Bio-optical properties of the cyanobacterium <i>Nodularia spumigena</i>

In the last century, an increasing number of extreme weather events have been experienced across the globe. These events have also been linked to changes in water quality, especially due to heavy rains, flooding, or droughts. In terms of blue economic activities, harmful algal bloom events can pose a major threat, especially when they become widespread and last for several days. We present and discuss advanced measurements of a bloom dominated by the cyanobacterium Nodularia spumigena conducted by hyperspectral optical technologies via experiments of opportunity. Absorption coefficients, absorbance and fluorescence were measured in the laboratory, and these data are available at https://doi.org/10.4121/21610995.v1 (Wollschläger et al., 2022), https://doi.org/10.4121/21822051.v1 (Miranda et al., 2023) and https://doi.org/10.4121/21904632.v1 (Miranda and Garaba, 2023). Data used to derive the above-water reflectance are available from https://doi.org/10.4121/21814977.v1 (Garaba, 2023) and https://doi.org/10.4121/21814773.v1 (Garaba and Albinus, 2023). Additionally, hyperspectral fluorescence measurements of the dissolved compounds in the water were carried out. These hyperspectral measurements were conducted over a wide spectrum (200–2500 nm). Diagnostic optical features were determined using robust statistical techniques. Water clarity was inferred from Secchi disc measurements (https://doi.org/10.1594/PANGAEA.951239, Garaba and Albinus, 2022). Identification of the cyanobacterium was completed via visual analysis under a microscope. Full sequences of the 16S rRNA and rbcL genes were obtained, revealing a very strong match to N. spumigena; these data are available via GenBank: https://www.ncbi.nlm.nih.gov/nuccore/OP918142/ (Garaba and Bonthond, 2022b) and https://www.ncbi.nlm.nih.gov/nuccore/OP925098 (Garaba and Bonthond, 2022a). The chlorophyll-a and phycocyanin levels determined are available from https://doi.org/10.4121/21792665.v1 (Rohde et al., 2023). Our experiments of opportunity echo the importance of sustainable, simplified, coordinated and continuous water quality monitoring as a way to thrive with respect to the targets set in the United Nations Sustainable Development Goals (e.g. 6, 11, 12 and 14) or the European Union Framework Directives (e.g. the Water Framework Directive and Marine Strategy Framework Directive).</p

Functionally reversible impacts of disturbances on lake food webs linked to spatial and seasonal dependencies

Increasing human impact on the environment is causing drastic changes in disturbance regimes and how they prevail over time. Of increasing relevance is to further our understanding on biological responses to pulse disturbances (short duration) and how they interact with other ongoing press disturbances (constantly present). Because the temporal and spatial contexts of single experiments often limit our ability to generalize results across space and time, we conducted a modularized mesocosm experiment replicated in space (five lakes along a latitudinal gradient in Scandinavia) and time (two seasons, spring and summer) to generate general predictions on how the functioning and composition of multitrophic plankton communities (zoo-, phyto- and bacterioplankton) respond to pulse disturbances acting either in isolation or combined with press disturbances. As pulse disturbance, we used short-term changes in fish presence, and as press disturbance, we addressed the ongoing reduction in light availability caused by increased cloudiness and lake browning in many boreal and subarctic lakes. First, our results show that the top-down pulse disturbance had the strongest effects on both functioning and composition of the three trophic levels across sites and seasons, with signs for interactive impacts with the bottom-up press disturbance on phytoplankton communities. Second, community composition responses to disturbances were highly divergent between lakes and seasons: temporal accumulated community turnover of the same trophic level either increased (destabilization) or decreased (stabilization) in response to the disturbances compared to control conditions. Third, we found functional recovery from the pulse disturbances to be frequent at the end of most experiments. In a broader context, these results demonstrate that top-down, pulse disturbances, either alone or with additional constant stress upon primary producers caused by bottom-up disturbances, can induce profound but often functionally reversible changes across multiple trophic levels, which are strongly linked to spatial and temporal context dependencies. Furthermore, the identified dichotomy of disturbance effects on the turnover in community composition demonstrates the potential of disturbances to either stabilize or destabilize biodiversity patterns over time across a wide range of environmental conditions

Water colour, phosphorus and alkalinity are the major determinants of the dominant phytoplankton species in European lakes

Analysis of phytoplankton data from about 1,500 lakes in 20 European countries has revealed that two-thirds of the species that dominate lakes during the summer are dominant right across Europe. Using Canonical Correspondence Analyses, we have examined how both habitat conditions within lakes and environmental factors over broad geographical scales explained the distribution of the 151 most common summer dominant species. The distributions of these species were best explained by water colour and latitude, although alkalinity and total phosphorus also appeared to be important explanatory factors. Contrary to our original hypothesis, summer water temperatures had a negligible impact on the distribution of dominants, although, due to the restricted summer season we examined, only a limited temperature gradient was present in the dataset. Cryptophytes occurred more frequently among dominants in Northern Europe whereas cyanobacteria and dinophytes dominated more in Central and Southern Europe. Our analyses suggest that besides nutrient concentrations, other water chemistry variables, such as alkalinity and the content of humic substances, have at least as important a role in determining the distribution of the dominant phytoplankton species in European lakes

Effects of nitrogen concentration on the taxonomic and functional structure of phytoplankton communities in the Western Baltic Sea and implications for the European water framework directive

The European water framework directive and the marine strategy framework directive have the objective to establish at least ‘good’ ecological status in all European waters by 2015. Therefore a classification system has to be established in each European country, in order to assess their water bodies. For the German coastal waters of the Baltic Sea, a classification system for phytoplankton based on the abundance of Cyanophyceae and Chlorophyceae was already presented. This system has been successfully adapted in regions with low salinity levels (15 PSU). All present taxonomic groups, most common species and functional groups were tested. It could be shown that all tested correlations to nitrogen concentration as eutrophication descriptor are relatively week. Nevertheless, the biovolume of Cryptophyceae was found to be the most reliable phytoplankton composition indicator, which could serve as future assessment criterion. Furthermore, as proposed by some experts, the use of maximal dissolved winter nitrogen concentration as eutrophication descriptor might be an advantage over using the total nitrogen concentrations in summer

Mixotrophic haptophytes are key bacterial grazers in oligotrophic coastal waters

13 pages, 6 figures, 1 tableGrazing rate estimates indicate that approximately half of the bacterivory in oligotrophic oceans is due to mixotrophic flagellates (MFs). However, most estimations have considered algae as a single group. Here we aimed at opening the black-box of the phytoflagellates (PFs) <20 μm. Haptophytes, chlorophytes, cryptophytes and pigmented dinoflagellates were identified using fluorescent in situ hybridization or by standard 4′,6-diamidino-2- phenylindole staining. Their fluctuations in abundance, cell size, biomass and bacterivory rates were measured through an annual cycle in an oligotrophic coastal system. On average, we were able to assign to these groups: 37% of the total pico-PFs and 65% of the nano-PFs composition. Chlorophytes were mostly picoplanktonic and they never ingested fluorescently labeled bacteria. About 50% of the PF <20 μm biomass was represented by mixotrophic algae. Pigmented dinoflagellates were the least abundant group with little impact on bacterioplankton. Cryptophytes were quantitatively important during the coldest periods and explained about 4% of total bacterivory. Haptophytes were the most important mixotrophic group: (i) they were mostly represented by cells 3-5 μm in size present year-round; (ii) cell-specific grazing rates were comparable to those of other bacterivorous non-photosynthetic organisms, regardless of the in situ nutrient availability conditions; (iii) these organisms could acquire a significant portion of their carbon by ingesting bacteria; and (iv) haptophytes explained on average 40% of the bacterivory exerted by MFs and were responsible for 9-27% of total bacterivory at this site. Our results, when considered alongside the widespread distribution of haptophytes in the ocean, indicate that they have a key role as bacterivores in marine ecosystems. © 2014 International Society for Microbial Ecology All rights reservedThis study was supported by EU project BASICS (EVK3-CT-2002-00078) and a post-doctoral fellowship of the former MECD (SB2001-0166). It was also partially funded by MEC projects ESTRAMAR (CTM2004-12631/MAR), GENmMAR (CTM2004-02586/MAR) and FLAME (CGL2010-16304, MICINN), and by the Spanish-Argentina project PROBA (2007AR0018, CSIC). FN was supported by the Marie-Curie fellowship ESUMAST (MEIF-CT-2005-025000)Peer Reviewe

Freshwater phytoplankton diversity: models, drivers and implications for ecosystem properties

Our understanding on phytoplankton diversity has largely been progressing since the publication of Hutchinson on the paradox of the plankton. In this paper, we summarise some major steps in phytoplankton ecology in the context of mechanisms underlying phytoplankton diversity. Here, we provide a framework for phytoplankton community assembly and an overview of measures on taxonomic and functional diversity. We show how ecological theories on species competition together with modelling approaches and laboratory experiments helped understand species coexistence and maintenance of diversity in phytoplankton. The non-equilibrium nature of phytoplankton and the role of disturbances in shaping diversity are also discussed. Furthermore, we discuss the role of water body size, productivity of habitats and temperature on phytoplankton species richness, and how diversity may affect the functioning of lake ecosystems. At last, we give an insight into molecular tools that have emerged in the last decades and argue how it has broadened our perspective on microbial diversity. Besides historical backgrounds, some critical comments have also been mad

Consumer versus resource control of species diversity and ecosystem functioning

A key question in ecology is which factors control species diversity in a community1, 2, 3. Two largely separate groups of ecologists have emphasized the importance of productivity or resource supply, and consumers or physical disturbance, respectively. These variables show unimodal relationships with diversity when manipulated in isolation4, 5, 6, 7, 8. Recent multivariate models9, 10, however, predict that these factors interact, such that the disturbance–diversity relationship depends on productivity, and vice versa. We tested these models in marine food webs, using field manipulations of nutrient resources and consumer pressure on rocky shores of contrasting productivity. Here we show that the effects of consumers and nutrients on diversity consistently depend on each other, and that the direction of their effects and peak diversity shift between sites of low and high productivity. Factorial meta-analysis of published experiments confirms these results across widely varying aquatic communities. Furthermore, our experiments demonstrate that these patterns extend to important ecosystem functions such as carbon storage and nitrogen retention. This suggests that human impacts on nutrient supply11 and food-web structure12, 13 have strong and interdependent effects on species diversity and ecosystem functioning, and must therefore be managed together