34 research outputs found
Ring nucleases deactivate Type III CRISPR ribonucleases by degrading cyclic oligoadenylate
- Author
- A Hatoum-Aslan
- AC Ortmann
- AM Burroughs
- C Rouillon
- CA Schneider
- Christophe Rouillon
- EV Koonin
- F Jiang
- FJ Mojica
- H Liu
- J Schindelin
- Januka S. Athukoralage
- KS Makarova
- KS Makarova
- KS Makarova
- L Deng
- LA Kelley
- M Kazlauskiene
- M Linkert
- Malcolm F. White
- O Niewoehner
- O Wurtzel
- RD Sokolowski
- RE Haurwitz
- RJ Dey
- SA Shmakov
- Sabine Grüschow
- SH Sternberg
- Shirley Graham
- SV Albers
- TN Huynh
- W Jiang
- W Yang
- X Cai
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 30/07/2018
- Field of study
This work was funded by grants from the Biotechnology and Biological Sciences Research Council (REF BB/M000400/1 and BB/M021017/1). MFW is a Wolfson Research Merit Award holder.The CRISPR system provides adaptive immunity against mobile genetic elements in prokaryotes, using small CRISPR RNAs that direct effector complexes to degrade invading nucleic acids1,2,3. Type III effector complexes were recently demonstrated to synthesize a novel second messenger, cyclic oligoadenylate, on binding target RNA4,5. Cyclic oligoadenylate, in turn, binds to and activates ribonucleases and other factors—via a CRISPR-associated Rossman-fold domain—and thereby induces in the cell an antiviral state that is important for immunity. The mechanism of the ‘off-switch’ that resets the system is not understood. Here we identify the nuclease that degrades these cyclic oligoadenylate ring molecules. This ‘ring nuclease’ is itself a protein of the CRISPR-associated Rossman-fold family, and has a metal-independent mechanism that cleaves cyclic tetraadenylate rings to generate linear diadenylate species and switches off the antiviral state. The identification of ring nucleases adds an important insight tothe CRISPR system.PostprintPeer reviewe
Evolution of RNA- and DNA-guided antivirus defense systems in prokaryotes and eukaryotes: common ancestry vs convergence
- Author
- A Azlan
- A Levy
- A Lingel
- A Spang
- A Wutz
- AB Hickman
- B Czech
- BA Buckley
- BH Patel
- C Pasternak
- C Yuan
- CA Kidner
- CA Suttle
- CA Suttle
- D de Jong
- D Dong
- D Holoch
- DB Gammon
- DC Swarts
- DC Swarts
- DC Swarts
- DC Swarts
- E Kaya
- E Svobodova
- E Szathmary
- EC Swart
- ER Westra
- Eugene V. Koonin
- EV Koonin
- EV Koonin
- EV Koonin
- EV Koonin
- EV Koonin
- EV Koonin
- EV Koonin
- EV Koonin
- EV Koonin
- EV Koonin
- EV Koonin
- EV Koonin
- F Crick
- F He
- F Rohwer
- F Rohwer
- G Amitai
- G Hutvagner
- G Hutvagner
- G Meister
- G Sheng
- G Storz
- G Szittya
- H Cerutti
- H Tabara
- H Zhang
- HH Kazazian Jr
- HO Iwakawa
- I Kobayashi
- I Olovnikov
- IJ MacRae
- J Hock
- J Liu
- J Wang
- JA Birchler
- JJ Song
- JK Nunez
- JM Smith
- JS Parker
- JS Parker
- K Bohmert
- K Mukherjee
- KA Majorek
- KS Makarova
- KS Makarova
- KS Makarova
- KS Makarova
- KS Makarova
- L Cerutti
- L Houri-Ze'evi
- L Van Melderen
- LA Marraffini
- LM Iyer
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- M Cao
- M Eigen
- M Hlevnjak
- M Krupovic
- M Krupovic
- M Lapidot
- M Machitani
- M Nowacki
- MA Kidwell
- ML Li
- O Shalem
- OO Abudayyeh
- P Beguin
- P Forterre
- P Forterre
- P Mohanraju
- P Nelson
- PS Salgado
- PW Lau
- R Barrangou
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- RC Wilson
- RP Hayes
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- S Jonas
- S Shmakov
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- SA Shabalina
- SW Ding
- T Yamano
- TB Updegrove
- TC Roberts
- TM Embley
- V Anantharaman
- VV Kapitonov
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- W Martin
- W Martin
- X Ji
- X Qian
- Y Maida
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- Y Wei
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- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Changes to the Fossil Record of Insects through Fifteen Years of Discovery
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- A Arillo
- A Arillo
- A Baz
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- VG Novokshonov
- VG Novokshonov
- VG Novokshonov
- VG Novokshonov
- VG Novokshonov
- VG Novokshonov
- VH Resh
- VM Makarkin
- VN Makarkin
- VN Makarkin
- VN Makarkin
- VN Makarkin
- VN Makarkin
- VN Makarkin
- VN Makarkin
- VN Makarkin
- VN Makarkin
- VS Smith
- VU Dmitriev
- VV Blagoderov
- VV Zherikhin
- VV Zherikhin
- VV Zherikhin
- VV Zherikhin
- VV Zherikhin
- VV Zherikhin
- VV Zherikhin
- VV Zlobin
- VY Nazarenko
- W Etter
- W Kirby
- W Kirby
- W Krzeminski
- W Krzeminski
- W Krzeminski
- W Krzeminski
- W Krzeminski
- W Krzeminski
- W Krzeminski
- W Krzeminski
- W Krzeminski
- W Krzeminski
- W Weitschat
- W Wichard
- W Wichard
- W Wichard
- W Wichard
- W Wichard
- W Zessin
- W Zessin
- W Zessin
- W Zessin
- W Zessin
- WD Maxwell
- WJ Pulawski
- WP McCafferty
- WP McCafferty
- WP McCafferty
- WP McCafferty
- WP McCafferty
- X Delclòs
- X Delclòs
- X Delclòs
- XH Li
- XW Zhang
- Y Wang
- YA Popov
- YA Popov
- YA Popov
- YA Popov
- YA Popov
- YA Popov
- YA Popov
- YA Popov
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YC Hong
- YL Li
- YS Liu
- YS Liu
- YS Liu
- YS Liu
- YS Liu
- YS Liu
- YZ Yao
- YZ Yao
- YZ Yao
- YZ Yao
- YZ Yao
- Z Kvacek
- Z Li
- ZJ Zhang
- ZL Zhang
- ZQ Zhang
- ZW Liu
- Ø Hammer
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- 15/07/2015
- Field of study
The first and last occurrences of hexapod families in the fossil record are compiled from publications up to end-2009. The major features of these data are compared with those of previous datasets (1993 and 1994). About a third of families (>400) are new to the fossil record since 1994, over half of the earlier, existing families have experienced changes in their known stratigraphic range and only about ten percent have unchanged ranges. Despite these significant additions to knowledge, the broad pattern of described richness through time remains similar, with described richness increasing steadily through geological history and a shift in dominant taxa, from Palaeoptera and Polyneoptera to Paraneoptera and Holometabola, after the Palaeozoic. However, after detrending, described richness is not well correlated with the earlier datasets, indicating significant changes in shorter-term patterns. There is reduced Palaeozoic richness, peaking at a different time, and a less pronounced Permian decline. A pronounced Triassic peak and decline is shown, and the plateau from the mid Early Cretaceous to the end of the period remains, albeit at substantially higher richness compared to earlier datasets. Origination and extinction rates are broadly similar to before, with a broad decline in both through time but episodic peaks, including end-Permian turnover. Origination more consistently exceeds extinction compared to previous datasets and exceptions are mainly in the Palaeozoic. These changes suggest that some inferences about causal mechanisms in insect macroevolution are likely to differ as well
New Insights into CRISPR Arrays
- Author
- Publication venue
- 'Mary Ann Liebert Inc'
- Publication date
- Field of study
CRISPR Arrays Away from cas
- Publication venue
- 'Mary Ann Liebert Inc'
- Publication date
- Field of study
Irregular Ventricular Tachycardia as a Mechanism of Stabilization of Mechanoelectrical Processes in Canine Heart under Conditions of Antiorthostatic Hypokinesia
- Author
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Lactobacillus gasseri CRISPR-Cas9 characterization In Vitro reveals a flexible mode of protospacer-adjacent motif recognition
- Author
- A Briner
- AC Komor
- Alexandra E. Briner
- Anja van Brabant Smith
- B Zetsche
- C Anders
- DC Swarts
- DW Morgens
- Elena Maksimova
- EM Anderson
- Emily M. Anderson
- F Wincott
- FA Ran
- J Tan
- JA Doudna
- JF Hultquist
- L Cong
- L Liu
- M Jinek
- Megan Basila
- P Mali
- R Barrangou
- R Sanozky-Dawes
- Rodolphe Barrangou
- RT Leenay
- RT Leenay
- S Chandrasegaran
- S Shmakov
- S Shmakov
- SA Scaringe
- SA Shah
- SH Sternberg
- Shawn McClelland
- Shuang-yong Xu
- T Hart
- T Wang
- Z Strezoska
- Žaklina Strezoska
- Publication venue
- 'Public Library of Science (PLoS)'
- Publication date
- Field of study
Ring nucleases deactivate type III CRISPR ribonucleases by degrading cyclic oligoadenylate
- Author
- A Hatoum-Aslan
- AC Ortmann
- AM Burroughs
- C Rouillon
- CA Schneider
- Christophe Rouillon
- EV Koonin
- F Jiang
- FJ Mojica
- H Liu
- J Schindelin
- Januka S. Athukoralage
- KS Makarova
- KS Makarova
- KS Makarova
- L Deng
- LA Kelley
- M Kazlauskiene
- M Linkert
- Malcolm F. White
- O Niewoehner
- O Wurtzel
- RD Sokolowski
- RE Haurwitz
- RJ Dey
- SA Shmakov
- Sabine Grüschow
- SH Sternberg
- Shirley Graham
- SV Albers
- TN Huynh
- W Jiang
- W Yang
- X Cai
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Machine-learning approach expands the repertoire of anti-CRISPR protein families
- Author
- A Drozdetskiy
- A Krogh
- A Marchler-Bauer
- A Pawluk
- A Pawluk
- A Pawluk
- A Pawluk
- AL Borges
- AL Grazziotin
- AV Wright
- BJ Rauch
- C Canchaya
- D Burstein
- EV Koonin
- EV Koonin
- F He
- GJ Knott
- J Bondy-Denomy
- J Bondy-Denomy
- J Bondy-Denomy
- J Kyte
- J Söding
- JR Brister
- KE Watters
- L Dong
- L Liu
- L Zimmermann
- LB Harrington
- M Steinegger
- ND Marino
- P Geurts
- P Simmonds
- RC Edgar
- S Casjens
- S El-Gebali
- SA Shmakov
- SK Burley
- TN Petersen
- TW Guo
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- Field of study
Electroweak parameters of the z0 resonance and the standard model
- Author
- Abbaneo D
- ABREU P
- Adam W
- Adami F
- ADEVA B
- Adriani O
- Adye T
- Aguilar-Benitez M
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- Benedic D
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- Nielsen BS
- Niessen L
- Nijjhar B
- Nikolaenko V
- Nilsson BS
- Norton PR
- Nowak H
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- Nuttall M
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- O'Neale SW
- O'Neill BP
- Oakham FG
- Obraztsov VF
- Odorici F
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- Oram CJ
- Orava R
- Oreglia MJ
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- Orteu S
- Ostankov AP
- Ouraou A
- Pacheco A
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- Palazzi P
- Palka H
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- Pallin D
- Pan Y
- Pan YB
- Pandoulas D
- Pansart JP
- Panzer-Steindel B
- Papadopoulou TD
- Papalexiou S
- Pape L
- Parker D
- Parrini G
- Paschievici P
- Passalacqua L
- Passaleva G
- Passeri A
- Patel A
- Pater JR
- Paternoster G
- Patricelli S
- Patrick GN
- Patton SJ
- Pawley SJ
- Payne DG
- Payre P
- Pegoraro M
- Pei YJ
- Pepe-Altarelli M
- Perevozchikov V
- Perez P
- Perlas JA
- Pernicka M
- Perret P
- Perret-Galliz D
- Perrier J
- Perrotta A
- Pettier F
- Pevsner A
- Pfister P
- Phillips MJ
- Picchi P
- Piccolo D
- Pieri M
- Pierre F
- Pietrzyk B
- Pilcher JE
- Pimenta M
- Pinfold JL
- Pingot O
- Pinsent AC
- Piroue PA
- Plane DE
- Plasil F
- Plyaskin V
- Poffenberger PR
- Pohl M
- Pol ME
- Poli B
- Polok G
- Poropat P
- Pouladdej A
- Pozhidaev V
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- Pritchard W
- Privitera P
- Produit N
- Proriol J
- Prulhiere F
- Przysiezniak H
- Pullia A
- Putzer A
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- Qian JM
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- Redmond MW
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- Roeser U
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- Romano F
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- Ronchese P
- Roney JM
- Ronnqvist C
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- Rosenberg EI
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- Rosmalen R
- Rosowsky A
- Rossberg S
- Rosselet P
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- Roudeau P
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- Roussarie A
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- Rybicki K
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- Saarikko H
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- Salicio JM
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- Sanguinetti G
- Sannino M
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- Schmiiemann K
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- Schmitz P
- Schneegans M
- Schneider H
- Schopper H
- Schotanus DJ
- Schreiber HJ
- Schreiber S
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- Schuette J
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- Schulte R
- Schulte S
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- Schwarz J
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- Scott I
- Scott WG
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- Segar AM
- Sehgal R
- Seiler PG
- Sekulin RL
- Selvaggi G
- Sens JC
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- Sheer I
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- Skaali TB
- Skjevling G
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- Sobie RJ
- Soederstroem E
- Sopczak A
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- Spartiotis C
- Spassoff T
- Spickermann T
- Spiess B
- Spillantini P
- Spiriti E
- Springer RW
- Sproston M
- Squarcia S
- St Denis R
- Stack H
- Stahl A
- Stanescu C
- Starosta R
- Stavropoulos GD
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- Sultanov GG
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- Viertel G
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- Vogel H
- Vogt H
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- Volponi S
- von Dardel G
- Von der Schmitt H
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- Vorobev I
- Vorobyov AA
- Voulgaris G
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- Vrba V
- Vuilleumier L
- Wachsmuth H
- Wadhwa M
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- Wahl C
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- Walther SM
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- Wang XL
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- Ward DR
- Wasserbaech S
- Watkins PM
- Watson AT
- Watson NK
- Wayne M
- Wear JA
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- Weber FV
- Weber J
- Weber M
- Weilhammer P
- Weill R
- Weisz S
- Wells PS
- Wenaus J
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- Wermes N
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- Wetherell AM
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- Whelan EP
- White M
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- Wickens JH
- Wiedenmann W
- Wikne J
- Wildish T
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- Willmott C
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- Wingerter I
- Winter M
- Winterer VH
- Wittgenstein F
- Witzeling W
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- Wolf G
- Wood NC
- Wormald D
- Wormser G
- Woschnagg K
- Wotschack J
- Wotten SA
- Wright AG
- Wright D
- Wu RJ
- Wu SL
- Wu SL
- Wu SX
- Wu YG
- Wunsch M
- Wyatt TR
- Wyslouch B
- Xie Y
- Xie YY
- Xu D
- Xu R
- Xu YD
- Xu ZZ
- Xue ZL
- Yaari R
- Yamdagni N
- Yan DS
- Yan XJ
- Yang BZ
- Yang CG
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- Yeh SC
- Yekutieli G
- Yepes P
- Yin ZW
- You JM
- Yzerman M
- Zaccardelli C
- Zacharov I
- Zaitsev A
- Zalewska-Bak A
- Zalewski P
- Zehnder L
- Zemp P
- Zeng M
- Zeng Y
- Zeuner W
- Zevgolatakos E
- Zhang DH
- Zhang G
- Zhang J
- Zhang Z
- Zhang ZP
- Zhao W
- Zhou JF
- Zhu RY
- Zhuang HL
- Zichichi A
- Zimin NI
- Zito G
- Zito M
- Zitoun R
- Zobernig G
- Zografou P
- Zomer F
- Zorn GT
- Zukanovich-Funchal R
- Zumerle G
- Zuniga J
- Publication venue
- 'Elsevier BV'
- Publication date
- 01/01/1992
- Field of study
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