Collodictyon—An Ancient Lineage in the Tree of Eukaryotes

The current consensus for the eukaryote tree of life consists of several large assemblages (supergroups) that are hypothesized to describe the existing diversity. Phylogenomic analyses have shed light on the evolutionary relationships within and between supergroups as well as placed newly sequenced enigmatic species close to known lineages. Yet, a few eukaryote species remain of unknown origin and could represent key evolutionary forms for inferring ancient genomic and cellular characteristics of eukaryotes. Here, we investigate the evolutionary origin of the poorly studied protist Collodictyon (subphylum Diphyllatia) by sequencing a cDNA library as well as the 18S and 28S ribosomal DNA (rDNA) genes. Phylogenomic trees inferred from 124 genes placed Collodictyon close to the bifurcation of the “unikont” and “bikont” groups, either alone or as sister to the potentially contentious excavate Malawimonas. Phylogenies based on rDNA genes confirmed that Collodictyon is closely related to another genus, Diphylleia, and revealed a very low diversity in environmental DNA samples. The early and distinct origin of Collodictyon suggests that it constitutes a new lineage in the global eukaryote phylogeny. Collodictyon shares cellular characteristics with Excavata and Amoebozoa, such as ventral feeding groove supported by microtubular structures and the ability to form thin and broad pseudopods. These may therefore be ancient morphological features among eukaryotes. Overall, this shows that Collodictyon is a key lineage to understand early eukaryote evolution

Comparative Study of Contact Repulsion in Control and Mutant Macrophages Using a Novel Interaction Detection

In this paper, a novel method for interaction detection is presented to compare the contact dynamics of macrophages in the Drosophila embryo. The study is carried out by a framework called macrosight, which analyses the movement and interaction of migrating macrophages. The framework incorporates a segmentation and tracking algorithm into analysing the motion characteristics of cells after contact. In this particular study, the interactions between cells is characterised in the case of control embryos and Shot mutants, a candidate protein that is hypothesised to regulate contact dynamics between migrating cells. Statistical significance between control and mutant cells was found when comparing the direction of motion after contact in specific conditions. Such discoveries provide insights for future developments in combining biological experiments with computational analysis

Population analysis of open clusters: radii and mass segregation

Aims: Based on our well-determined sample of open clusters in the all-sky catalogue ASCC-2.5 we derive new linear sizes of some 600 clusters, and investigate the effect of mass segregation of stars in open clusters. Methods: Using statistical methods, we study the distribution of linear sizes as a function of spatial position and cluster age. We also examine statistically the distribution of stars of different masses within clusters as a function of the cluster age. Results: No significant dependence of the cluster size on location in the Galaxy is detected for younger clusters (< 200 Myr), whereas older clusters inside the solar orbit turned out to be, on average, smaller than outside. Also, small old clusters are preferentially found close to the Galactic plane, whereas larger ones more frequently live farther away from the plane and at larger Galactocentric distances. For clusters with (V - M_V) < 10.5, a clear dependence of the apparent radius on age has been detected: the cluster radii decrease by a factor of about 2 from an age of 10 Myr to an age of 1 Gyr. A detailed analysis shows that this observed effect can be explained by mass segregation and does not necessarily reflect a real decrease of cluster radii. We found evidence for the latter for the majority of clusters older than 30 Myr. Among the youngest clusters (between 5 and 30 Myr), there are some clusters with a significant grade of mass segregation, whereas some others show no segregation at all. At a cluster age between 50 and 100 Myrs, the distribution of stars of different masses becomes more regular over cluster area. In older clusters the evolution of the massive stars is the most prominent effect we observe.Comment: 14 pages, 12 figures, accepted for publication in Astronomy & Astrophysic

Velocity Dispersion of Dissolving OB Associations Affected by External Pressure of Formation Environment

This paper presents a possible way to understand dissolution of OB associations (or groups). Assuming rapid escape of parental cloud gas from associations, we show that the shadow of the formation environment for associations can be partially imprinted on the velocity dispersion at their dissolution. This conclusion is not surprising as long as associations are formed in a multiphase interstellar medium, because the external pressure should suppress expansion caused by the internal motion of the parental clouds. Our model predicts a few km s$^{-1}$ as the internal velocity dispersion. Observationally, the internal velocity dispersion is $\sim 1$ km s$^{-1}$ which is smaller than our prediction. This suggests that the dissipation of internal energy happens before the formation of OB associations.Comment: 6 pages. AJ accepte

Envelope Ejection: an Alternative Process for some Early Case B Binaries

We discuss the evolution of binaries with moderately high masses (about 10 - 30 solar masses), and with periods of about 3 - 300d, corresponding mostly to early Case B. These are usually thought to evolve either by reasonably conservative Roche-lobe overflow, if the initial mass ratio is fairly mild, or else by highly non-conservative common-envelope evolution, with spiral-in to short periods (hours, typically), if the initial mass ratio is rather extreme. We discuss here a handful of binaries from part of this period range (about 50 - 250d), which appear to have followed a different path: we argue that they must have lost a large proportion of initial mass (about 70 - 80%), but without shortening their periods at all. We suggest that their behaviour may be due to the fact that stars of such masses, when evolved also to rather large radii, are not far from the Humphreys-Davidson limit where single stars lose their envelopes spontaneously in P Cygni winds, and so have envelopes which are only lightly bound to the core. These envelopes therefore may be relatively easily dissipated by the perturbing effect of a companion. In addition, some or all of the stars considered here may have been close to the Cepheid instability strip when they filled their Roche lobes. One or other, or both, of high luminosity and Cepheid instability, in combination with an appropriately close binary companion, may be implicated

The MACHO Project LMC Variable Star Inventory. VI. The Second-overtone Mode of Cepheid Pulsation From First/Second Overtone (FO/SO) Beat Cepheids

MACHO Project photometry of 45 LMC FO/SO beat Cepheids which pulsate in the first and second overtone (FO and SOo, respectively) has been analysed to determine the lightcurve characteristics for the SO mode of Cepheid pulsation. We predict that singly-periodic SO Cepheids will have nearly sinusoidal lightcurves; that we will only be able to discern SO Cepheids from fundamental (F) and (FO) Cepheids for P <= 1.4 days; and that the SO distribution will overlap the short-period edge of the LMC FO Cepheid period-luminosity relation (when both are plotted as a function of photometric period). We also report the discovery of one SO Cepheid candidate, MACHO*05:03:39.6$-$70:04:32, with a photometric period of 0.775961 +/- 0.000019 days and an instrumental amplitude of 0.047 +/- 0.009 mag in V.Comment: 23 pages, 7 Encapsulated PostScript figures. Accepted for publication in the Astrophysical Journa

Functional significance may underlie the taxonomic utility of single amino acid substitutions in conserved proteins

We hypothesized that some amino acid substitutions in conserved proteins that are strongly fixed by critical functional roles would show lineage-specific distributions. As an example of an archetypal conserved eukaryotic protein we considered the active site of ß-tubulin. Our analysis identified one amino acid substitution—ß-tubulin F224—which was highly lineage specific. Investigation of ß-tubulin for other phylogenetically restricted amino acids identified several with apparent specificity for well-defined phylogenetic groups. Intriguingly, none showed specificity for “supergroups” other than the unikonts. To understand why, we analysed the ß-tubulin Neighbor-Net and demonstrated a fundamental division between core ß-tubulins (plant-like) and divergent ß-tubulins (animal and fungal). F224 was almost completely restricted to the core ß-tubulins, while divergent ß-tubulins possessed Y224. Thus, our specific example offers insight into the restrictions associated with the co-evolution of ß-tubulin during the radiation of eukaryotes, underlining a fundamental dichotomy between F-type, core ß-tubulins and Y-type, divergent ß-tubulins. More broadly our study provides proof of principle for the taxonomic utility of critical amino acids in the active sites of conserved proteins

Discovery of a peculiar Cepheid-like star towards the northern edge of the Small Magellanic Cloud

For seven years, the EROS-2 project obtained a mass of photometric data on variable stars. We present a peculiar Cepheid-like star, in the direction of the Small Magellanic Cloud, which demonstrates unusual photometric behaviour over a short time interval. We report on data of the photometry acquired by the MARLY telescope and spectroscopy from the EFOSC instrument for this star, called EROS2 J005135-714459(sm0060n13842), which resembles the unusual Cepheid HR 7308. The light curve of our target is analysed using the Analysis of Variance method to determine a pulsational period of 5.5675 days. A fit of time-dependent Fourier coefficients is performed and a search for proper motion is conducted. The light curve exhibits a previously unobserved and spectacular change in both mean magnitude and amplitude, which has no clear theoretical explanation. Our analysis of the spectrum implies a radial velocity of 104 km s$^{-1}$ and a metallicity of -0.4$\pm$0.2 dex. In the direction of right ascension, we measure a proper motion of 17.4$\pm$6.0 mas yr$^{-1}$ using EROS astrometry, which is compatible with data from the NOMAD catalogue. The nature of EROS2 J005135-714459(sm0060n13842) remains unclear. For this star, we may have detected a non-zero proper motion for this star, which would imply that it is a foreground object. Its radial velocity, pulsational characteristics, and photometric data, however, suggest that it is instead a Cepheid-like object located in the SMC. In such a case, it would present a challenge to conventional Cepheid models.Comment: Correction of typos in the abstrac