1,051 research outputs found
A New Sterol Diglycoside from Conyza floribunda
Chemical investigation of CH2Cl2 and MeOH extracts of Conyza floribunda have led to the isolation of (24S)-ethylcholesta-5, 22E, 25-trien-3-O-glucosyl (1”→ 4’)-rhamnoside (1), (24S)-ethylcholesta-5,25-dien-3-O-α-glucoside (2), cyasterone (3), stigmasta 5, 22-dien-3-acetate (4), stigmasta 5, 22-dien-3-ol (5), spinasta 7, 22-dien-3-ol (6), 3-oxofriedooleanane (7), 3-hydroxyfriedooleanane (8), 3-acetoxyfriedooleanane (9), betullinic acid (10), quercetin 3-O-α-glucoside (11), quercetin (12), myricetin (13) and kaempferol (14). Their structures were determined using spectroscopic and physical methods as well as comparison with data available in the literature.Keywords: Conyza floribunda, asteraceae, triterpenes, sterols, flavonol
An Electron Fixed Target Experiment to Search for a New Vector Boson A' Decaying to e+e-
We describe an experiment to search for a new vector boson A' with weak
coupling alpha' > 6 x 10^{-8} alpha to electrons (alpha=e^2/4pi) in the mass
range 65 MeV < m_A' < 550 MeV. New vector bosons with such small couplings
arise naturally from a small kinetic mixing of the "dark photon" A' with the
photon -- one of the very few ways in which new forces can couple to the
Standard Model -- and have received considerable attention as an explanation of
various dark matter related anomalies. A' bosons are produced by radiation off
an electron beam, and could appear as narrow resonances with small production
cross-section in the trident e+e- spectrum. We summarize the experimental
approach described in a proposal submitted to Jefferson Laboratory's PAC35,
PR-10-009. This experiment, the A' Experiment (APEX), uses the electron beam of
the Continuous Electron Beam Accelerator Facility at Jefferson Laboratory
(CEBAF) at energies of ~1-4 GeV incident on 0.5-10% radiation length Tungsten
wire mesh targets, and measures the resulting e+e- pairs to search for the A'
using the High Resolution Spectrometer and the septum magnet in Hall A. With a
~1 month run, APEX will achieve very good sensitivity because the statistics of
e+e- pairs will be ~10,000 times larger in the explored mass range than any
previous search for the A' boson. These statistics and the excellent mass
resolution of the spectrometers allow sensitivity to alpha'/alpha one to three
orders of magnitude below current limits, in a region of parameter space of
great theoretical and phenomenological interest. Similar experiments could also
be performed at other facilities, such as the Mainz Microtron.Comment: 19 pages, 12 figures, 2 table
Feigenbaum graphs: a complex network perspective of chaos
The recently formulated theory of horizontal visibility graphs transforms
time series into graphs and allows the possibility of studying dynamical
systems through the characterization of their associated networks. This method
leads to a natural graph-theoretical description of nonlinear systems with
qualities in the spirit of symbolic dynamics. We support our claim via the case
study of the period-doubling and band-splitting attractor cascades that
characterize unimodal maps. We provide a universal analytical description of
this classic scenario in terms of the horizontal visibility graphs associated
with the dynamics within the attractors, that we call Feigenbaum graphs,
independent of map nonlinearity or other particulars. We derive exact results
for their degree distribution and related quantities, recast them in the
context of the renormalization group and find that its fixed points coincide
with those of network entropy optimization. Furthermore, we show that the
network entropy mimics the Lyapunov exponent of the map independently of its
sign, hinting at a Pesin-like relation equally valid out of chaos.Comment: Published in PLoS ONE (Sep 2011
The genetic prehistory of southern Africa
Southern and eastern African populations that speak non-Bantu languages with
click consonants are known to harbour some of the most ancient genetic lineages
in humans, but their relationships are poorly understood. Here, we report data
from 23 populations analyzed at over half a million single nucleotide
polymorphisms, using a genome-wide array designed for studying human history.
The southern African Khoisan fall into two genetic groups, loosely
corresponding to the northwestern and southeastern Kalahari, which we show
separated within the last 30,000 years. We find that all individuals derive at
least a few percent of their genomes from admixture with non-Khoisan
populations that began approximately 1,200 years ago. In addition, the east
African Hadza and Sandawe derive a fraction of their ancestry from admixture
with a population related to the Khoisan, supporting the hypothesis of an
ancient link between southern and eastern AfricaComment: To appear in Nature Communication
On the Accessibility of Adaptive Phenotypes of a Bacterial Metabolic Network
The mechanisms by which adaptive phenotypes spread within an evolving population after their emergence are understood fairly well. Much less is known about the factors that influence the evolutionary accessibility of such phenotypes, a pre-requisite for their emergence in a population. Here, we investigate the influence of environmental quality on the accessibility of adaptive phenotypes of Escherichia coli's central metabolic network. We used an established flux-balance model of metabolism as the basis for a genotype-phenotype map (GPM). We quantified the effects of seven qualitatively different environments (corresponding to both carbohydrate and gluconeogenic metabolic substrates) on the structure of this GPM. We found that the GPM has a more rugged structure in qualitatively poorer environments, suggesting that adaptive phenotypes could be intrinsically less accessible in such environments. Nevertheless, on average ∼74% of the genotype can be altered by neutral drift, in the environment where the GPM is most rugged; this could allow evolving populations to circumvent such ruggedness. Furthermore, we found that the normalized mutual information (NMI) of genotype differences relative to phenotype differences, which measures the GPM's capacity to transmit information about phenotype differences, is positively correlated with (simulation-based) estimates of the accessibility of adaptive phenotypes in different environments. These results are consistent with the predictions of a simple analytic theory that makes explicit the relationship between the NMI and the speed of adaptation. The results suggest an intuitive information-theoretic principle for evolutionary adaptation; adaptation could be faster in environments where the GPM has a greater capacity to transmit information about phenotype differences. More generally, our results provide insight into fundamental environment-specific differences in the accessibility of adaptive phenotypes, and they suggest opportunities for research at the interface between information theory and evolutionary biology
Exploiting the pathway structure of metabolism to reveal high-order epistasis
<p>Abstract</p> <p>Background</p> <p>Biological robustness results from redundant pathways that achieve an essential objective, e.g. the production of biomass. As a consequence, the biological roles of many genes can only be revealed through multiple knockouts that identify a <it>set </it>of genes as essential for a given function. The identification of such "epistatic" essential relationships between network components is critical for the understanding and eventual manipulation of robust systems-level phenotypes.</p> <p>Results</p> <p>We introduce and apply a network-based approach for genome-scale metabolic knockout design. We apply this method to uncover over 11,000 minimal knockouts for biomass production in an <it>in silico </it>genome-scale model of <it>E. coli</it>. A large majority of these "essential sets" contain 5 or more reactions, and thus represent complex epistatic relationships between components of the <it>E. coli </it>metabolic network.</p> <p>Conclusion</p> <p>The complex minimal biomass knockouts discovered with our approach illuminate robust essential systems-level roles for reactions in the <it>E. coli </it>metabolic network. Unlike previous approaches, our method yields results regarding high-order epistatic relationships and is applicable at the genome-scale.</p
Low-Energy Probes of a Warped Extra Dimension
We investigate a natural realization of a light Abelian hidden sector in an
extended Randall-Sundrum (RS) model. In addition to the usual RS bulk we
consider a second warped space containing a bulk U(1)_x gauge theory with a
characteristic IR scale of order a GeV. This Abelian hidden sector can couple
to the standard model via gauge kinetic mixing on a common UV brane. We show
that if such a coupling induces significant mixing between the lightest U(1)_x
gauge mode and the standard model photon and Z, it can also induce significant
mixing with the heavier U(1)_x Kaluza-Klein (KK) modes. As a result it might be
possible to probe several KK modes in upcoming fixed-target experiments and
meson factories, thereby offering a new way to investigate the structure of an
extra spacetime dimension.Comment: 26 pages, 1 figure, added references, corrected minor typos, same as
journal versio
Recent acquisition of Helicobacter pylori by Baka Pygmies
Both anatomically modern humans and the gastric pathogen Helicobacter pylori originated in Africa, and both species have been associated for at least 100,000 years. Seven geographically distinct H. pylori populations exist, three of which are indigenous to Africa: hpAfrica1, hpAfrica2, and hpNEAfrica. The oldest and most divergent population, hpAfrica2, evolved within San hunter-gatherers, who represent one of the deepest branches of the human population tree. Anticipating the presence of ancient H. pylori lineages within all hunter-gatherer populations, we investigated the prevalence and population structure of H. pylori within Baka Pygmies in Cameroon. Gastric biopsies were obtained by esophagogastroduodenoscopy from 77 Baka from two geographically separated populations, and from 101 non-Baka individuals from neighboring agriculturalist populations, and subsequently cultured for H. pylori. Unexpectedly, Baka Pygmies showed a significantly lower H. pylori infection rate (20.8%) than non-Baka (80.2%). We generated multilocus haplotypes for each H. pylori isolate by DNA sequencing, but were not able to identify Baka-specific lineages, and most isolates in our sample were assigned to hpNEAfrica or hpAfrica1. The population hpNEAfrica, a marker for the expansion of the Nilo-Saharan language family, was divided into East African and Central West African subpopulations. Similarly, a new hpAfrica1 subpopulation, identified mainly among Cameroonians, supports eastern and western expansions of Bantu languages. An age-structured transmission model shows that the low H. pylori prevalence among Baka Pygmies is achievable within the timeframe of a few hundred years and suggests that demographic factors such as small population size and unusually low life expectancy can lead to the eradication of H. pylori from individual human populations. The Baka were thus either H. pylori-free or lost their ancient lineages during past demographic fluctuations. Using coalescent simulations and phylogenetic inference, we show that Baka almost certainly acquired their extant H. pylori through secondary contact with their agriculturalist neighbors
Carcinoembryonic antigen and cytokeratin 20 in peritoneal cells of cancer patients: are we aware of what we are detecting by mRNA examination?
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