P4-compatible High-level Synthesis of Low Latency 100 Gb/s Streaming Packet Parsers in FPGAs

Packet parsing is a key step in SDN-aware devices. Packet parsers in SDN networks need to be both reconfigurable and fast, to support the evolving network protocols and the increasing multi-gigabit data rates. The combination of packet processing languages with FPGAs seems to be the perfect match for these requirements. In this work, we develop an open-source FPGA-based configurable architecture for arbitrary packet parsing to be used in SDN networks. We generate low latency and high-speed streaming packet parsers directly from a packet processing program. Our architecture is pipelined and entirely modeled using templated C++ classes. The pipeline layout is derived from a parser graph that corresponds a P4 code after a series of graph transformation rounds. The RTL code is generated from the C++ description using Xilinx Vivado HLS and synthesized with Xilinx Vivado. Our architecture achieves 100 Gb/s data rate in a Xilinx Virtex-7 FPGA while reducing the latency by 45% and the LUT usage by 40% compared to the state-of-the-art.Comment: Accepted for publication at the 26th ACM/SIGDA International Symposium on Field-Programmable Gate Arrays February 25 - 27, 2018 Monterey Marriott Hotel, Monterey, California, 7 pages, 7 figures, 1 tabl

Module-per-Object: a Human-Driven Methodology for C++-based High-Level Synthesis Design

High-Level Synthesis (HLS) brings FPGAs to audiences previously unfamiliar to hardware design. However, achieving the highest Quality-of-Results (QoR) with HLS is still unattainable for most programmers. This requires detailed knowledge of FPGA architecture and hardware design in order to produce FPGA-friendly codes. Moreover, these codes are normally in conflict with best coding practices, which favor code reuse, modularity, and conciseness. To overcome these limitations, we propose Module-per-Object (MpO), a human-driven HLS design methodology intended for both hardware designers and software developers with limited FPGA expertise. MpO exploits modern C++ to raise the abstraction level while improving QoR, code readability and modularity. To guide HLS designers, we present the five characteristics of MpO classes. Each characteristic exploits the power of HLS-supported modern C++ features to build C++-based hardware modules. These characteristics lead to high-quality software descriptions and efficient hardware generation. We also present a use case of MpO, where we use C++ as the intermediate language for FPGA-targeted code generation from P4, a packet processing domain specific language. The MpO methodology is evaluated using three design experiments: a packet parser, a flow-based traffic manager, and a digital up-converter. Based on experiments, we show that MpO can be comparable to hand-written VHDL code while keeping a high abstraction level, human-readable coding style and modularity. Compared to traditional C-based HLS design, MpO leads to more efficient circuit generation, both in terms of performance and resource utilization. Also, the MpO approach notably improves software quality, augmenting parametrization while eliminating the incidence of code duplication.Comment: 9 pages. Paper accepted for publication at The 27th IEEE International Symposium on Field-Programmable Custom Computing Machines, San Diego CA, April 28 - May 1, 201

Bridging the Gap: FPGAs as Programmable Switches

The emergence of P4, a domain specific language, coupled to PISA, a domain specific architecture, is revolutionizing the networking field. P4 allows to describe how packets are processed by a programmable data plane, spanning ASICs and CPUs, implementing PISA. Because the processing flexibility can be limited on ASICs, while the CPUs performance for networking tasks lag behind, recent works have proposed to implement PISA on FPGAs. However, little effort has been dedicated to analyze whether FPGAs are good candidates to implement PISA. In this work, we take a step back and evaluate the micro-architecture efficiency of various PISA blocks. We demonstrate, supported by a theoretical and experimental analysis, that the performance of a few PISA blocks is severely limited by the current FPGA architectures. Specifically, we show that match tables and programmable packet schedulers represent the main performance bottlenecks for FPGA-based programmable switches. Thus, we explore two avenues to alleviate these shortcomings. First, we identify network applications well tailored to current FPGAs. Second, to support a wider range of networking applications, we propose modifications to the FPGA architectures which can also be of interest out of the networking field.Comment: To be published in : IEEE International Conference on High Performance Switching and Routing 202

Caracterização química e avaliação das atividades antibacteriana, antifúngica, antimicobacteriana e citotóxica de Talinum paniculatum

In this study, the bioactivity of Talinum paniculatum was evaluated, a plant widely used in folk medicine. The extract from the T. paniculatum leaves (LE) was obtained by percolation with ethanol-water and then subjecting it to liquid-liquid partitions, yielding hexane (HX), ethyl acetate (EtOAc), butanol (BuOH), and aqueous (Aq) fractions. Screening for antimicrobial activity of the LE and its fractions was evaluated in vitro through broth microdilution method, against thirteen pathogenic and non-pathogenic microorganisms, and the antimycobacterial activity was performed through agar diffusion assay. The cytotoxic concentrations (CC90) for LE, HX, and EtOAc were obtained on BHK-21 cells by using MTT reduction assay. The LE showed activity against Serratia marcescens and Staphylococcus aureus, with Minimum Inhibitory Concentration (MIC) values of 250 and 500 µg/mL, respectively. Furthermore, HX demonstrated outstanding activity against Micrococcus luteus and Candida albicans with a MIC of 31.2 µg/mL in both cases. The MIC for EtOAc also was 31.2 µg/mL against Escherichia coli. Conversely, BuOH and Aq were inactive against all tested microorganisms and LE proved inactive against Mycobacterium tuberculosisand Mycobacterium bovisas well. Campesterol, stigmasterol, and sitosterol were the proposed structures as main compounds present in the EF and HX/EtOAc fractions, evidenced by mass spectrometry. Therefore, LE, HX, and EtOAc from T. paniculatumshowed potential as possible sources of antimicrobial compounds, mainly HX, for presenting low toxicity on BHK-21 cells with excellent Selectivity Index (SI = CC90/MIC) of 17.72 against C. albicans.Neste estudo foi avaliada a bioatividade de Talinum paniculatum, planta amplamente utilizada na medicina popular. O extrato das folhas (EF) de T. paniculatum foi obtido por percolação com etanol-água e, em seguida, submetido à partição líquido-líquido, obtendo-se as frações hexânica (HX), acetato-etílica (AcOEt), butanólica (BuOH) e aquosa (Aq). A triagem para a atividade antimicrobiana do EF e de suas frações foram avaliadas in vitro através do método de microdiluição em caldo contra treze micro-organismos patogênicos e não-patogênicos e, a atividade antimicobacteriana, foi avaliada através do teste de difusão em ágar. As concentrações citotóxicas (CC90) do EF e das frações HX e AcOEt foram obtidas sobre células da linhagem BHK-21 através do ensaio de redução do MTT. O EF mostrou atividade contra Serratia marcescens e Staphylococcus aureus, com valores de concentração inibitória mínima (CIM) de 250 e 500 µg/mL, respectivamente. Além disso, HX demonstrou excelente atividade contra Micrococcus luteus e Candida albicans com uma CIM de 31,2 µg/mL, em ambos os casos. Contra Escherichia coli, a CIM para AcOEt foi também de 31,2 µg/mL. Por outro lado, as frações BuOH e Aq foram inativas contra todos os micro-organismos testados, assim como o EF contra Mycobacterium tuberculosis e Mycobacterium bovis. Campesterol, estigmasterol e sitosterol foram as estruturas propostas como principais compostos presentes no EF e nas frações HX e AcOEt, evidenciadas através de espectrometria de massas. Portanto, o extrato da folha e as frações HX e AcOEt provenientes de T. paniculatum apresentaram potencial como possíveis fontes de compostos antimicrobianos, HX principalmente, por ter apresentado uma baixa toxicidade sobre células BHK-21 com um bom índice de seletividade (IS = CC90/MIC) de 17,72 contra C. albicans

Pervasive gaps in Amazonian ecological research

Biodiversity loss is one of the main challenges of our time,1,2 and attempts to address it require a clear un derstanding of how ecological communities respond to environmental change across time and space.3,4 While the increasing availability of global databases on ecological communities has advanced our knowledge of biodiversity sensitivity to environmental changes,5–7 vast areas of the tropics remain understudied.8–11 In the American tropics, Amazonia stands out as the world’s most diverse rainforest and the primary source of Neotropical biodiversity,12 but it remains among the least known forests in America and is often underrepre sented in biodiversity databases.13–15 To worsen this situation, human-induced modifications16,17 may elim inate pieces of the Amazon’s biodiversity puzzle before we can use them to understand how ecological com munities are responding. To increase generalization and applicability of biodiversity knowledge,18,19 it is thus crucial to reduce biases in ecological research, particularly in regions projected to face the most pronounced environmental changes. We integrate ecological community metadata of 7,694 sampling sites for multiple or ganism groups in a machine learning model framework to map the research probability across the Brazilian Amazonia, while identifying the region’s vulnerability to environmental change. 15%–18% of the most ne glected areas in ecological research are expected to experience severe climate or land use changes by 2050. This means that unless we take immediate action, we will not be able to establish their current status, much less monitor how it is changing and what is being lostinfo:eu-repo/semantics/publishedVersio

Commentaries on viewpoint : physiology and fast marathons

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