Morphological Stasis abd Molecular Divergence in the Intercontinental Disjunct Genus Datisca (Datiscaceae)

The genus Datisca comprises two species and has an intercontinentally disjunct distribution: D. cannabina is native to southwest and central Asia, whereas D. glomerata is distributed from northern California to northern Baja California. In 1975, Axelrod proposed a geohistorical scenario to account for such Madrean-Tethyan links, suggesting that these disjunctions resulted from migration across the mid-Atlantic from the Paleogene up to the Neogene, approximately 23 to 65 m.y.a. The two species are quite similar in most phenotypic traits which have been studied to date. The major difference between the two involves their breeding system: D. cannabina is dioecious while D. glomerata is apparently androdioecious. Despite these similarities, Nei\u27s mean genetic identity between the two species is I = 0.142. This is one of the lowest values yet reported for congeneric flowering plants and provides evidence for an ancient origin of the disjunction. Furthermore, the fact that the western populations of D. cannabina have a much higher genetic identity value with D. glomerata than does the eastern population supports the idea that dispersal occurred across the Atlantic. In addition, the population genetic structure of D. glomerata is consistent with an androdioecious breeding system

Some perspective on Molecular Ecology perspectives: Are women being left out?

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/149698/1/mec15063_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/149698/2/mec15063.pd

Some perspective on Molecular Ecology perspectives: Are women being left out?

Peer Reviewedhttps://deepblue.lib.umich.edu/bitstream/2027.42/149698/1/mec15063_am.pdfhttps://deepblue.lib.umich.edu/bitstream/2027.42/149698/2/mec15063.pd

A target enrichment method for gathering phylogenetic information from hundreds of loci: An example from the Compositae.

UnlabelledPremise of the studyThe Compositae (Asteraceae) are a large and diverse family of plants, and the most comprehensive phylogeny to date is a meta-tree based on 10 chloroplast loci that has several major unresolved nodes. We describe the development of an approach that enables the rapid sequencing of large numbers of orthologous nuclear loci to facilitate efficient phylogenomic analyses. •Methods and resultsWe designed a set of sequence capture probes that target conserved orthologous sequences in the Compositae. We also developed a bioinformatic and phylogenetic workflow for processing and analyzing the resulting data. Application of our approach to 15 species from across the Compositae resulted in the production of phylogenetically informative sequence data from 763 loci and the successful reconstruction of known phylogenetic relationships across the family. •ConclusionsThese methods should be of great use to members of the broader Compositae community, and the general approach should also be of use to researchers studying other families

Functional androdioecy in the flowering plant Datisca glomerata

This scanned article is provided to correct an error on the publisher’s website. The online version has incorrectly given the first author name as “Listen, Aaron” rather than the correct, “Liston, Aaron.” If using this article, please cite the first author correctly

Review of the Application of Modern Cytogenetic Methods (FISH/GISH) to the Study of Reticulation (Polyploidy/Hybridisation).

The convergence of distinct lineages upon interspecific hybridisation, including when accompanied by increases in ploidy (allopolyploidy), is a driving force in the origin of many plant species. In plant breeding too, both interspecific hybridisation and allopolyploidy are important because they facilitate introgression of alien DNA into breeding lines enabling the introduction of novel characters. Here we review how fluorescence in situ hybridisation (FISH) and genomic in situ hybridisation (GISH) have been applied to: 1) studies of interspecific hybridisation and polyploidy in nature, 2) analyses of phylogenetic relationships between species, 3) genetic mapping and 4) analysis of plant breeding materials. We also review how FISH is poised to take advantage of nextgeneration sequencing (NGS) technologies, helping the rapid characterisation of the repetitive fractions of a genome in natural populations and agricultural plants.This work was supported by NSF grant DEB-0922003

EvoPipes.net: Bioinformatic Tools for Ecological and Evolutionary Genomics

Recent increases in the production of genomic data are yielding new opportunities and challenges for biologists. Among the chief problems posed by next-generation sequencing are assembly and analyses of these large data sets. Here we present an online server, http://EvoPipes.net, that provides access to a wide range of tools for bioinformatic analyses of genomic data oriented for ecological and evolutionary biologists. The EvoPipes.net server includes a basic tool kit for analyses of genomic data including a next-generation sequence cleaning pipeline (SnoWhite), scaffolded assembly software (SCARF), a reciprocal best-blast hit ortholog pipeline (RBH Orthologs), a pipeline for reference protein-based translation and identification of reading frame in transcriptome and genomic DNA (TransPipe), a pipeline to identify gene families and summarize the history of gene duplications (DupPipe), and a tool for developing SSRs or microsatellites from a transcriptome or genomic coding sequence collection (findSSR). EvoPipes.net also provides links to other software developed for evolutionary and ecological genomics, including chromEvol and NU-IN, as well as a forum for discussions of issues relating to genomic analyses and interpretation of results. Overall, these applications provide a basic bioinformatic tool kit that will enable ecologists and evolutionary biologists with relatively little experience and computational resources to take advantage of the opportunities provided by next-generation sequencing in their systems

Life history traits and phenotypic selection among sunflower crop–wild hybrids and their wild counterpart: implications for crop allele introgression

Hybridization produces strong evolutionary forces. In hybrid zones, selection can differentially occur on traits and selection intensities may differ among hybrid generations. Understanding these dynamics in crop–wild hybrid zones can clarify crop-like traits likely to introgress into wild populations and the particular hybrid generations through which introgression proceeds. In a field experiment with four crop–wild hybrid Helianthus annuus (sunflower) cross types, we measured growth and life history traits and performed phenotypic selection analysis on early season traits to ascertain the likelihood, and routes, of crop allele introgression into wild sunflower populations. All cross types overwintered, emerged in the spring, and survived until flowering, indicating no early life history barriers to crop allele introgression. While selection indirectly favored earlier seedling emergence and taller early season seedlings, direct selection only favored greater early season leaf length. Further, there was cross type variation in the intensity of selection operating on leaf length. Thus, introgression of multiple early season crop-like traits, due to direct selection for greater early season leaf length, should not be impeded by any cross type and may proceed at different rates among generations. In sum, alleles underlying early season sunflower crop-like traits are likely to introgress into wild sunflower populations