55:481–485Munger HM, Robinson RW (1991) Nomenclature of Cucumis melo L. Cucurbit Genet Coop Rep 14:43–44Murray MA (2000) Fruits, vegetables, pulses and condiments. In: Nicholson PT, Shaw I (eds) Ancient Egyptian materials and technology. Cambridge University Press, Cambridge, pp 609–655Murphy C, Thompson G, Fuller DQ (2013) Roman food refuse: urban archaeobotany in Pompeii, Regio VI, Insula 1. Veg Hist Archaeobot 22:409–419Naudin C (1859) Essais dune monographiedes espèces et des varieties du genre Cucumis. Ann Sci Nat Bot 11:5–87Nesbitt M, O’Hara S (2000) Irrigation agriculture in Central Asia: a long-term perspective from Turkmenistan. In: Barker G, Gibertson D (eds) The archaeology of drylands. Living at the margin. Routledge, London-New York, pp 103–122Nunes EWLP, Esteras C, Ricarte AO, Martínez EM, Gómez-Guillamón ML, Nunes GHS, Picó MB (2017) Brazilian melon landraces resistant to Podosphaera xanthii are unique germplasm resources. Ann Appl Biol 171:214–228Oliveira HR, Civáň P, Morales J, Rodríguez-Rodríguez A, Lister DL, Jones MK (2012) Ancient DNA in archaeological wheat grains: preservation conditions and the study of pre-Hispanic agriculture on the island of Gran Canaria (Spain). J Archaeol Sci 39:828–835Orlando L, Gilbert MTP, Willerslev E (2015) Applications of next-generation sequencing. Reconstructing ancient genomes and epigenomes. Nat Rev Genet 16:395–408Orrù M, Grillo O, Lovicu G, Venora G, Bacchetta G (2013a) Morphological characterisation of Vitis vinifera L. seeds by image analysis and comparison with archaeological remains. Veg Hist Archaeobot 22:231–242Orrù M, Grillo O, Venora G, Bacchetta G (2013b) Computer vision as a method complementary to molecular analysis: grapevine cultivar seeds case study. C R Biol 335:602–615Pääbo S (1989) Ancient DNA; extraction, characterization, molecular cloning and enzymatic amplification. Proc Natl Acad Sci U S A 86:1939–1943Pääbo S, Poinar H, Serre D, Jaenicke-Després V, Hebler J, Rohland N et al (2004) Genetic analyses from ancient DNA. Annu Rev Genet 38:645–679Palmer SA, Smith O, Allaby RG (2012) The blossoming of plant archaeogenetics. Ann Anat 194:146–156Paris HS (2015) Overview of the origins and history of the five major cucurbit crops: issues for ancient DNA analysis of archaeological specimens. Veget Hist Archaeobot (2016 25:405–414Paris HS, Amar Z, Lev E (2012) Medieval emergence of sweet melons, Cucumis melo (Cucurbitaceae). Ann Bot 110:23–33Paris HS, Daunay MC, Janick J (2009) The Cucurbitaceae and Solanaceae illustrated in medieval manuscripts known as the Tacuinum Sanitatis. Ann Bot 103:1187–1205Paris HS, Janick J, Daunay MC (2011) Medieval herbal iconography and lexicography of Cucumis (cucumber and melon, Cucurbitaceae) in the Occident, 1300–1458. Ann Bot 108:471–484Paris HS, Nerson H (2003) Seed dimensions in the subspecies and cultivar-groups of Cucurbita pepo. Genet Resour Crop Ev 50:615–625Pazaras T (1981) Two early Christian tombs from the western cemetery of Thessaloniki. Makedonica 21:373–389Pepe C, Giardini M, Giraudi C, Masi A, Mazzini I, Sadori L (2013) Climate and landscape in marginal marine environments: the ancient Roman harbour of Portus (Rome, Italy). Quat In 303:73–81Pinna S, Grillo O, Mattana E, Cañadas E, Bacchetta G (2014) Inter- and intraspecific morphometric variability in Juniperus L. seeds (Cupressaceae). Syst Biodivers 12:211–223Pitrat M, Hanelt P, Hammer K (2000) Some comments on infraspecific classification of cultivar of melon. Acta Hortic 510:29–36Pitrat M (2013) Phenotypic diversity in wild and cultivated melons (Cucumis melo). Plant. Biotech 30:273–278Pitrat M (2016) Melon genetic resources: phenotypic diversity and horticultural taxonomy. In: Grumet R, Katzir N, Garcia-Mas J (eds) Genetics and genomics of Cucurbitaceae, plant genetics and genomics: crops and models. Springer International Publishing, New York, pp 1–36Pollmann B, Jacomet S, Schlumbaum A (2005) Morphological and genetic studies of waterlogged Prunus species from the Roman vicus Tasgetium, Switzerland. J Archaeol Sci 32:1471–1480Purugganan M, Fuller DQ (2011) Archaeological data reveal slow rates of evolution during plant domestication. Evolution 65:171–183Renfrew JM (1985) Chapter 9. Preliminary report on the botanical remains. In: Kemp BJ (ed) Amarna Reports II. Occasional Papers 2. Egypt Exploration Society, London, pp 175–190Renner SS, Schaefer H, Kocyan A (2007) Phylogenetics of Cucumis (Cucurbitaceae): cucumber (C. sativus) belongs in an Asian/Australian clade far from melon (C. melo). Evol Biol 7:58Rinaldi R, Bandini Mazzanti M, Bosi G (2013) Archaeobotany in urban site: the case of Mutina. Annali di Botanica 3:217–230Rohland N, Hofreiter M (2007) Comparison and optimization of ancient DNA extraction. BioTechniques 42:343–352Sabato D, Esteras C, Grillo O, Picó B, Bacchetta G (2015a) Seed morpho-colourimetric analysis as complementary method to molecular characterization of melon diversity. Sci Hort 192:441–452Sabato D, Masi A, Ucchesu M, Peña-Chocarro L, Usai A, Giachi G, Capretti C, Bacchetta G (2015b) Archaeobotanical analysis of a Bronze Age well from Sardinia: a wealth of knowledge. Plant Biosyst 149:205–215Sadori L, Allevato E, Bellini C, Bertacchi A, Boetto G, Di Pasquale G et al (2014) Archaeobotany in Italian ancient Roman harbours. Rev Palaeobot Palyno 218:217–230Sanseverino W, Hénaff E, Vives C, Pinosio S, Burgos-Paz W, Morgante M et al (2015) Transposon insertion, structural variations and SNPs contribute to the evolution of the melon genome. Mol Biol Evol. https://doi.org/10.1093/molbev/msv152Schlumbaum A, Tensen M, Jaenicke-Després V (2008) Ancient plant DNA in archaeobotany. Veg Hist Archaeobot 17:233–244Sebastian P, Schaefer H, Telford IRH, Renner SS (2010) Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species from melon is from Australia. Proc Natl Ac Sci USA 107:14269–14273Serres-Giardi L, Dogimont C (2012) How microsatellite diversity helps to understand the domestication history of melon. In: Sari M, Solmaz I, Aras V (eds) Cucurbitaceae 2012, Proceedings of the Xth EUCARPIA meeting on genetics and breeding of Cucurbitaceae. Antalya (Turkey) October 15-18th, pp 254–263Smith RWA, Monroe C, Bolnick DA (2015) Detection of cytosine methylation in ancient DNA from five native American populations using bisulfite sequencing. PLoS One 10(5):e0125344. https://doi.org/10.1371/journal.pone.0125344Smykalova I, Grillo O, Bjelkova M, Hybl M, Venora G (2011) Morpho-colorimetric traits of Pisum seeds measured by an image analysis system. Seed Sci Technol 39:612–626Smykalova I, Grillo O, Bjelkova M, Pavelek M, Venora G (2013) Phenot

    What is a tree in the mediterranean basin hotspot? A critical analysis

    Get PDF
    Background: Tree species represent 20% of the vascular plant species worldwide and they play a crucial role in the global functioning of the biosphere. The Mediterranean Basin is one of the 36 world biodiversity hotspots, and it is estimated that forests covered 82% of the landscape before the first human impacts, thousands of years ago. However, the spatial distribution of the Mediterranean biodiversity is still imperfectly known, and a focus on tree species constitutes a key issue for understanding forest functioning and develop conservation strategies. Methods: We provide the first comprehensive checklist of all native tree taxa (species and subspecies) present in the Mediterranean-European region (from Portugal to Cyprus). We identified some cases of woody species difficult to categorize as trees that we further called “cryptic trees”. We collected the occurrences of tree taxa by “administrative regions”, i.e. country or large island, and by biogeographical provinces. We studied the species-area relationship, and evaluated the conservation issues for threatened taxa following IUCN criteria. Results: We identified 245 tree taxa that included 210 species and 35 subspecies, belonging to 33 families and 64 genera. It included 46 endemic tree taxa (30 species and 16 subspecies), mainly distributed within a single biogeographical unit. The countries with the highest tree richness are Greece (146 taxa), Italy (133), Albania (122), Spain (155), Macedonia (116), and Croatia (110). The species-area relationship clearly discriminated the richest central-eastern (Balkans) and northern (Alpine and Cevenno-Pyrenean) biogeographical provinces, against the five western provinces in the Iberian Peninsula. We identified 44 unrecognized “cryptic trees”, representing 21% of the total trees. Among the 245 taxa identified, 19 are considered to be threatened (15 CR + EN + VU) or near threatened (4 NT) by IUCN. Conclusions: The Mediterranean-European region includes an unsuspectedly high number of tree taxa, almost 200 tree taxa more than in the central European region. This tree diversity is not distributed evenly and culminates in the central-eastern part of the Mediterranean region, whereas some large Tyrrhenian islands shelter several narrow endemic tree taxa. Few taxa are recognized as threatened in the IUCN Red list, and the vulnerability of these species is probably underestimated.French Foundation for Research on Biodiversity (FRB). Centre for Synthesis and Analysis of Biodiversity data ANR-11-LABX-006
    corecore