A calibrated radiocarbon database of late Quaternary volcanic eruptions

International audienceResearchers at the Center for Climatic Research (CCR) at the University of Wisconsin-Madison have revised and calibrated a global volcanic database compiled from more than 2000 radiocarbon-dated eruptions from the late Pleistocene and Holocene. The updated database is available online as an appendix to this correspondence (http://www.electronic-earth-discuss.net/1/123/2006/eed-1-123-2006-supplement.zip). We briefly describe the database, suggest some potential applications, and invite other researchers in the geologic and atmospheric sciences to both use and help refine the archive by incorporating additional data as it becomes available

Automated quantitative analysis of single and double label autoradiographs

A method for the analysis of silver grain content in both single and double label autoradiographs is presented. The total grain area is calculated by counting the number of pixels at which the recorded light intensity in transmission dark field illumination exceeds a selected threshold. The calibration tests included autoradiographs with low (3H- thymidin) and high (3H-desoxyuridin) silver grain density. The results are proportional to the customary visual grain count. For the range of visibly countable grain densities in single labeled specimens, the correlation coefficient between the computed values and the visual grain counts is better than 0.96. In the first emulsion of the two emulsion layer autoradiographs of double labeled specimens (3H-14C- thymidin) the correlation coefficient is 0.919 and 0.906. The method provides a statistical correction for the background grains not due to the isotope. The possibility to record 14C tracks by shifting the focus through the second emulsion of the double labeled specimens is also demonstrated. The reported technique is essentially independent of size, shape and density of the grains

Stability of solitons in PT-symmetric couplers

Families of analytical solutions are found for symmetric and antisymmetric solitons in the dual-core system with the Kerr nonlinearity and PT-balanced gain and loss. The crucial issue is stability of the solitons. A stability region is obtained in an analytical form, and verified by simulations, for the PT-symmetric solitons. For the antisymmetric ones, the stability border is found in a numerical form. Moving solitons of both types collide elastically. The two soliton species merge into one in the "supersymmetric" case, with equal coefficients of the gain, loss and inter-core coupling. These solitons feature a subexponential instability, which may be suppressed by periodic switching ("management").Comment: Optics Letters 2011 (in press

Flower, Fruit, and Petiole Color of American Beautyberry (Callicarpa americana L.) Are Controlled by a Single Gene with Three Alleles

American beautyberry (Callicarpa americana) is a deciduous shrub native to the southeast U. S. and is grown primarily for its metallic-purple fruit that develop in the fall. There are also pink- and white-fruiting and variegated forms but these traits are rare in nature and there is no information available regarding their inheritance. Also, there is confusion regarding self-compatibility and the presence of apomixis in Callicarpa L. Crosses were performed to investigate the genetics of fruit color, self-compatibility, and apomixis in american beautyberry. Test crosses between C. americana (CA) and C. americana ‘Lactea’ (CAL) suggested that white fruit is recessive to purple. White fruit appears to be controlled by a single recessive gene for which we propose the name white fruit and the gene symbol wft. Although there were only a limited number of progeny grown, crosses between CA and ‘Welch’s Pink’ suggest that purple is dominant to pink. Test crosses between CAL and ‘Welch’s Pink’ are needed to draw conclusions; however, we propose that purple, pink, and white fruit are controlled by an allelic series for which we suggest the gene symbols Wft > wft [superscript p] > wft. Segregation ratios suggested that all progeny in the study developed through sexual hybridization. All genotypes used in the current study were self-compatible.This is an author's peer-reviewed final manuscript, as accepted by the publisher. The published article is copyrighted by the American Society for Horticultural Science and can be found at: http://hortsci.ashspublications.org/.Keywords: Apomixis, Pleiotropy, Mendelian inheritance, Self-compatibl

SMAD6 transduces endothelial cell flow responses required for blood vessel homeostasis

Fluid shear stress provided by blood flow instigates a transition from active blood vessel network expansion during development, to vascular homeostasis and quiescence that is important for mature blood vessel function. Here we show that SMAD6 is required for endothelial cell flow-mediated responses leading to maintenance of vascular homeostasis. Concomitant manipulation of the mechanosensor Notch1 pathway and SMAD6 expression levels revealed that SMAD6 functions downstream of ligand-induced Notch signaling and transcription regulation. Mechanistically, full-length SMAD6 protein was needed to rescue Notch loss-induced flow misalignment. Endothelial cells depleted for SMAD6 had defective barrier function accompanied by upregulation of proliferation-associated genes and down regulation of junction-associated genes. The vascular protocadherin PCDH12 was upregulated by SMAD6 and required for proper flow-mediated endothelial cell alignment, placing it downstream of SMAD6. Thus, SMAD6 is a required transducer of flow-mediated signaling inputs downstream of Notch1 and upstream of PCDH12, as vessels transition from an angiogenic phenotype to maintenance of a homeostatic phenotype

Redirection of SKN-1 abates the negative metabolic outcomes of a perceived pathogen infection

Early host responses toward pathogens are essential for defense against infection. In Caenorhabditis elegans, the transcription factor, SKN-1, regulates cellular defenses during xenobiotic intoxication and bacterial infection. However, constitutive activation of SKN-1 results in pleiotropic outcomes, including a redistribution of somatic lipids to the germline, which impairs health and shortens lifespan. Here, we show that exposing C. elegans to Pseudomonas aeruginosa similarly drives the rapid depletion of somatic, but not germline, lipid stores. Modulating the epigenetic landscape refines SKN-1 activity away from innate immunity targets, which alleviates negative metabolic outcomes. Similarly, exposure to oxidative stress redirects SKN-1 activity away from pathogen response genes while restoring somatic lipid distribution. In addition, activating p38/MAPK signaling in the absence of pathogens, is sufficient to drive SKN-1-dependent loss of somatic fat. These data define a SKN-1- and p38-dependent axis for coordinating pathogen responses, lipid homeostasis, and survival and identify transcriptional redirection, rather than inactivation, as a mechanism for counteracting the pleiotropic consequences of aberrant transcriptional activity

Energy Flow in the Hadronic Final State of Diffractive and Non-Diffractive Deep-Inelastic Scattering at HERA

An investigation of the hadronic final state in diffractive and non--diffractive deep--inelastic electron--proton scattering at HERA is presented, where diffractive data are selected experimentally by demanding a large gap in pseudo --rapidity around the proton remnant direction. The transverse energy flow in the hadronic final state is evaluated using a set of estimators which quantify topological properties. Using available Monte Carlo QCD calculations, it is demonstrated that the final state in diffractive DIS exhibits the features expected if the interaction is interpreted as the scattering of an electron off a current quark with associated effects of perturbative QCD. A model in which deep--inelastic diffraction is taken to be the exchange of a pomeron with partonic structure is found to reproduce the measurements well. Models for deep--inelastic $ep$ scattering, in which a sizeable diffractive contribution is present because of non--perturbative effects in the production of the hadronic final state, reproduce the general tendencies of the data but in all give a worse description.Comment: 22 pages, latex, 6 Figures appended as uuencoded fil

Intestinal Colonization Traits of Pandemic Multidrug-Resistant Escherichia coli ST131

Background. Epidemiological studies point to the gut as a key reservoir of multidrug resistant Escherichia coli multilocus sequence type 131 (ST131), a globally dominant pathogenic clone causing urinary tract and bloodstream infections. Here we report a detailed investigation of its intestinal lifestyle. Methods. Clinical ST131 isolates and type 1 fimbriae null mutants were assessed for colonization of human intestinal epithelia and in mouse intestinal colonization models. Mouse gut tissue underwent histologic analysis for pathology and ST131 localization. Key findings were corroborated in mucus-producing human cell lines and intestinal biopsy specimens. Results. ST131 strains adhered to and invaded human intestinal epithelial cells more than probiotic and commensal strains. The reference ST131 strain EC958 established persistent intestinal colonization in mice, and expression of type 1 fimbriae mediated higher colonization levels. Bacterial loads were highest in the distal parts of the mouse intestine and did not cause any obvious pathology. Further analysis revealed that EC958 could bind to both mucus and underlying human intestinal epithelia. Conclusions. ST131 strains can efficiently colonize the mammalian gut and persist long term. Type 1 fimbriae enhance ST131 intestinal colonization, suggesting that mannosides, currently developed as therapeutics for bladder infections and Crohn’s disease, could also be used to limit intestinal ST131 reservoirs