Development of a methodology for molecular genetic monitoring for the cholera causative agent

Background. The ongoing cholera pandemic determines the relevance of the development and improvement of methods for analysis of data on genome-wide sequencing of the cholera pathogen. This is of particular importance in the light of the challenges of import substitution of foreign products, including software. The aim of the study was to develop a methodology for molecular genetic monitoring for the cholera causative agent using online geographic information system (GIS) and analysis with its help of strains isolated in Russia earlier. Materials and methods. Data from genome-wide sequencing of 2598 toxigenic (ctxAB+tcpA+) strains of V. cholerae O1 El Tor, both obtained by the authors on the MiSeq (Illumina) platform, and retrieved from the NCBI database were used in the study. The SNP analysis software was developed in the Java and Python programming languages. Cytoscape program was used to visualize the dendrogram. The development of online GIS was carried out using the programming languages HTML, JavaScript and PHP. The freely distributed Leaflet library written in JavaScript was used as the core. Maps obtained from the OpenStreetMap community were used as cartographic data. Results and discussion. A universal set of SNPs and software have been developed to analyze the data of genome-wide sequencing of cholera vibrio strains. It was shown that the majority of strains were distributed among several large clusters. The most closely related strains for cholera vibrions isolated in Russia since 2001 have been identified. An online GIS "Molecular genetic monitoring for V. cholerae" has been created, which allows the recognition of closely related strains directly on an electronic map

USAGE OF GIS-TECHNOLOGIES BASED ON THE SPATIAL ANALYSIS FOR DEVELOPMENT OF THE RISK ASSESSMENT TECHNIQUES OF POTENTIAL HAZARD OF ROSTOV REGION‘S TERRITORIES DUE TO ANTHRAX

Purpose: to develop the methodology for risk-assessment of the potential hazard of the Rostov region’s territory due to anthrax based on the spatial analysis, independent of the administrative division.Materials and Methods: for development the risk-based assessment of potential hazards of territory due to anthrax the registration data of cases for 132 years have been used. The construction of risk cartograms were carried out on the basis of biweight distribution of stationary unfavorable places due to anthrax.Results: the average value of the epizootic index and density of stationary unfavorable places due to anthrax are calculated for 413 administrative units of the Rostov region.Summary: the identification of «risk areas» by using risk-based methodology would provide the more accurate results than the zoning due to administrative territories

Proximity effects and characteristic lengths in ferromagnet-superconductor structures

We present an extensive theoretical investigation of the proximity effects that occur in Ferromagnet/Superconductor ($F/S$) systems. We use a numerical method to solve self consistently the Bogoliubov-de Gennes equations in the continuum. We obtain the pair amplitude and the local density of states (DOS), and use these results to extract the relevant lengths characterizing the leakage of superconductivity into the magnet and to study spin splitting into the superconductor. These phenomena are investigated as a function of parameters such as temperature, magnet polarization, interfacial scattering, sample size and Fermi wavevector mismatch, all of which turn out to have important influence on the results. These comprehensive results should help characterize and analyze future data and are shown to be in agreement with existing experiments.Comment: 24 pages, including 26 figure

Systematics of Inclusive Photon Production in 158 AGeV Pb Induced Reactions on Ni, Nb, and Pb Targets

The multiplicity of inclusive photons has been measured on an event-by-event basis for 158 AGeV Pb induced reactions on Ni, Nb, and Pb targets. The systematics of the pseudorapidity densities at midrapidity (rho_max) and the width of the pseudorapidity distributions have been studied for varying centralities for these collisions. A power law fit to the photon yield as a function of the number of participating nucleons gives a value of 1.13+-0.03 for the exponent. The mean transverse momentum, , of photons determined from the ratio of the measured electromagnetic transverse energy and photon multiplicity, remains almost constant with increasing rho_max. Results are compared with model predictions.Comment: 16 pages including 4 figure

Scaling of Particle and Transverse Energy Production in 208Pb+208Pb collisions at 158 A GeV

Transverse energy, charged particle pseudorapidity distributions and photon transverse momentum spectra have been studied as a function of the number of participants (N_{part}) and the number of binary nucleon-nucleon collisions (N_{coll}) in 158 A GeV Pb+Pb collisions over a wide impact parameter range. A scaling of the transverse energy pseudorapidity density at midrapidity as N_{part}^{1.08 \pm 0.06} and N_{coll}^{0.83 \pm 0.05} is observed. For the charged particle pseudorapidity density at midrapidity we find a scaling as N_{part}^{1.07 \pm 0.04} and N_{coll}^{0.82 \pm 0.03}. This faster than linear scaling with N_{part} indicates a violation of the naive Wounded Nucleon Model.Comment: 13 pages, 16 figures, submitted to European Physical Journal C (revised results for scaling exponents

The Dipole Magnet Design for the ALICE DiMuon Arm Spectrometer

An essential part of the DiMuon Arm Spectrometer of the ALICE experiment is a conventional Dipole Magnet of about 890 tons which provides the bending power to measure the momenta of muons. The JINR engineering design of the Dipole Magnet, technical characteristics and description of the proposed manufacturing procedure are presented. The proposed Coil fabrication technique is based on winding of flat pancakes, which are subsequently bent on cylindrical mandrels. The pancakes are then stacked and cured with prepreg insulation. The method is demonstrated on hand of the prototype II, which consists of a pancake made with full-size aluminium conductor. Some details of electromagnetic and mechanical calculations are described. The results of measuring of mechanical and electrical characteristics of materials related to the coil composite structure are discussed

Study of Spin and Decay-Plane Correlations of W Bosons in the e+e- -> W+W- Process at LEP

Data collected at LEP at centre-of-mass energies \sqrt(s) = 189 - 209 GeV are used to study correlations of the spin of W bosons using e+e- -> W+W- -> lnqq~ events. Spin correlations are favoured by data, and found to agree with the Standard Model predictions. In addition, correlations between the W-boson decay planes are studied in e+e- -> W+W- -> lnqq~ and e+e- -> W+W- -> qq~qq~ events. Decay-plane correlations, consistent with zero and with the Standard Model predictions, are measured

Ultrarelativistic sources in nonlinear electrodynamics

The fields of rapidly moving sources are studied within nonlinear electrodynamics by boosting the fields of sources at rest. As a consequence of the ultrarelativistic limit the delta-like electromagnetic shock waves are found. The character of the field within the shock depends on the theory of nonlinear electrodynamics considered. In particular, we obtain the field of an ultrarelativistic charge in the Born-Infeld theory.Comment: 10 pages, 3 figure

Measurement of the Cross Section for Open-Beauty Production in Photon-Photon Collisions at LEP

The cross section for open-beauty production in photon-photon collisions is measured using the whole high-energy and high-luminosity data sample collected by the L3 detector at LEP. This corresponds to 627/pb of integrated luminosity for electron-positron centre-of-mass energies from 189GeV to 209GeV. Events containing b quarks are identified through their semi-leptonic decay into electrons or muons. The e+e- -> e+e-b b~X cross section is measured within our fiducial volume and then extrapolated to the full phase space. These results are found to be in significant excess with respect to Monte Carlo predictions and next-to-leading order QCD calculations