A diagnostic PCR assay for the detection of an Australian epidemic strain of Pseudomonas aeruginosa

Background Chronic lung infection with the bacterium Pseudomonas aeruginosa is one of the hallmarks of cystic fibrosis (CF) and is associated with worsening lung function, increased hospitalisation and reduced life expectancy. A virulent clonal strain of P. aeruginosa (Australian epidemic strain I; AES-I) has been found to be widespread in CF patients in eastern Australia. Methods Suppression subtractive hybridization (SSH) was employed to identify genetic sequences that are present in the AES-I strain but absent from the sequenced reference strain PAO1. We used PCR to evaluate the distribution of several of the AES-I loci amongst a collection of 188 P. aeruginosa isolates which was comprised of 35 AES-I isolates (as determined by PFGE), 78 non-AES-I CF isolates including other epidemic CF strains as well as 69 P. aeruginosa isolates from other clinical and environmental sources. Results We have identified a unique AES-I genetic locus that is present in all 35 AES-I isolates tested and not present in any of the other 153 P. aeruginosa strains examined. We have used this unique AES-I locus to develop a diagnostic PCR and a real-time PCR assay to detect the presence of P. aeruginosa and AES-I in patient sputum samples

Measurement of the production cross section of prompt Ξc0 baryons at midrapidity in pp collisions at √s = 5.02 TeV

The transverse momentum (pT) differential cross section of the charm-strange baryon Ξ0c is measured at midrapidity (|y| < 0.5) via its semileptonic decay into e+Ξ−νe in pp collisions at s√ = 5.02 TeV with the ALICE detector at the LHC. The ratio of the pT-differential Ξ0c-baryon and D0-meson production cross sections is also reported. The measurements are compared with simulations with different tunes of the PYTHIA 8 event generator, with predictions from a statistical hadronisation model (SHM) with a largely augmented set of charm-baryon states beyond the current lists of the Particle Data Group, and with models including hadronisation via quark coalescence. The pT-integrated cross section of prompt Ξ0c-baryon production at midrapidity is also reported, which is used to calculate the baryon-to-meson ratio Ξ0c/D0 = 0.20 ± 0.04 (stat.)+0.08−0.07 (syst.). These results provide an additional indication of a modification of the charm fragmentation from e+e− and e−p collisions to pp collisions

Kaon-proton strong interaction at low relative momentum via femtoscopy in Pb-Pb collisions at the LHC

In quantum scattering processes between two particles, aspects characterizing the strong and Coulomb forces can be observed in kinematic distributions of the particle pairs. The sensitivity to the interaction potential reaches a maximum at low relative momentum and vanishing distance between the two particles. Ultrarelativistic heavy-ion collisions at the LHC provide an abundant source of many hadron species and can be employed as a measurement method of scattering parameters that is complementary to scattering experiments. This study confirms that momentum correlations of particles produced in Pb\u2013Pb collisions at the LHC provide an accurate measurement of kaon\u2013proton scattering parameters at low relative momentum, allowing precise access to the K 12p\u2192K 12p process. This work also validates the femtoscopic measurement in ultrarelativistic heavy-ion collisions as an alternative to scattering experiments and a complementary tool to the study of exotic atoms with comparable precision. In this work, the first femtoscopic measurement of momentum correlations of K 12p(K+p\u203e) and K+p(K 12p\u203e) pairs in Pb\u2013Pb collisions at centre-of-mass energy per nucleon pair of sNN=5.02 TeV registered by the ALICE experiment is reported. The components of the K 12p complex scattering length are extracted and found to be \u211cf0= 120.91\ub10.03(stat) 120.03+0.17(syst) and \u2111f0=0.92\ub10.05(stat) 120.33+0.12(syst). The results are compared with chiral effective field theory predictions as well as with existing data from dedicated scattering and exotic kaonic atom experiments

Kaon–proton strong interaction at low relative momentum via femtoscopy in Pb–Pb collisions at the LHC

In quantum scattering processes between two particles, aspects characterizing the strong and Coulomb forces can be observed in kinematic distributions of the particle pairs. The sensitivity to the interaction potential reaches a maximum at low relative momentum and vanishing distance between the two particles. Ultrarelativistic heavy-ion collisions at the LHC provide an abundant source of many hadron species and can be employed as a measurement method of scattering parameters that is complementary to scattering experiments. This study confirms that momentum correlations of particles produced in Pb–Pb collisions at the LHC provide an accurate measurement of kaon–proton scattering parameters at low relative momentum, allowing precise access to the K−p → K−p process. This work also validates the femtoscopic measurement in ultrarelativistic heavy-ion collisions as an alternative to scattering experiments and a complementary tool to the study of exotic atoms with comparable precision. In this work, the first femtoscopic measurement of momentum correlations of K−p (K+p) and K+p (K−p) pairs in Pb–Pb collisions at centre-of-mass energy per nucleon pair of √sNN = 5.02 TeV registered by the ALICE experiment is reported. The components of the K−p complex scattering length are extracted and found to be f0 = −0.91 ± 0.03(stat)+0.17 −0.03(syst) and f0 = 0.92 ± 0.05(stat)+0.12 −0.33(syst). The results are compared with chiral effective field theory predictions as well as with existing data from dedicated scattering and exotic kaonic atom experiments

Kaon-proton strong interaction at low relative momentum via femtoscopy in Pb-Pb collisions at the LHC

In quantum scattering processes between two particles, aspects characterizing the strong and Coulomb forces can be observed in kinematic distributions of the particle pairs. The sensitivity to the interaction potential reaches a maximum at low relative momentum and vanishing distance between the two particles. Ultrarelativistic heavy-ion collisions at the LHC provide an abundant source of many hadron species and can be employed as a measurement method of scattering parameters that is complementary to scattering experiments. This study confirms that momentum correlations of particles produced in Pb–Pb collisions at the LHC provide an accurate measurement of kaon–proton scattering parameters at low relative momentum, allowing precise access to the K−p→K−p process. This work also validates the femtoscopic measurement in ultrarelativistic heavy-ion collisions as an alternative to scattering experiments and a complementary tool to the study of exotic atoms with comparable precision. In this work, the first femtoscopic measurement of momentum correlations of K−p(K+p‾) and K+p(K−p‾) pairs in Pb–Pb collisions at centre-of-mass energy per nucleon pair of sNN=5.02 TeV registered by the ALICE experiment is reported. The components of the K−p complex scattering length are extracted and found to be ℜf0=−0.91±0.03(stat)−0.03+0.17(syst) and ℑf0=0.92±0.05(stat)−0.33+0.12(syst). The results are compared with chiral effective field theory predictions as well as with existing data from dedicated scattering and exotic kaonic atom experiments

Measurement of the Cross Sections of Ξ0c and Ξ+c Baryons and of the Branching-Fraction Ratio BR(Ξ0c→Ξ−e+νe)/BR(Ξ0c→Ξ−π+) in pp Collisions at √s=13 TeV

The pT-differential cross sections of prompt charm-strange baryons Ξ0c and Ξ+c were measured at midrapidity (|y|<0.5) in proton-proton (pp) collisions at a center-of-mass energy √s=13  TeV with the ALICE detector at the LHC. The Ξ0c baryon was reconstructed via both the semileptonic decay (Ξ−e+νe) and the hadronic decay (Ξ−π+) channels. The Ξ+c baryon was reconstructed via the hadronic decay (Ξ−π+π+) channel. The branching-fraction ratio BR(Ξ0c→Ξ−e+νe)/BR(Ξ0c→Ξ−π+)=1.38±0.14(stat)±0.22(syst) was measured with a total uncertainty reduced by a factor of about 3 with respect to the current world average reported by the Particle Data Group. The transverse momentum (pT) dependence of the Ξ0c- and Ξ+c-baryon production relative to the D0 meson and to the Σ0,+,++c- and Λ+c-baryon production are reported. The baryon-to-meson ratio increases toward low pT up to a value of approximately 0.3. The measurements are compared with various models that take different hadronization mechanisms into consideration. The results provide stringent constraints to these theoretical calculations and additional evidence that different processes are involved in charm hadronization in electron-positron (e+e−) and hadronic collisions

Kaon–proton strong interaction at low relative momentum via femtoscopy in Pb–Pb collisions at the LHC

In quantum scattering processes between two particles, aspects characterizing the strong and Coulomb forces can be observed in kinematic distributions of the particle pairs. The sensitivity to the interaction potential reaches a maximum at low relative momentum and vanishing distance between the two particles. Ultrarelativistic heavy-ion collisions at the LHC provide an abundant source of many hadron species and can be employed as a measurement method of scattering parameters that is complementary to scattering experiments. This study confirms that momentum correlations of particles produced in Pb–Pb collisions at the LHC provide an accurate measurement of kaon–proton scattering parameters at low relative momentum, allowing precise access to the K−p→K−p process. This work also validates the femtoscopic measurement in ultrarelativistic heavy-ion collisions as an alternative to scattering experiments and a complementary tool to the study of exotic atoms with comparable precision. In this work, the first femtoscopic measurement of momentum correlations of K−p(K+p‾) and K+p(K−p‾) pairs in Pb–Pb collisions at centre-of-mass energy per nucleon pair of sNN=5.02 TeV registered by the ALICE experiment is reported. The components of the K−p complex scattering length are extracted and found to be ℜf0=−0.91±0.03(stat)−0.03+0.17(syst) and ℑf0=0.92±0.05(stat)−0.33+0.12(syst). The results are compared with chiral effective field theory predictions as well as with existing data from dedicated scattering and exotic kaonic atom experiments

Measurement of the production cross section of prompt Ξc0 baryons at midrapidity in pp collisions at √s = 5.02 TeV

The transverse momentum (pT) differential cross section of the charm-strange baryon Ξ0c is measured at midrapidity (|y| < 0.5) via its semileptonic decay into e+Ξ−νe in pp collisions at s√ = 5.02 TeV with the ALICE detector at the LHC. The ratio of the pT-differential Ξ0c-baryon and D0-meson production cross sections is also reported. The measurements are compared with simulations with different tunes of the PYTHIA 8 event generator, with predictions from a statistical hadronisation model (SHM) with a largely augmented set of charm-baryon states beyond the current lists of the Particle Data Group, and with models including hadronisation via quark coalescence. The pT-integrated cross section of prompt Ξ0c-baryon production at midrapidity is also reported, which is used to calculate the baryon-to-meson ratio Ξ0c/D0 = 0.20 ± 0.04 (stat.)+0.08−0.07 (syst.). These results provide an additional indication of a modification of the charm fragmentation from e+e− and e−p collisions to pp collisions