Mass Corrections to Flavor-Changing Fermion-Graviton Vertices in the Standard Model

In a previous study, the flavor-changing fermion-graviton interactions have been analyzed in the framework of the standard model, where analytical results for the relevant form factors were obtained at the leading order in the external fermion masses. These interactions arise at one-loop level by the charged electroweak corrections to the fermion-graviton vertex, when the off-diagonal flavor transitions in the corresponding charged weak currents are taken into account. Due to the conservation of the energy-momentum tensor, the corresponding form factors turn out to be finite and gauge invariant when external fermions are on-shell. Here we extend this previous analysis by including the exact dependence on the external fermion masses. Complete analytical results are provided for all the relevant form factors to the flavor-changing fermion-graviton transitions.Comment: 19 pages, 9 figure

Optimizing periodicity and polymodality in noise-induced genetic oscillators

Many cellular functions are based on the rhythmic organization of biological processes into self-repeating cascades of events. Some of these periodic processes, such as the cell cycles of several species, exhibit conspicuous irregularities in the form of period skippings, which lead to polymodal distributions of cycle lengths. A recently proposed mechanism that accounts for this quantized behavior is the stabilization of a Hopf-unstable state by molecular noise. Here we investigate the effect of varying noise in a model system, namely an excitable activator-repressor genetic circuit, that displays this noise-induced stabilization effect. Our results show that an optimal noise level enhances the regularity (coherence) of the cycles, in a form of coherence resonance. Similar noise levels also optimize the multimodal nature of the cycle lengths. Together, these results illustrate how molecular noise within a minimal gene regulatory motif confers robust generation of polymodal patterns of periodicity.Comment: 9 pages, 6 figure

Novel decay dynamics revealed for virus-mediated drug activation in cytomegalovirus infection

Human cytomegalovirus (CMV) infection is a substantial cause of morbidity and mortality in immunocompromised hosts and globally is one of the most important congenital infections. The nucleoside analogue ganciclovir (GCV), which requires initial phosphorylation by the viral UL97 kinase, is the mainstay for treatment. To date, CMV decay kinetics during GCV therapy have not been extensively investigated and its clinical implications not fully appreciated. We measured CMV DNA levels in the blood of 92 solid organ transplant recipients with CMV disease over the initial 21 days of ganciclovir therapy and identified four distinct decay patterns, including a new pattern exhibiting a transient viral rebound (Hump) following initial decline. Since current viral dynamics models were unable to account for this Hump profile, we developed a novel multi-level model, which includes the intracellular role of UL97 in the continued activation of ganciclovir, that successfully described all the decline patterns observed. Fitting the data allowed us to estimate ganciclovir effectiveness in vivo (mean 92%), infected cell half-life (mean 0.7 days), and other viral dynamics parameters that determine which of the four kinetic patterns will ensue. An important clinical implication of our results is that the virological efficacy of GCV operates over a broad dose range. The model also raises the possibility that GCV can drive replication to a new lower steady state but ultimately cannot fully eradicate it. This model is likely to be generalizable to other anti-CMV nucleoside analogs that require activation by viral enzymes such as UL97 or its homologues

You Want to be an IRB Community Member... Now What? A resource manual in two parts

https://oprs.usc.edu/files/2013/01/community_member_web.pd

A Quantitative Theory of Laser-Generated Ultrasound

The basic work of R. M. White [1] on the generation of elastic waves by transient surface heating was followed by numerous theoretical and experimental investigations, to understand the nature of the strange elastic waveforms obtained and to make this technique available for practical applications [2]. The theoretical considerations of L. R. F. Rose [3] about a point of dilation just below the surface of an elastic halfspace leads to a reasonable qualitative agreement with experiments, but do not relate all relevant material and laser beam parameters to the displacement field. This contributions outlines the application of an extended theory to a complete system of nondestructive evaluation, taking into account the structure of different laser modes, the optical, thermal and elastic material properties as well as the finite area of a capacitance transducer

Investigation of ground-based microwave radiometer calibration techniques at 530 hPa

Ground-based microwave radiometers (MWR) are becoming more and more common for remotely sensing the atmospheric temperature and humidity profile as well as path-integrated cloud liquid water content. The calibration accuracy of the state-of-the-art MWR HATPRO-G2 (Humidity And Temperature Profiler – Generation 2) was investigated during the second phase of the Radiative Heating in Underexplored Bands Campaign (RHUBC-II) in northern Chile (5320 m above mean sea level, 530 hPa) conducted by the Atmospheric Radiation Measurement (ARM) program conducted between August and October 2009. This study assesses the quality of the two frequently used liquid nitrogen and tipping curve calibrations by performing a detailed error propagation study, which exploits the unique atmospheric conditions of RHUBC-II. Both methods are known to have open issues concerning systematic offsets and calibration repeatability. For the tipping curve calibration an uncertainty of ±0.1 to ±0.2 K (K-band) and ±0.6 to ±0.7 K (V-band) is found. The uncertainty in the tipping curve calibration is mainly due to atmospheric inhomogeneities and the assumed air mass correction for the Earth curvature. For the liquid nitrogen calibration the estimated uncertainty of ±0.3 to ±1.6 K is dominated by the uncertainty of the reflectivity of the liquid nitrogen target. A direct comparison between the two calibration techniques shows that for six of the nine channels that can be calibrated with both methods, they agree within the assessed uncertainties. For the other three channels the unexplained discrepancy is below 0.5 K. Systematic offsets, which may cause the disagreement of both methods within their estimated uncertainties, are discussed

Calibration and measurement uncertainties of a continuous-flow cloud condensation nuclei counter (DMT-CCNC): CCN activation of ammonium sulfate and sodium chloride aerosol particles in theory and experiment

International audienceExperimental and theoretical uncertainties in the measurement of cloud condensation nuclei (CCN) with a continuous-flow thermal-gradient CCN counter from Droplet Measurement Technologies (DMT-CCNC) have been assessed by model calculations and calibration experiments with ammonium sulfate and sodium chloride aerosol particles in the diameter range of 20?220 nm. Experiments have been performed in the laboratory and during field measurement campaigns, extending over a period of more than one year and covering a wide range of operating conditions (650?1020 hPa ambient pressure, 0.5?1.0 L min?1 aerosol flow rate, 20?30°C inlet temperature, 4?34 K m?1 temperature gradient). For each set of conditions, the effective water vapor supersaturation (Seff) in the CCNC was determined from the measured CCN activation spectra and Köhler model calculations. High measurement precision was achieved under stable laboratory conditions, where relative variations of Seff in the CCNC were generally less than ±2%. During field measurements, however, the relative variability increased up to ±5?7%, which can be mostly attributed to variations of the CCNC column top temperature with ambient temperature. To assess the accuracy of the Köhler models used to calculate Seff, we have performed a comprehensive comparison and uncertainty analysis of the various Köhler models and thermodynamic parameterizations commonly used in CCN studies. For the relevant supersaturation range (0.05?2%), the relative deviations between different modeling approaches were as high as 25% for (NH4)2SO4 and 16% for NaCl. The deviations were mostly caused by the different parameterizations for the activity of water in aqueous solutions of (NH4)2SO4 and NaCl (activity parameterization, osmotic coefficient, and van't Hoff factor models). The uncertainties related to the model parameterizations of water activity clearly exceeded the CCNC measurement precision. Relative deviations caused by different ways of calculating or approximating solution density and surface tension did not exceed 3% for (NH4)2SO4 and 1.5% for NaCl. Nevertheless, they did exceed the CCNC measurement precision under well-defined operating conditions and should not be neglected in studies aimed at high accuracy. To ensure comparability of results, we suggest that CCN studies should always report exactly which Köhler model equations and parameterizations of solution properties were used. Substantial differences between the CCNC calibration results obtained with (NH4)2SO4 and NaCl aerosols under equal experimental conditions (relative deviations of Seff up to ~10%) indicate inconsistencies between widely used activity parameterizations derived from electrodynamic balance (EDB) single particle experiments (Tang and Munkelwitz, 1994; Tang, 1996) and hygroscopicity tandem differential mobility analyzer (HTDMA) aerosol experiments (Kreidenweis et al., 2005). Therefore, we see a need for further evaluation and experimental confirmation of preferred data sets and parameterizations for the activity of water in dilute aqueous (NH4)2SO4 and NaCl solutions. The experimental results were also used to test the CCNC flow model of Lance et al.~(2006), which describes the dependence of Seff on temperature, pressure, and flow rate in the CCN counter. This model could be applied after subtraction of a near-constant temperature offset and derivation of an instrument-specific thermal resistance parameter (RT?1.8 K W?1). At Seff>0.1% the relative deviations between the flow model and experimental results were mostly less than 5%, when the same Köhler model approach was used. At Seff?.1%, however, the deviations exceeded 20%, which can be attributed to non-idealities which also caused the near-constant temperature offset. Therefore, we suggest that the CCNC flow model can be used to extrapolate calibration results, but should generally be complemented by calibration experiments performed under the relevant operating conditions ? during field campaigns as well as in laboratory studies

Swinging and tumbling of elastic capsules in shear flow

The deformation of an elastic micro-capsule in an infinite shear flow is studied numerically using a spectral method. The shape of the capsule and the hydrodynamic flow field are expanded into smooth basis functions. Analytic expressions for the derivative of the basis functions permit the evaluation of elastic and hydrodynamic stresses and bending forces at specified grid points in the membrane. Compared to methods employing a triangulation scheme, this method has the advantage that the resulting capsule shapes are automatically smooth, and few modes are needed to describe the deformation accurately. Computations are performed for capsules both with spherical and ellipsoidal unstressed reference shape. Results for small deformations of initially spherical capsules coincide with analytic predictions. For initially ellipsoidal capsules, recent approximative theories predict stable oscillations of the tank-treading inclination angle, and a transition to tumbling at low shear rate. Both phenomena have also been observed experimentally. Using our numerical approach we could reproduce both the oscillations and the transition to tumbling. The full phase diagram for varying shear rate and viscosity ratio is explored. While the numerically obtained phase diagram qualitatively agrees with the theory, intermittent behaviour could not be observed within our simulation time. Our results suggest that initial tumbling motion is only transient in this region of the phase diagram.Comment: 20 pages, 7 figure