A Genome-Wide Association Study of Diabetic Kidney Disease in Subjects With Type 2 Diabetes

dentification of sequence variants robustly associated with predisposition to diabetic kidney disease (DKD) has the potential to provide insights into the pathophysiological mechanisms responsible. We conducted a genome-wide association study (GWAS) of DKD in type 2 diabetes (T2D) using eight complementary dichotomous and quantitative DKD phenotypes: the principal dichotomous analysis involved 5,717 T2D subjects, 3,345 with DKD. Promising association signals were evaluated in up to 26,827 subjects with T2D (12,710 with DKD). A combined T1D+T2D GWAS was performed using complementary data available for subjects with T1D, which, with replication samples, involved up to 40,340 subjects with diabetes (18,582 with DKD). Analysis of specific DKD phenotypes identified a novel signal near GABRR1 (rs9942471, P = 4.5 x 10(-8)) associated with microalbuminuria in European T2D case subjects. However, no replication of this signal was observed in Asian subjects with T2D or in the equivalent T1D analysis. There was only limited support, in this substantially enlarged analysis, for association at previously reported DKD signals, except for those at UMOD and PRKAG2, both associated with estimated glomerular filtration rate. We conclude that, despite challenges in addressing phenotypic heterogeneity, access to increased sample sizes will continue to provide more robust inference regarding risk variant discovery for DKD.Peer reviewe

Potential of a rhizobacterium Bacillus subtilis (Bbv 57) on Fusarium oxysporum f. sp. gerberae and Meloidogyne incognita infecting Gerbera grown in protected cultivation.

Not AvailableNinety five bacterial strains were isolated from the rhizosphere and soils of flower crops, specifically gerbera, carnation and tuberose, were preliminarily screened against Fusarium oxysporum f. sp. gerberae in vitro along with five elite strains Bbv 57, EPCO 16, EPC 5, EPC 8 and Pf 1 obtained from Department of Plant Pathology, TNAU, Coimbatore, India. The results revealed that the strain Bbv 57 had highest inhibition of 50.00% and showed the maximum value for the assays that is siderophore, hydrogen cyanide, IAA, GA3 and salicylic acid production (3.68 O.D. value; 14.05 μgml-1; 44.40 μg ml-1; 25.28 μg ml-1 and 19.25 μg ml-1 respectively). It also showed resistance to antibiotics namely ampicillin, erythromycin, clindamycin. The highest exopolysaccharides, biofilm production was observed and had lowest protease production clearly indicated that it is non - pathogenic to plants. Further, the polymerase chain reaction using16S rRNA intervening sequencing showed 100% homology to Bacillus subtilis (KF718836) and showed positive for quorum sensing regulator genes of aiiA and comQ. Additionally, the culture filtrate assay also produced significant reduction in egg hatching capacity and juvenile mortality of root-knot nematode Meloidogyne incognita. Further, the HPLC study showed 91.69 μg μl-1 of surfactin with the retention time of 2.304 min and 0.453 μg μl-1 of Iturin with the retention time of 8.739 min at 205 nm. Whereas, GCMS analysis has detected the aliphatic hydrocarbons responsible for antifungal, antibacterial and nematicidal activity.Not Availabl

Biocontrol of wilt-nematode complex infecting gerbera by Bacillus subtilis under protected cultivation

Abstract A strong antibiotic producer, Bacillus subtilis strain Bbv 57 (KF718836), has been utilized for the management of wilt-nematode complex (Fusarium oxysporum f. sp. gerberae, Meloidogyne incognita) in gerbera under greenhouse conditions in the Department of Floriculture, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India. The strain strongly inhibited F. oxysporum f. sp. gerberae (KM523669) mycelial growth to an extent of 44.33 and 63.33%, at 10 and 100 μl, of culture filtrate, respectively. Further, the culture filtrate at 100% concentration exerted lethal effect on nematode eggs (7.00 hatched) and juveniles (87% mortality) compared to control. The analysis of TLC revealed that Bbv 57 showed the cyclic antimicrobial peptides surfactin and iturin that were confirmed by PCR. Strain Bbv 57 was able to produce antifungal and anti-nematicidal activity with reduced wilt incidence (15.33%) and thus holds a great potential for use in the biocontrol of Fusarium wilt-root-knot nematode disease complex in gerbera under greenhouse conditions

Alleviation of Abiotic and Biotic Stresses in Plants by Azospirillum

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