Observations of cold dust in nearby elliptical galaxies

Spectral energy distribution (SED) analyses that include new millimeter to far-infrared (FIR) observations obtained with continuum instruments on the Nobeyama and James Clerk Maxwell Telescopes and the Infrared Space Observatory are presented for seven nearby (<45 Mpc) FIR-bright elliptical galaxies. These are analyzed together with archival FIR and shortwave radio data obtained from the NASA/IPAC Extragalactic Database (NED). The radio to infrared SEDs are best-fitted by power law plus graybody models of dust residing in the central galactic regions within a 2.4 kpc diameter and with temperatures between ~21 and 28 K, emissivity index simeq2, and masses from ~1.6 to 19 × 105 M☉. The emissivity index is consistent with dust constituting amorphous silicate and carbonaceous grains previously modeled for stellar-heated dust observed in the Galaxy and other nearby extragalactic sources. Using updated dust absorption coefficients for this type of dust, dust masses are estimated that are similar to those determined from earlier FIR data alone, even though the latter results implied hotter dust temperatures. Fluxes and masses that are consistent with the new FIR and submillimeter data are estimated for dust cooler than 20 K within the central galactic regions. Tighter physical constraints for such cold, diffuse dust (if it exists) with low surface brightness will need sensitive FIR to submillimeter observations with the Spitzer Space Telescope, SCUBA2, or ALMA

Citizen meets social science : Predicting volunteer involvement in a global freshwater monitoring experiment

FreshWater Watch is a global citizen science project that seeks to advance the understanding and stewardship of freshwater ecosystems across the globe through analysis of their physical and chemical properties by volunteers. To date, literature concerning citizen science has mainly focused on its potential to generate unprecedented volumes of data. In this paper, we focus instead on the data relating to the volunteer experience and ask key questions about volunteer engagement with the project. For example, we ask what factors influence: a) volunteer data submission following a training event and b) the number of water quality samples volunteers subsequently submit. We used a binomial model to identify the factors that influence the retention of volunteers after training. In addition, we used a generalized linear model (GLM) to examine the factors that affected the number of samples each citizen scientist submitted. In line with other citizen science projects, most people trained did not submit any data, and 1% of participants contributed 47% of the data. We found that the statistically significant factors associated with submission of data after training were: whether training was given on how to upload data, the number of volunteers that attended the training, whether the volunteer was assigned to a research team, the outside temperature, and the average engagement of others in the training group. The statistically significant factors associated with the quantity of data submitted were: the length of time volunteers were active in the project, whether training took place as part of a paid work day, the difficulty of the sampling procedure, how socially involved volunteers were in the project, average sampling group size, and engagement with online learning modules. Based on our results, we suggest that intrinsic motivation may be important for predicting volunteer retention after training and the number of samples collected subsequently. We suggest that, to maximize the contribution of citizen science to our understanding of the world around us, there is an urgent need to better understand the factors that drive volunteer retention and engagement

Submillimeter Continuum Properties of Cold Dust in the Inner Disk and Outflows of M82

Deep submillimeter (submm) continuum imaging observations of the starburst galaxy M82 are presented at 350, 450, 750 and 850 micron wavelengths, that were undertaken with the Submillimetre Common-User Bolometer Array (SCUBA) on the James Clerk Maxwell Telescope in Hawaii. The presented maps include a co-addition of submm data mined from the SCUBA Data Archive. The co-added data produce the deepest submm continuum maps yet of M82, in which low-level 850 micron continuum has been detected out to 1.5kpc, at least 10% farther in radius than any previously published submm detections of this galaxy. The overall submm morphology and spatial spectral energy distribution of M82 have a general north-south asymmetry consistent with H-alpha and X-ray winds, supporting the association of the extended continuum with outflows of dust grains from the disk into the halo. The new data raise interesting points about the origin and structure of the submm emission in the inner disk of M82. In particular, SCUBA short wavelength evidence of submm continuum peaks that are asymmetrically distributed along the galactic disk suggests the inner-disk emission is re-radiation from dust concentrations along a bar (or perhaps a spiral) rather than edges of a dust torus, as is commonly assumed. Higher resolution submm interferometery data from the Smithsonian Submillimeter Array and later Atacama Large Millimeter Array should spatially resolve and further constrain the reported dust emission structures in M82.Comment: Accepted by the Astronomical Journal -- 28 pages and 14 figure

A novel HLA-B18 restricted CD8+ T cell epitope is efficiently cross-presented by dendritic cells from soluble tumor antigen

NY-ESO-1 has been a major target of many immunotherapy trials because it is expressed by various cancers and is highly immunogenic. In this study, we have identified a novel HLA-B*1801-restricted CD8&lt;sup&gt;+&lt;/sup&gt;T cell epitope, NY-ESO-1&lt;sub&gt;88–96&lt;/sub&gt; (LEFYLAMPF) and compared its direct- and cross-presentation to that of the reported NY-ESO-1&lt;sub&gt;157–165&lt;/sub&gt; epitope restricted to HLA-A*0201. Although both epitopes were readily cross-presented by DCs exposed to various forms of full-length NY-ESO-1 antigen, remarkably NY-ESO-1&lt;sub&gt;88–96&lt;/sub&gt; is much more efficiently cross-presented from the soluble form, than NY-ESO-1&lt;sub&gt;157–165&lt;/sub&gt;. On the other hand, NY-ESO-1&lt;sub&gt;157–165&lt;/sub&gt; is efficiently presented by NY-ESO-1-expressing tumor cells and its presentation was not enhanced by IFN-γ treatment, which induced immunoproteasome as demonstrated by Western blots and functionally a decreased presentation of Melan A&lt;sub&gt;26–35&lt;/sub&gt;; whereas NY-ESO-1&lt;sub&gt;88–96&lt;/sub&gt; was very inefficiently presented by the same tumor cell lines, except for one that expressed high level of immunoproteasome. It was only presented when the tumor cells were first IFN-γ treated, followed by infection with recombinant vaccinia virus encoding NY-ESO-1, which dramatically increased NY-ESO-1 expression. These data indicate that the presentation of NY-ESO-1&lt;sub&gt;88–96&lt;/sub&gt; is immunoproteasome dependent. Furthermore, a survey was conducted on multiple samples collected from HLA-B18+ melanoma patients. Surprisingly, all the detectable responses to NY-ESO-1&lt;sub&gt;88–96&lt;/sub&gt; from patients, including those who received NY-ESO-1 ISCOMATRIX™ vaccine were induced spontaneously. Taken together, these results imply that some epitopes can be inefficiently presented by tumor cells although the corresponding CD8&lt;sup&gt;+&lt;/sup&gt;T cell responses are efficiently primed in vivo by DCs cross-presenting these epitopes. The potential implications for cancer vaccine strategies are further discussed

Complex exon-intron marking by histone modifications is not determined solely by nucleosome distribution

It has recently been shown that nucleosome distribution, histone modifications and RNA polymerase II (Pol II) occupancy show preferential association with exons (“exon-intron marking”), linking chromatin structure and function to co-transcriptional splicing in a variety of eukaryotes. Previous ChIP-sequencing studies suggested that these marking patterns reflect the nucleosomal landscape. By analyzing ChIP-chip datasets across the human genome in three cell types, we have found that this marking system is far more complex than previously observed. We show here that a range of histone modifications and Pol II are preferentially associated with exons. However, there is noticeable cell-type specificity in the degree of exon marking by histone modifications and, surprisingly, this is also reflected in some histone modifications patterns showing biases towards introns. Exon-intron marking is laid down in the absence of transcription on silent genes, with some marking biases changing or becoming reversed for genes expressed at different levels. Furthermore, the relationship of this marking system with splicing is not simple, with only some histone modifications reflecting exon usage/inclusion, while others mirror patterns of exon exclusion. By examining nucleosomal distributions in all three cell types, we demonstrate that these histone modification patterns cannot solely be accounted for by differences in nucleosome levels between exons and introns. In addition, because of inherent differences between ChIP-chip array and ChIP-sequencing approaches, these platforms report different nucleosome distribution patterns across the human genome. Our findings confound existing views and point to active cellular mechanisms which dynamically regulate histone modification levels and account for exon-intron marking. We believe that these histone modification patterns provide links between chromatin accessibility, Pol II movement and co-transcriptional splicing

Disentangling a group of lensed submm galaxies at z∼ 2.9

MS0451.6−0305 is a rich galaxy cluster whose strong lensing is particularly prominent at submm wavelengths. We combine new Submillimetre Common-User Bolometer Array (SCUBA)-2 data with imaging from Herschel Spectral and Photometric Imaging Receiver (SPIRE) and PACS and Hubble Space Telescope in order to try to understand the nature of the sources being lensed. In the region of the ‘giant submm arc', we uncover seven multiply imaged galaxies (up from the previously known four), of which six are found to be at a redshift of z∼2.9, and possibly constitute an interacting system. Using a novel forward-modelling approach, we are able to simultaneously deblend and fit spectral energy distributions to the individual galaxies that contribute to the giant submm arc, constraining their dust temperatures, far-infrared luminosities, and star formation rates (SFRs). The submm arc first identified by SCUBA can now be seen to be composed of at least five distinct sources, four of these within a galaxy group at z∼2.9. Only a handful of lensed galaxy groups at this redshift are expected on the sky, and thus this is a unique opportunity for studying such systems in detail. The total unlensed luminosity for this galaxy group is (3.1±0.3)×1012 L⊙, which gives an unlensed SFR of (450±50) M⊙yr−1. This finding suggests that submm source multiplicity, due to physically associated groupings as opposed to chance alignment, extends to fainter flux densities than previously discovered. Many of these systems may also host optical companions undetected in the submm, as is the case her

The androgen receptor controls expression of the cancer-associated sTn antigen and cell adhesion through induction of ST6GalNAc1 in prostate cancer

Patterns of glycosylation are important in cancer, but the molecular mechanisms that drive changes are often poorly understood. The androgen receptor drives prostate cancer (PCa) development and progression to lethal metastatic castration-resistant disease. Here we used RNA-Seq coupled with bioinformatic analyses of androgen-receptor (AR) binding sites and clinical PCa expression array data to identify ST6GalNAc1 as a direct and rapidly activated target gene of the AR in PCa cells. ST6GalNAc1 encodes a sialytransferase that catalyses formation of the cancer-associated sialyl-Tn antigen (sTn), which we find is also induced by androgen exposure. Androgens induce expression of a novel splice variant of the ST6GalNAc1 protein in PCa cells. This splice variant encodes a shorter protein isoform that is still fully functional as a sialyltransferase and able to induce expression of the sTn-antigen. Surprisingly, given its high expression in tumours, stable expression of ST6GalNAc1 in PCa cells reduced formation of stable tumours in mice, reduced cell adhesion and induced a switch towards a more mesenchymal-like cell phenotype in vitro. ST6GalNAc1 has a dynamic expression pattern in clinical datasets, beingsignificantly up-regulated in primary prostate carcinoma but relatively down-regulated in established metastatic tissue. ST6GalNAc1 is frequently upregulated concurrently with another important glycosylation enzyme GCNT1 previously associated with prostate cancer progression and implicated in Sialyl Lewis X antigen synthesis. Together our data establishes an androgen-dependent mechanism for sTn antigen expression in PCa, and are consistent with a general role for the androgen receptor in driving important coordinate changes to the glycoproteome during PCa progression