Análisis multiescala de las comunidades de coral hermatípico del Pacífico Central Mexicano

The Mexican Central Pacific is located in a zone of oceanographic transition between two biogeographic provinces with particular conditions that affect the associated fauna. The objective of this study was to evaluate the variation of hermatypic coral assemblages in this region and to determine their relationship with the heterogeneity of the benthonic habitat and spatial variables. A total of 156 transects were carried out at 41 sites in the years 2010 and 2011. The sampling effort returned 96.7% of the coral richness expected for the area, with a total of 15 species recorded. The results showed that richness, diversity and cover of corals varied only at the site and state scales. However, the composition and coverage of all coral species, as well as the benthonic habitat structure, differed significantly across the study scales (i.e. sites, zones and states). Canonical redundancy analysis showed that variation in the richness, diversity and assemblages of corals was explained by the cover of live corals, articulated calcareous algae, sandy substrate, sponges and fleshy macroalgae. This study suggests that local scale (i.e. site) variation in the coral assemblages of the Mexican Central Pacific is the result of the heterogeneity of the benthonic habitat, while geomorphological and oceanographic characteristics play a greater role at regional scale.El Pacífico Central Mexicano se localiza en una zona de transición oceanográfica entre dos provincias biogeográficas con condiciones ambientales particulares que afectan la fauna asociada. El objetivo del estudio fue evaluar la variación de las comunidades de coral hermatípico de esta región y determinar su relación con la heterogeneidad del hábitat bentónico y variables espaciales. Se realizaron 156 transectos en 41 sitios en los años 2010 y 2011. El esfuerzo de muestreo representó el 96.7% de la riqueza de coral esperada para el área, con un total de 15 especies registradas. Los resultados mostraron que la riqueza, diversidad y cobertura de corales variaron sólo en las escalas de sitio y de estado. En cambio, la composición y cobertura de todas las especies de coral, así como la estructura del hábitat bentónico, fueron significativamente diferentes en todas las escalas estudiadas (i.e. sitio, zona y estado). Los análisis de redundancia canónica mostraron que la variación de la riqueza, diversidad y de las comunidades de corales eran explicadas por la cobertura de coral vivo, algas calcáreas articuladas, sustrato arenoso, esponjas y macroalgas carnosas. Este trabajo sugiere que la variación de las comunidades de coral en el Pacífico Central Mexicano a escala local (i.e. sitio) se debe a la heterogeneidad del hábitat bentónico, mientras que a escala regional, las características geomorfológicas y oceanográficas desempeñan un papel más importante

Ensamblajes bacterianos asociados a especies de coral del Pacífico central mexicano

The functional role of coral-associated bacteria and their contribution to coral health is still largely unknown. The first necessary step to address this gap in the knowledge is based on characterization of the microbial assemblage of the coral and the species-specific, temporal and spatial variation in its diversity. Branched corals (e.g., genus Pocillopora), are the main builders of coral reefs worldwide. This study evaluated the bacteria associated with the mucus and tissues of Pocillopora damicornis and Pocillopora verrucosa, as well as that of the seawater and surrounding sediments, in 6 sites of the Mexican Central Pacific during summer and winter seasons. The molecular techniques DGGE and RFLP were used with the 16S rDNA to assess the most abundant bacterial OTUs. The relationships between the bacterial-coral assemblage and environmental and spatial variables of the reef surroundings were also evaluated, using the multivariate analyses. Twenty different Operational Taxonomic Units (OTU) were obtained, with the highest number presented by the sediments. Specificity of bacterial groups was found for each coral species, as well as between the tissue and mucus of each species. The results showed that the bacterial dominant groups were similar between seasons, but these showed significant spatial variations among substrates within sites, as well as per substrate across all sites. The environmental variables that explained the variation of the dominant bacterial groups in corals and sea water were the coverages of fleshy macroalgae, live coral and sponge. In contrast, variation in the sediments was explained by the coverages of sand, rubble and rock.El papel funcional de las bacterias asociadas a corales y su contribución a la salud del coral es aún desconocido en gran medida. Es necesario que primero se caracterice el ensamblaje microbiano del coral y sus cambios en la diversidad a través de las especies de coral, el espacio y tiempo. Los corales ramificados (e.g., género Pocillopora) son los principales constructores arrecifales a nivel mundial. Este estudio evaluó la estructura bacteriana asociada al mucus y tejidos de Pocillopora damicornis y Pocillopora verrucosa, así como del agua de mar y sedimentos circundantes en 6 sitios del Pacífico central mexicano. Se emplearon las técnicas DGGE y RFLP del ADNr 16S para generar los perfiles de bandeo o evaluar la diversidad. Además, se evaluó la relación del ensamblaje bacteriano-coral con variables ambientales y espaciales del entorno arrecifal (de cada sitio), utilizando análisis multivariados. Se obtuvieron 20 Unidades Taxonómicas Operacionales (OTU) diferentes, siendo los sedimentos los que presentaron mayor número. Se encontró una especificidad de grupos bacterianos para cada especie de coral, así como entre el tejido y mucus de cada especie. Los resultados mostraron que los grupos de bacterias dominantes variaron entre sustratos y entre sitios, encontrando, sólo una variación espacial significativa. Las variables ambientales que explican la variación de los grupos bacterianos dominantes en corales y agua de mar fueron las coberturas de macroalgas carnosas, coral vivo y esponja. En cambio, la variación en los sedimentos fue explicada por las coberturas de arena, escombro y roc

Pathogenic Huntingtin Repeat Expansions in Patients with Frontotemporal Dementia and Amyotrophic Lateral Sclerosis.

We examined the role of repeat expansions in the pathogenesis of frontotemporal dementia (FTD) and amyotrophic lateral sclerosis (ALS) by analyzing whole-genome sequence data from 2,442 FTD/ALS patients, 2,599 Lewy body dementia (LBD) patients, and 3,158 neurologically healthy subjects. Pathogenic expansions (range, 40-64 CAG repeats) in the huntingtin (HTT) gene were found in three (0.12%) patients diagnosed with pure FTD/ALS syndromes but were not present in the LBD or healthy cohorts. We replicated our findings in an independent collection of 3,674 FTD/ALS patients. Postmortem evaluations of two patients revealed the classical TDP-43 pathology of FTD/ALS, as well as huntingtin-positive, ubiquitin-positive aggregates in the frontal cortex. The neostriatal atrophy that pathologically defines Huntington's disease was absent in both cases. Our findings reveal an etiological relationship between HTT repeat expansions and FTD/ALS syndromes and indicate that genetic screening of FTD/ALS patients for HTT repeat expansions should be considered

Outcomes from elective colorectal cancer surgery during the SARS-CoV-2 pandemic

This study aimed to describe the change in surgical practice and the impact of SARS-CoV-2 on mortality after surgical resection of colorectal cancer during the initial phases of the SARS-CoV-2 pandemic

Molecular Phylogenetics of Trapezia Crabs in the Central Mexican Pacific

To date, Trapezia spp. crabs have been considered obligate symbionts of pocilloporid corals. They protect their coral hosts from predators and are essential for the health of certain coral species. However, the basic details of this group of crustaceans are lacking, and there is a need for species-level molecular markers. The Tropical Eastern Pacific (TEP) region harbors important coral communities mainly built by corals of the genus Pocillopora, with three known Trapezia species known to associate with them: Trapezia bidentata, T. formosa and T. corallina. Both taxonomic and molecular analyses were carried out with samples of all three crab species collected from Pocillopora spp. in the Central Mexican Pacific. Analysis of both a mitochondrial and a nuclear gene revealed only two species, T. corallina and T. bidentata. T. formosa however appears to be a morphotype of T. bidentata. The use of integrative taxonomy for this group has increased the knowledge of the biodiversity not only of the study area, but of the whole TEP and will enhance the future study of the Trapezia–Pocillopora symbiosis

Calcification and growth rate recovery of the reef-building Pocillopora species in the northeast tropical Pacific following an ENSO disturbance

Pocilloporids are one of the major reef-building corals in the eastern tropical Pacific (ETP) and also the most affected by thermal stress events, mainly those associated with El Niño/Southern Oscillation (ENSO) periods. To date, coral growth parameters have been poorly reported in Pocillopora species in the northeastern region of the tropical Pacific. Monthly and annual growth rates of the three most abundant morphospecies (P. cf. verrucosa, P. cf. capitata, and P. cf. damicornis) were evaluated during two annual periods at a site on the Pacific coast of Mexico. The first annual period, 2010–2011 was considered a strong ENSO/La Niña period with cool sea surface temperatures, then followed by a non-ENSO period in 2012–2013. The linear extension rate, skeletal density, and calcification rate averaged (±SD) were 2.31 ± 0.11 cm yr−1, 1.65 ± 0.18 g cm−3, 5.03 ± 0.84 g cm−2 yr-1 respectively, during the strong ENSO event. In contrast, the respective non-ENSO values were 3.50 ± 0.64 cm yr−1, 1.70 ± 0.18 g cm−3, and 6.02 ± 1.36 g cm−2 yr−1. This corresponds to 52% and 20% faster linear extension and calcification rates, respectively, during non-ENSO period. The evidence suggests that Pocillopora branching species responded positively with faster growth rates following thermal anomalies, which allow them to maintain coral communities in the region

Calcification and growth rate recovery of the reef-building Pocillopora species in the northeast tropical Pacific following an ENSO disturbance

Pocilloporids are one of the major reef-building corals in the eastern tropical Pacific (ETP) and also the most affected by thermal stress events, mainly those associated with El Niño/Southern Oscillation (ENSO) periods. To date, coral growth parameters have been poorly reported in Pocillopora species in the northeastern region of the tropical Pacific. Monthly and annual growth rates of the three most abundant morphospecies (P. cf. verrucosa, P. cf. capitata, and P. cf. damicornis) were evaluated during two annual periods at a site on the Pacific coast of Mexico. The first annual period, 2010–2011 was considered a strong ENSO/La Niña period with cool sea surface temperatures, then followed by a non-ENSO period in 2012–2013. The linear extension rate, skeletal density, and calcification rate averaged (±SD) were 2.31 ± 0.11 cm yr−1, 1.65 ± 0.18 g cm−3, 5.03 ± 0.84 g cm−2 yr-1 respectively, during the strong ENSO event. In contrast, the respective non-ENSO values were 3.50 ± 0.64 cm yr−1, 1.70 ± 0.18 g cm−3, and 6.02 ± 1.36 g cm−2 yr−1. This corresponds to 52% and 20% faster linear extension and calcification rates, respectively, during non-ENSO period. The evidence suggests that Pocillopora branching species responded positively with faster growth rates following thermal anomalies, which allow them to maintain coral communities in the region

The complete mitogenome of excavating sponge Thoosa mismalolli (Demospongiae, Tetractinellida, Thoosidae) from Northeastern Tropical Pacific

The complete mitogenome of Thoosa mismalolli Carballo, Cruz-Barraza & Gómez, 2004 (Tetractinellida, Thoosidae) was sequenced. This is the first complete mitogenome of the suborden Thoosina and the third Tetractinellid so far. The mitochondrial genome of T. mismalolli was assembled based on reads obtained with the Illumina HiSeq platform. The length of complete mitogenome is 19,019 bp long and contained 14 protein-coding genes and 23 tRNA, with two tRNA genes. Phylogenetic reconstruction (maximum-likelihood) based on mitogenome of Tetractinellids, supports T. mismalolli as a sister group. This result is congruent with those obtained with molecular markers (CO1, 18S, and 28S), supporting the monophyletic status of Thoosa and providing additional molecular data in favor of the suborder Thoosina

Calcification of coral assemblages in the eastern Pacific: reshuffling calcification scenarios under climate change

The rearrangement of coral assemblages may produce significant changes in coral community calcification, yet it is not understood how the modification of community structure in depauperate areas under climate change scenarios may affect reef functionality. Observed coral community calcification (OCC) was calculated using coral cover data from 126 sites across the eastern tropical Pacific (ETP). To assess the effect that species assemblages exert on potential coral community calcification (PCC) of ETP reefs, we implemented a novel permutation approach for this purpose. We contrasted OCC across the ETP against the PCC of hypothetical monospecific and maximum ecological evenness (ME) ETP reefs and monogeneric Indo-Pacific (IP) and Caribbean (C) reefs. Average coral cover (21 ± 23%; mean ± SD) and OCC (8.23 ± 11.32 kg m−2 yr−1; mean ± SD) in the ETP were not related to species richness but to Pocillopora abundance and calcification. For any level of coral abundance or species richness, the permutation model indicates that PCC depends on community structure: the PCC of Pocillopora monospecific reefs reaches its maximum; PCC drops to half of its potential when ME is attained; and PCC reaches its minimum when slow-growing species turn dominant. A dynamic model with changing community structure based on the differential species tolerance to climate change showed a similar pattern as the permutation model. ETP Pocillopora reefs have lower PCC than IP Acropora, IP Pocillopora and C Acropora. Massive taxa are more tolerant to climate change and could replace branching taxa if environmental pressure trends in the ETP continue, meaning an ∼85% drop in PCC.</p

Spatial and temporal patterns in the coral assemblage at Clipperton Atoll: a sentinel reef in the Eastern Tropical Pacific

Este artículo contiene 11 páginas, 5 figuras, 1 tabla.Isolated coral reef habitats are unique systems to study the natural dynamics of coral traits and their natural acclimatization, adaptation, and recovery from globalscale stressors such as thermally induced bleaching events. This study evaluates the spatial and temporal changes in coral community attributes (diversity, live cover, and coral assemblage structure) over 14 years (2005–2019) at Clipperton, an extremely remote Eastern Tropical Pacific (ETP) atoll. The atoll exhibited overall high coral cover (~ 50–60%) dominated by massive species (Porites spp.), yet we observed large variation (44–56%) in coral community attributes among survey years (2005, 2016, 2019) with depth explaining most of the variation. Live coral cover increased in 2019 after a severe thermal stress event (El Niño, 2015– 2016) and many tropical cyclones, which also caused a shift in assemblage structure from branching Pocillopora to massive Porites in the shallower reef zones, resulting in a less well-defined depth gradient. These changes in coral assemblage structure may have long-term effects on the configuration of the physical reef framework of the well-conserved coral reef ecosystems at Clipperton and consequently may alter the ecological functionality of one of the most important biogeographic stepping stones in the central Pacific and ETP regions.The present work was supported by Consejo Nacional de Ciencia y Tecnología (CONACYT) postdoctoral fellowship (CVU 410380) to JJATL. We thank the government of France, The Embassy of France in Mexico, Ministère Des Outre-Mer, the Mexican government, Centro de Investigación de la Isla Observatorio del Medio Ambiente (CRIOBE USR3278 EPHE-CNRS-UPVD), Instituto Nacional de Pesca y Acuacultura (INAPESCA), and the oceanographic research vessel Jorge Carranza Fraser from INAPESCA and also thank the Haut Commissariat de la République en Polynésie française for permission to perform this research at Clipperton Atoll (CITES permit no. FR1998700218-E).Peer reviewe