Size-dependence of volatile and semi-volatile organic carbon content in phytoplankton cells

The content of volatile and semivolatile organic compounds (VOC and SOC), measured as exchangeable dissolved organic carbon (EDOC), was quantified in 9 phytoplanktonic species that spanned 4 orders of magnitude in cell volume, by disrupting the cells and quantifying the gaseous organic carbon released. EDOC content varied 4 orders of magnitude, from 0.0015 to 14.12 pg C cell−1 in the species studied and increased linearly with increasing phytoplankton cell volume following the equation EDOC (pg C cell−1) = −2.35 × cellular volume (CV, μm3 cell−1) 0.90 (± 0.3), with a slope (0.90) not different from 1 indicating a constant increase in volatile carbon as the cell size of phytoplankton increased. The percentage of EDOC relative to total cellular carbon was small but varied 20 fold from 0.28 to 5.17%, and no obvious taxonomic pattern in the content of EDOC was appreciable for the species tested. The cell release rate of EDOC is small compared to the amount of carbon in the cell and difficult to capture. Nonetheless, the results point to a potentialf flux of volatile and semivolatile phytoplankton-derived organic carbon to the atmosphere that has been largely underestimated and deserves further attention in the future.This is a contribution to the “Malaspina 2010” COSOLIDER project funded by the Spanish Ministry of Science and Innovation (CSD2008-00077).Peer reviewedPeer Reviewe

CO2-driven compromises to marine life along the Chilean coast

CO2-driven compromises to marine life were examined along the Chilean sector of the Humboldt Current System, a particularly vulnerable hypoxic and upwelling area, applying the Respiration index (RI = log10 pO2/pCO2) and the pH-dependent aragonite saturation (Ω) to delineate the water masses where aerobic and calcifying organisms are stressed. There was a remarkable negative relationship between oxygen concentration and pH or pCO2 in the studied area, with the subsurface hypoxic Equatorial Subsurface Waters extending from 100 m to about 300 m depth and supporting elevated pCO2 values. The RI reached a minimum at about 200 m depth and decreased towards the Equator. Increased pCO2 in the hypoxic water layer reduced the RI values by as much as 0.59 RI units, with the upper water layer that presents conditions suitable for aerobic life (RI>0.7) declining by half between 42° S and 28° S. The intermediate waters hardly reached those stations closer to the equator so that the increased pCO2 lowered pH and the saturation of aragonite. A significant fraction of the water column along the Chilean sector of the Humboldt Current System suffers from CO2-driven compromises to biota, including waters corrosive to calcifying organisms, stress to aerobic organisms or both. The habitat free of CO2-driven stresses was restricted to the upper mixed layer and to small water parcels at about 1000 m depth. pCO2 acts as a hinge connecting respiratory and calcification challenges expected to increase in the future, resulting in a spread of the challenges to aerobic organisms. © Author(s) 2008.This is a contribution to the Humboldt-2009 project, funded by the Spanish Ministry of Science and Innovation (ref. CTM2009-02497-E/MA) and was also supported by funding from the LINCGlobal (PUC-CSIC).Peer Reviewe

Ocean-atmosphere exchange of organic carbon and CO2 surrounding the Antarctic Peninsula

Exchangeable organic carbon (OC) dynamics and CO2 fluxes in the Antarctic Peninsula during austral summer were highly variable, but the region appeared to be a net sink for OC and nearly in balance for CO2. Surface exchangeable dissolved organic carbon (EDOC) measurements had a 43±3 (standard error, hereafter SE) μmol CL-1 overall mean and represented around 66% of surface non-purgeable dissolved organic carbon (DOC) in Antarctic waters, while the mean concentration of the gaseous fraction of organic carbon (GOCH′-1) was 46±3 SE μmol C L -1. There was a tendency towards low fugacity of dissolved CO 2 (fCO2-w) in waters with high chlorophyll a (Chl a) content and high fCO2-w in areas with high krill densities. However, such relationships were not found for EDOC. The depth profiles of EDOC were also quite variable and occasionally followed Chl a profiles. The diel cycles of EDOC showed two distinct peaks, in the middle of the day and the middle of the short austral dark period, concurrent with solar radiation maxima and krill night migration patterns. However, no evident diel pattern for GOC H′-1 or CO2 was observed. The pool of exchangeable OC is an important and active compartment of the carbon budget surrounding the Antarctic Peninsula and adds to previous studies highlighting its importance in the redistribution of carbon in marine environments. © Author(s) 2014.This is a contribution of both Aportes Atmosféricos de Carbono Orgánico y Contaminanates al océano Polar (ATOS) and the Spanish component of the Synoptic Antarctic Shelf-Slope Interactions study (ESASSI), funded by the Spanish Ministry of Science under the scope of the International Polar Year (IPY). Maria Ll. Calleja was funded by the Spanish Research Council (CSIC, grant JAEDOC030) and cofounded by the Fondo Social Europeo (FSO)Peer Reviewe

The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics.

ABSTRACT: A global genome database of all of Earth’s species diversity could be a treasure trove of scientific discoveries. However, regardless of the major advances in genome sequencing technologies, only a tiny fraction of species have genomic information available. To contribute to a more complete planetary genomic database, scientists and institutions across the world have united under the Earth BioGenome Project (EBP), which plans to sequence and assemble high-quality reference genomes for all ∼1.5 million recognized eukaryotic species through a stepwise phased approach. As the initiative transitions into Phase II, where 150,000 species are to be sequenced in just four years, worldwide participation in the project will be fundamental to success. As the European node of the EBP, the European Reference Genome Atlas (ERGA) seeks to implement a new decentralised, accessible, equitable and inclusive model for producing high-quality reference genomes, which will inform EBP as it scales. To embark on this mission, ERGA launched a Pilot Project to establish a network across Europe to develop and test the first infrastructure of its kind for the coordinated and distributed reference genome production on 98 European eukaryotic species from sample providers across 33 European countries. Here we outline the process and challenges faced during the development of a pilot infrastructure for the production of reference genome resources, and explore the effectiveness of this approach in terms of high-quality reference genome production, considering also equity and inclusion. The outcomes and lessons learned during this pilot provide a solid foundation for ERGA while offering key learnings to other transnational and national genomic resource projects.info:eu-repo/semantics/publishedVersio

Design and baseline characteristics of the finerenone in reducing cardiovascular mortality and morbidity in diabetic kidney disease trial

Background: Among people with diabetes, those with kidney disease have exceptionally high rates of cardiovascular (CV) morbidity and mortality and progression of their underlying kidney disease. Finerenone is a novel, nonsteroidal, selective mineralocorticoid receptor antagonist that has shown to reduce albuminuria in type 2 diabetes (T2D) patients with chronic kidney disease (CKD) while revealing only a low risk of hyperkalemia. However, the effect of finerenone on CV and renal outcomes has not yet been investigated in long-term trials. Patients and Methods: The Finerenone in Reducing CV Mortality and Morbidity in Diabetic Kidney Disease (FIGARO-DKD) trial aims to assess the efficacy and safety of finerenone compared to placebo at reducing clinically important CV and renal outcomes in T2D patients with CKD. FIGARO-DKD is a randomized, double-blind, placebo-controlled, parallel-group, event-driven trial running in 47 countries with an expected duration of approximately 6 years. FIGARO-DKD randomized 7,437 patients with an estimated glomerular filtration rate >= 25 mL/min/1.73 m(2) and albuminuria (urinary albumin-to-creatinine ratio >= 30 to <= 5,000 mg/g). The study has at least 90% power to detect a 20% reduction in the risk of the primary outcome (overall two-sided significance level alpha = 0.05), the composite of time to first occurrence of CV death, nonfatal myocardial infarction, nonfatal stroke, or hospitalization for heart failure. Conclusions: FIGARO-DKD will determine whether an optimally treated cohort of T2D patients with CKD at high risk of CV and renal events will experience cardiorenal benefits with the addition of finerenone to their treatment regimen. Trial Registration: EudraCT number: 2015-000950-39; ClinicalTrials.gov identifier: NCT02545049

Omecamtiv mecarbil in chronic heart failure with reduced ejection fraction, GALACTIC‐HF: baseline characteristics and comparison with contemporary clinical trials

Aims: The safety and efficacy of the novel selective cardiac myosin activator, omecamtiv mecarbil, in patients with heart failure with reduced ejection fraction (HFrEF) is tested in the Global Approach to Lowering Adverse Cardiac outcomes Through Improving Contractility in Heart Failure (GALACTIC‐HF) trial. Here we describe the baseline characteristics of participants in GALACTIC‐HF and how these compare with other contemporary trials. Methods and Results: Adults with established HFrEF, New York Heart Association functional class (NYHA) ≥ II, EF ≤35%, elevated natriuretic peptides and either current hospitalization for HF or history of hospitalization/ emergency department visit for HF within a year were randomized to either placebo or omecamtiv mecarbil (pharmacokinetic‐guided dosing: 25, 37.5 or 50 mg bid). 8256 patients [male (79%), non‐white (22%), mean age 65 years] were enrolled with a mean EF 27%, ischemic etiology in 54%, NYHA II 53% and III/IV 47%, and median NT‐proBNP 1971 pg/mL. HF therapies at baseline were among the most effectively employed in contemporary HF trials. GALACTIC‐HF randomized patients representative of recent HF registries and trials with substantial numbers of patients also having characteristics understudied in previous trials including more from North America (n = 1386), enrolled as inpatients (n = 2084), systolic blood pressure &lt; 100 mmHg (n = 1127), estimated glomerular filtration rate &lt; 30 mL/min/1.73 m2 (n = 528), and treated with sacubitril‐valsartan at baseline (n = 1594). Conclusions: GALACTIC‐HF enrolled a well‐treated, high‐risk population from both inpatient and outpatient settings, which will provide a definitive evaluation of the efficacy and safety of this novel therapy, as well as informing its potential future implementation

Volatile organic carbon dynamics and airsea flux in the coastal ocean

[spa] El estudio de carbón orgánico en fase gaseosa en el océano costero ha identificado el SubÁrtic y el océano Sur con zonas activas en el ciclado de EDOC, con flujos dominantes de la atmósfera al agua, Además, varios organismos y compartimentos han sido identificados como productores y consumidoresde EDOC. Macroalgas, Krill, y sedimentos proporcionan EDOC al agua, mientras que el plancton es un sumidero neto. Se ha detectado variabilidad estacional e interanual de EDOC y GOC en el Mediterráneo. Ésta tesis subraya la naturaleza ubicua de EDOC, y representa el 35-30% de DOC+EDOC global en el agua. Ésta fracción es significativa y tiene implicaciones biogeoquímicas importantes en el medio marino. Además, el flujo aire-agua de OC no es despreciable y constituye la fracción mayor de carbono derivado de la atmósfera presente en los océanos, cntribuyendo a la redistribución de OC a lo largo de grandes distancias.[cat] L'estudi del carboni orgànic en fase gasosa a l'oceà costaner ha identificat el Sub-Àrtic i l'Oceà Sud com àrees de ciclat d'EDOC actives, amb fluxes dominants de l'atmosfera cap a l'oceà. A més, molts organismes i compartiments de l'ecosistema s'han identificat com a productors i consumidors d'EDOC. Macroalgues, krill i sediments proporcionen EDOC a l'aigua, mentres que el plancton és un embornal net. S'ha detectat variabilitat estacional i interanual d'EDOC y GOC al Mediterrani. Aquesta tesi subratlla la naturalesa ubicua de l'EDOC, i representa el 25-30 % del DOC+EDOC global a l'aigua. Aquesta fracció és significant i té implicacions biogeoquímiques importants en el medi marí. A més, el fluxe aire-aigua d’OC no és menyspreable i representa la fracció major del carboni derivat de l'atmosfera present als oceans, contribuint a la redistribució d'OC a través de grans àrees.[eng] The study of gaseous phase organic carbon in the coastal ocean identified the Subarctic and Southern Ocean as areas of active cycling of EDOC, with a prevalence of fluxes towards the ocean. Furthermore, several organisms and ecosystem compartments were identified as producers and consumers of EDOC. Macroalgae, Krill and sediments contribute to the EDOC pool in the water, while the water column was a net sink for EDOC. Seasonal and interannual of variability EDOC and GOC was detected in the Mediterranean This thesis highlights the ubiquitous nature of EDOC in the oceans, representing, globally, 25-30% of DOC+EDOC in the water. This fraction is not small and has important implications for the biogeochemistry of the marine realm. Furthermore, the air-water flux of OC is not negligible and represents the major fraction of atmospherically derived carbon to the oceans, contributing to the redistribution of OC across large areas

Annual benthic metabolism and organic carbon fluxes in a semi-enclosed Mediterranean bay dominated by the macroalgae Caulerpa prolifera

Coastal areas play an important role on carbon cycling. Elucidating the dynamics on the production, transport, and fate of organic carbon (OC) is relevant to gain a better understanding on the role coastal areas play in the global carbon budget. Here, we assess the metabolic status and associated OC fluxes of a semi-enclosed Mediterranean bay supporting a meadow of Caulerpa prolifera. We test whether the EDOC pool is a significant component of the OC pool and associated fluxes in this ecosystem. The Bay of Portocolom was in net metabolic balance on a yearly basis, but heterotrophic during the summer months. Community respiration (CR) was positively correlated to C. prolifera biomass, while net community production (NCP) had a negative correlation. The benthic compartment represented, on average, 72.6 ± 5.2% of CR and 86.8 ± 4.5% of gross primary production (GPP). Dissolved organic carbon (DOC) production peaked in summer and was always positive, with the incubations performed in the dark almost doubling the flux of those performed in the light. Exchangeable dissolved organic carbon (EDOC), however, oscillated between production and uptake, being completely recycled within the system and representing around 14% of the DOC flux. The pools of bottom and surface DOC were high for an oligotrophic environment, and were positively correlated to the pool of EDOC. Thus, despite being in metabolic balance, this ecosystem acted as a conduit for OC, as it is able to export OC to adjacent areas derived from allochtonous inputs during heterotrophic conditions. These inputs likely come from groundwater discharge, human activity in the watershed, delivered to the sediments through the high capacity of C. prolifera to remove particles from the water column, and from the air-water exchange of EDOC, demonstrating that these communities are a major contributor to the cycling of OC in coastal embayments.This research was funded by project MEDEICG, funded by the Spanish Ministry of Science and Innovation (CTM2009-07013) and an intramural project funded by CSIC (ref. 200430E661).Peer reviewedPeer Reviewe