Sedimentation of particulate matter during a phytoplankton spring bloom in relation to the hydrographical regime

Data presented and discussed here were collected continuously during April/May 1975 in the Bornholm Basin of the Baltic Sea. Sedimentation rates of particulate matter were recorded with 5 multisample sediment traps from different depths in the water column at 2 positions 170 km apart. Current meter data collected during the same period and depths indicated that the positions remained hydrographically distinct during the investigation. Particulate matter from the euphotic zone including diatom cells formed the bulk of the material collected by all traps. This flux of organic particles to the bottom was unimpeded by the strong density stratification present in the water column. The upper traps always collected less material than lower ones. This paradox has been ascribed to diminishing current speeds with depth, concomitant with an increase in sinking rates of phytoplankton and phytodetritus. Both factors influence the sampling efficiency of sediment traps, which are thought to have underestimated actual sedimentation rates here. A time lag of 2 to 3 weeks in bloom development seemed responsible for the characteristic differences between the two positions. The phase of major sedimentation at one position covered about 18 days, and a distinct sequence in the composition of the material collected by the 6 glasses of each trap indicated phases of a progressively deteriorating phytoplankton population in the water column contributing the particulate material. A total of 6.2 g C m-2 in 34 days was recorded at this station. Apart from a trap situated in an oxygen deficient layer which collected 0.44 g C m-2 of zooplankton corpses, zooplankton mortality was overestimated by the traps. Large-scale sedimencation of “fresh” organic matter produced by the spring bloom is probably a regular feature in areas with low over-wintering zooplankton populations and, as such, possibly has a direct stimulatory effect on growth and reproduction of the benthos

Animating the Carbon Cycle

This a post-print, author-produced version of an article accepted for publication in Ecosystems. Copyright © 2013 Springer Science+Business Media New York. The final publication is available at Springer via http://dx.doi.org/10.1007/s10021-013-9715-7Understanding the biogeochemical processes regulating carbon cycling is central to mitigating atmospheric CO2 emissions. The role of living organisms has been accounted for, but the focus has traditionally been on contributions of plants and microbes. We develop the case that fully “animating” the carbon cycle requires broader consideration of the functional role of animals in mediating biogeochemical processes and quantification of their effects on carbon storage and exchange among terrestrial and aquatic reservoirs and the atmosphere. To encourage more hypothesis-driven experimental research that quantifies animal effects we discuss the mechanisms by which animals may affect carbon exchanges and storage within and among ecosystems and the atmosphere. We illustrate how those mechanisms lead to multiplier effects whose magnitudes may rival those of more traditional carbon storage and exchange rate estimates currently used in the carbon budget. Many animal species are already directly managed. Thus improved quantitative understanding of their influence on carbon budgets may create opportunity for management and policy to identify and implement new options for mitigating CO2 release at regional scales.US National Science FoundationNERCBBSRCNippon Foundatio

Benthic response to sedimentation events during autumn to spring at a shallow-water station in the Western Kiel Bight

The response of the benthos to the break up of anoxia in the Kiel Bight (Western Baltic Sea), and to three succeeding events of “external” food supply, consisting of a settled autumn plankton bloom, resuspended matter and macrophyte input during winter, and of a sedimented spring phytoplankton bloom, is described on a community level. The first input of oxygen broke up anoxic conditions and made stored food resources available to decomposition. This “internal” food supply, mainly consisting of protein (folin positive matter), was followed by a drastic increase in heat production and ATP-biomass and caused a period of low redox potential, which lasted for several weeks. During this phase, a plankton bloom (dinoflagellates and diatoms) settled to the sea floor. Although there was an immediate response of benthic activity, this food input was not completely consumed by the strongly disturbed benthic community. During winter resuspended matter and the input of macrophyte debris caused another maximum in benthic activity and biomass despite the low temperature. The response to sedimentation of cells from a diatom bloom during mid March was also without any time lag and was consumed within 5–6 wk. A comparison of the amount of particles collected in a sediment trap with the increase of organic matter in the sediment demonstrated that the sediment collected four times (autumn) and seven to eight times (spring) more than measured by the sediment trap. Strong indications of food limitation of benthic activity were found. During autumn and winter these indications were caused more by physical than by biological processes. The three events of “external” food supply caused a temporary shift in the type of metabolism towards fermentation processes and reduced the redox potential. In spring the development of the benthic community was still being strongly influenced by the events of the preceding summer and autumn

Mechanistic origins of variability in phytoplankton dynamics. Part II: analysis of mesocosm blooms under climate change scenarios

Driving factors of phytoplankton spring blooms have been discussed since long, but rarely analyzed quantitatively. Here, we use a mechanistic size-based ecosystem model to reconstruct observations made during the Kiel mesocosm experiments (2005–2006). The model accurately hindcasts highly variable bloom developments including community shifts in cell size. Under low light, phytoplankton dynamics was mostly controlled by selective mesozooplankton grazing. Selective grazing also explains initial dominance of large diatoms under high light conditions. All blooms were mainly terminated by aggregation and sedimentation. Allometries in nutrient uptake capabilities led to a delayed, post-bloom dominance of small species. In general, biomass and trait dynamics revealed many mutual dependencies, while growth factors decoupled from the respective selective forces. A size shift induced by one factor often changed the growth dependency on other factors. Within climate change scenarios, these indirect effects produced large sensitivities of ecosystem fluxes to the size distribution of winter phytoplankton. These sensitivities exceeded those found for changes in vertical mixing, whereas temperature changes only had minimal impacts

Tools for crushing diatoms – opal teeth in copepods feature a rubber-like bearing composed of resilin

Diatoms are generally known for superior mechanical properties of their mineralised shells. Nevertheless, many copepod crustaceans are able to crush such shells using their mandibles. This ability very likely requires feeding tools with specific material compositions and properties. For mandibles of several copepod species silica-containing parts called opal teeth have been described. The present study reveals the existence of complex composite structures, which contain, in addition to silica, the soft and elastic protein resilin and form opal teeth with a rubber-like bearing in the mandibles of the copepod Centropages hamatus. These composite structures likely increase the efficiency of the opal teeth while simultaneously reducing the risk of mechanical damage. They are supposed to have coevolved with the diatom shells in the evolutionary arms race, and their development might have been the basis for the dominance of the copepods within today's marine zooplankton

Ubiquitous healthy diatoms in the deep sea confirm deep carbon injection by the biological pump

The role of the ocean as a sink for CO2 is partially dependent on the downward transport of phytoplankton cells packaged within fast-sinking particles. However, whether such fast-sinking mechanisms deliver fresh organic carbon down to the deep bathypelagic sea and whether this mechanism is prevalent across the ocean requires confirmation. Here we report the ubiquitous presence of healthy photosynthetic cells, dominated by diatoms, down to 4,000 m in the deep dark ocean. Decay experiments with surface phytoplankton suggested that the large proportion (18%) of healthy photosynthetic cells observed, on average, in the dark ocean, requires transport times from a few days to a few weeks, corresponding to sinking rates (124–732 m d−1) comparable to those of fast-sinking aggregates and faecal pellets. These results confirm the expectation that fast-sinking mechanisms inject fresh organic carbon into the deep sea and that this is a prevalent process operating across the global oligotrophic ocean

Krill Excretion Boosts Microbial Activity in the Southern Ocean

Antarctic krill are known to release large amounts of inorganic and organic nutrients to the water column. Here we test the role of krill excretion of dissolved products in stimulating heterotrophic bacteria on the basis of three experiments where ammonium and organic excretory products released by krill were added to bacterial assemblages, free of grazers. Our results demonstrate that the addition of krill excretion products (but not of ammonium alone), at levels expected in krill swarms, greatly stimulates bacteria resulting in an order-of-magnitude increase in growth and production. Furthermore, they suggest that bacterial growth rate in the Southern Ocean is suppressed well below their potential by resource limitation. Enhanced bacterial activity in the presence of krill, which are major sources of DOC in the Southern Ocean, would further increase recycling processes associated with krill activity, resulting in highly efficient krill-bacterial recycling that should be conducive to stimulating periods of high primary productivity in the Southern Ocean.This research is a contribution to projects ICEPOS (REN2002-04165-CO3-O2) and ATOS (POL2006-00550/CTM), funded by the Spanish Ministry of Science and Innovation

Depth-dependent mycoplankton glycoside hydrolase gene activity in the open ocean—evidence from the Tara Oceans eukaryote metatranscriptomes

6 months embargo applie

Editing of the urease gene by CRISPR-Cas in the diatom Thalassiosira pseudonana

Background: CRISPR-Cas is a recent and powerful addition to the molecular toolbox which allows programmable genome editing. It has been used to modify genes in a wide variety of organisms, but only two alga to date. Here we present a methodology to edit the genome of Thalassiosira pseudonana, a model centric diatom with both ecological significance and high biotechnological potential, using CRISPR-Cas. Results: A single construct was assembled using Golden Gate cloning. Two sgRNAs were used to introduce a precise 37 nt deletion early in the coding region of the urease gene. A high percentage of bi-allelic mutations (≤61.5%) were observed in clones with the CRISPR-Cas construct. Growth of bi-allelic mutants in urea led to a significant reduction in growth rate and cell size compared to growth in nitrate. Conclusions: CRISPR-Cas can precisely and efficiently edit the genome of T. pseudonana. The use of Golden Gate cloning to assemble CRISPR-Cas constructs gives additional flexibility to the CRISPR-Cas method and facilitates modifications to target alternative genes or species

Phytoplankton competition in deep biomass maximum

Resource competition in heterogeneous environments is still an unresolved problem of theoretical ecology. In this article I analyze competition between two phytoplankton species in a deep water column, where the distributions of main resources (light and a limiting nutrient) have opposing gradients and co-limitation by both resources causes a deep biomass maximum. Assuming that the species have a trade-off in resource requirements and the water column is weakly mixed, I apply the invasion threshold analysis (Ryabov and Blasius 2011) to determine relations between environmental conditions and phytoplankton composition. Although species deplete resources in the interior of the water column, the resource levels at the bottom and surface remain high. As a result, the slope of resources gradients becomes a new crucial factor which, rather than the local resource values, determines the outcome of competition. The value of resource gradients nonlinearly depend on the density of consumers. This leads to complex relationships between environmental parameters and species composition. In particular, it is shown that an increase of both the incident light intensity or bottom nutrient concentrations favors the best light competitors, while an increase of the turbulent mixing or background turbidity favors the best nutrient competitors. These results might be important for prediction of species composition in deep ocean.Comment: 13 pages, 7 figures; Theoretical Ecology 201