123 research outputs found
It is all in the looks: A rapid field-based visual assessment tool for evaluating the spawning likelihood of the Asian green mussel, Perna viridis (Linnaeus, 1758)
Numerous interceptions of Perna viridis on vessels entering Western Australian waters prompted the development of a rapid field-based assessment technique for determining reproductive status and hence spawning likelihood of P. viridis. The visual assessment tool and spawning likelihood matrix were developed using correlations between laboratory-based assessments of P. viridis size, colour and egg size in combination with field-based validations from mussels collected on vessels in Western Australian waters. The spawning likelihood matrix provides an immediate indicator of whether the mussel is low, medium or high likelihood of spawning. Mussels were recorded initiating gonad tissue development from approximately 6.5 mm in length, with the mean size of mature animals 59.6 mm. There was a positive correlation between mussel size and stage of reproductive development. Gonad colour, however, appeared to be a more accurate indicator of gonad maturity than mussel size. Female mussels showed a decrease in gonad colour intensity following spawning. Mussels that scored 1 for colour (potential score 1–3) generally had a low proportion of mature eggs (< 70 % mature eggs). Over 60% of the mussels with a colour score of 2 contained 70–100% mature eggs, indicating the capacity for further spawning. Mussels were assigned an overall spawning likelihood score (through the spawning likelihood matrix) based on the proportion of the visceral mass occupied by gonad tissues (% gonad cover, value from 1–3) and overall colour of gonads (value from 1–3). The spawning likelihood score was significantly related to the percentage of mature eggs present, and hence the spawning potential of the mussel. The matrix provides an immediate indicator of the risk of spawning posed by the sample. As such, it is expected that application of the matrix in situ would enable the potential likelihood posed by P. viridis translocated on vessels to be determined quickly and efficiently
Use of mixed-type data clustering algorithm for characterizing temporal and spatial distribution of biosecurity border detections of terrestrial non-indigenous species
Appropriate inspection protocols and mitigation strategies are a critical component of effective biosecurity measures, enabling implementation of sound management decisions. Statistical models to analyze biosecurity surveillance data are integral to this decision-making process. Our research focuses on analyzing border interception biosecurity data collected from a Class A Nature Reserve, Barrow Island, in Western Australia and the associated covariates describing both spatial and temporal interception patterns. A clustering analysis approach was adopted using a generalization of the popular k-means algorithm appropriate for mixed-type data. The analysis approach compared the efficiency of clustering using only the numerical data, then subsequently including covariates to the clustering. Based on numerical data only, three clusters gave an acceptable fit and provided information about the underlying data characteristics. Incorporation of covariates into the model suggested four distinct clusters dominated by physical location and type of detection. Clustering increases interpretability of complex models and is useful in data mining to highlight patterns to describe underlying processes in biosecurity and other research areas. Availability of more relevant data would greatly improve the model. Based on outcomes from our research we recommend broader use of cluster models in biosecurity data, with testing of these models on more datasets to validate the model choice and identify important explanatory variables
Investigating the cryptogenic status of the sea squirt Didemnum perlucidum (Tunicata, Ascidiacea) in Australia based on a molecular study of its global distribution
Didemnid species are assessed as species with a high invasive potential for Australia and as such are listed as target species for both state and national monitoring programs. The presence of the sea squirt Didemnum perlucidum (Monniot, 1983) was first documented in Australia in 2010 and has since then been detected extensively throughout the state of Western Australia and in the Northern Territory. These detections have raised important questions as to the origin and potential impact of this species in Australia. The current study was initiated to review the current known global geographic range of D. perlucidum and to obtain specimens that could support molecular studies aimed at evaluating the potential origin of this species in Australia. Characterization of 5’ COI mitochondrial sequences from 286 specimens revealed a remarkably low level of genetic diversity across the current known range of D. perlucidum and the existence of one main widespread genetic haplotype. Such findings suggest that all locations sampled in this study may in fact represent introductions of D. perlucidum and that the natural native range of the species remains unknown. Our demonstration that specimens (n=187) originating from across a broad expanse of the Australian West Coast were comprised of a single haplotype also lends support to the hypothesis that D. perlucidum is a species that has been introduced recently into Australia. This hypothesis is supported by the fact that D. perlucium distribution in Australia is mostly confined to artificial structures, it has displayed invasive characteristics, and its presence is now being detected across an increasingly wide geographical area. Given the demonstrated low level of genetic COI variation across its known global distribution, lack of clarity around its native range, and limited availability of data on this species globally, we recognize the requirement for further work to more fully elucidate the exact origins and patterns of distribution of D. perlucidum in Australia. This study represents the most comprehensive mapping of the current global distribution of D. perlucidum conducted to date and will hopefully motivate further studies aimed at elucidating this species biology, origin, high-risk routes and impacts
Biosecurity risks posed by a large sea-going passenger vessel: Challenges of terrestrial arthropod species detection and eradication
Large sea-going passenger vessels can pose a high biosecurity risk. The risk posed by marine species is well documented, but rarely the risk posed by terrestrial arthropods. We conducted the longest running, most extensive monitoring program of terrestrial arthropods undertaken on board a passenger vessel. Surveillance was conducted over a 19-month period on a large passenger (cruise) vessel that originated in the Baltic Sea (Estonia). The vessel was used as an accommodation facility to house workers at Barrow Island (Australia) for 15 months, during which 73,061 terrestrial arthropods (222 species - four non-indigenous (NIS) to Australia) were collected and identified on board. Detection of Tribolium destructor Uytt., a high-risk NIS to Australia, triggered an eradication effort on the vessel. This effort totalled more than 13,700 human hours and included strict biosecurity protocols to ensure that this and other non-indigenous species (NIS) were not spread from the vessel to Barrow Island or mainland Australia. Our data demonstrate that despite the difficulties of biosecurity on large vessels, stringent protocols can stop NIS spreading from vessels, even where vessel-wide eradication is not possible. We highlight the difficulties associated with detecting and eradicating NIS on large vessels and provide the first detailed list of species that inhabit a vessel of this kind
A pilot metagenomic study reveals that community derived mobile phones are reservoirs of viable pathogenic microbes
There is increasing attention focussed on the risks associated with mobile phones possibly serving as ‘Trojan Horse’ fomites for microbial transmission in healthcare settings. However, little is reported on the presence of microbes on community derived mobile phones which in 2021, numbered in the billions in circulation with majority being used on a daily basis. Identify viable microbial organisms swabbed from smartphones on a university campus. Entire surfaces of 5 mobile phones were swabbed and examined for their microbial content using pre-agar-based growths followed by downstream DNA metagenomic next-generation sequencing analysis. All phones were contaminated with viable microbes. 173 bacteria, 8 fungi, 8 protists, 53 bacteriophages, 317 virulence factor genes and 41 distinct antibiotic resistant genes were identified. While this research represents a pilot study, the snapshot metagenomic analysis of samples collected from the surface of mobile phones has revealed the presence of a large population of viable microbes and an array of antimicrobial resistant factors. With billions of phones in circulation, these devices might be responsible for the rise of community acquired infections. These pilot results highlight the importance of public health authorities considering mobile phones as ‘Trojan Horse’ devices for microbial transmission and ensure appropriate decontamination campaigns are implemented
Set shifting and reversal learning in patients with bipolar disorder or schizophrenia
Background. Bipolar disorder and schizophrenia have both been associated with deficits in extra-dimensional set shifting (EDS). Deficits in reversal learning (RL) have also been shown in schizophrenia but not in bipolar disorder. This study sought to assess the specificity of these findings in a direct comparison of clinically stable patients with each disorder. Method. The intra-dimensional/extra-dimensional (IDED) set-shifting task, part of the Cambridge Neuropsychological Test Automated Battery (CANTAB), was administered to 30 patients with schizophrenia, 47 with bipolar disorder and a group of 44 unaffected controls. EDS and RL errors were compared between the groups and related to measures of current and past psychiatric symptoms and medication. Results. Both groups of patients with schizophrenia or bipolar disorder made more EDS and RL errors than controls. Neither measure separated the two disorders, even when the analysis was restricted to euthymic patients. No relationship was found with prescribed medication. Conclusions. Patients with bipolar disorder or schizophrenia show common deficits in EDS and RL. These deficits do not seem to be attributable to current symptoms and are consistent with disrupted networks involving the ventral prefrontal cortex
A common neural system mediating two different forms of social judgement
Background: A wide range of neuropsychiatric conditions, including schizophrenia and autistic spectrum disorder (ASD), are associated with impairments in social function. Previous studies have shown that individuals with schizophrenia and ASD have deficits in making a wide range of social judgements from faces, including decisions related to threat (such as judgements of approachability) and decisions not related to physical threat (such as judgements of intelligence). We have investigated healthy control participants to see whether there is a common neural system activated during such social decisions, on the basis that deficits in this system may contribute to the impairments seen in these disorders. Method: We investigated the neural basis of social decision making during judgements of approachability and intelligence from faces in 24 healthy participants using functional magnetic resonance imaging (fMRI). We used conjunction analysis to identify common brain regions activated during both tasks. Results: Activation of the amygdala, medial prefrontal cortex, inferior prefrontal cortex and cerebellum was seen during performance of both social tasks, compared to simple gender judgements from the same stimuli. Task-specific activations were present in the dorsolateral prefrontal cortex in the intelligence task and in the inferior and middle temporal cortex in the approachability task. Conclusions: The present study identified a common network of brain regions activated during the performance of two different forms of social judgement from faces. Dysfunction of this network is likely to contribute to the broad-ranging deficits in social function seen in psychiatric disorders such as schizophrenia and ASD
Experimental summary 1988
1. Disease complexes in wheat field screening trials.
2. Glasshouse screening for wheat leaf disease resistance.
3. Effect of phosphate, stand density and Rovral on Pleiochaeta setosa in lupins.
4. Genotype and rvral for Pleichaeta setosa in lupins.
5. Control of Septoria in early sown wheat.
6. Controlling Pyrenophora graminea leaf stripe in barley.
7. Effect of environment on leaf stripe in barley.
8. Unusual seed quality problems
Biology, invasion and management of the agricultural invader: Fall armyworm, Spodoptera frugiperda (Lepidoptera: Noctuidae)
The fall armyworm (FAW), Spodoptera frugiperda (J. E. Smith), is native to the Americas. It has rapidly invaded 47 African countries and 18 Asian countries since the first detection of invasion into Nigeria and Ghana in 2016. It is regarded as a super pest based on its host range (at least 353 host plants), its inherent ability to survive in a wide range of habitats, its strong migration ability, high fecundity, rapid development of resistance to insecticides/viruses and its gluttonous characteristics. The inherently superior biological characteristics of FAW contribute to its invasiveness. Integrated pest management (IPM) of FAW has relied on multiple applications of monitoring and scouting, agricultural control, chemical pesticides, viral insecticides, sex attractants, bio-control agents (parasitoids, predators and entomopathogens) and botanicals. Knowledge gaps remain to be filled to: (1) understand the invasive mechanisms of S. frugiperda; (2) understand how to prevent its further spread and (3) provide better management strategies. This review summarizes the biological characters of FAW, their association with its invasiveness and IPM strategies, which may provide further insights for future management
Neurocognition in individuals at high familial risk of mood disorders with or without subsequent onset of depression
Background
Neurocognitive performance deficits have been observed in mood disorder patients and their unaffected relatives and may therefore qualify as endophenotypes. However, the precise time course of neurocognitive deficits has not been studied so that it is unknown whether neurocognitive abnormalities reflect the early effects of familial vulnerability to mood disorders or if they emerge at illness onset.
Method
A neuropsychological test battery was administered at baseline and after a 2-year follow-up interval in 111 initially unaffected young adults at high familial risk of mood disorders and 93 healthy controls (HC). During the follow-up period, 20 high-risk subjects developed major depressive disorder (HR-MDD), with the remainder remaining well (HR-well). Linear mixed-effects models were used to investigate differences and longitudinal changes in the domains of attentional processing, working memory, verbal learning and memory, and cognitive flexibility.
Results
Reduced long delay verbal memory and extradimensional set-shifting performance across both time points were found in the HR-well group relative to controls. The HR-MDD group displayed decreased extradimensional set-shifting abilities across both time points as compared with the HC group only. There were no significant performance differences between the two high-risk groups.
Conclusions
Reduced verbal memory and cognitive flexibility are familial trait markers for vulnerability to mood disorders in individuals with a close family history of bipolar disorder. Both neurocognitive performance deficits appear to be relatively stable over a 2-year time period and do not appear to be linked to the onset of MDD. These findings support their use as stable quantitative endophenotypes for mood disorders
- …