Affinities of the family Sollasellidae (Porifera, Demospongiae). II. Molecular evidence

This is the second part of a revision and re-classification of the demosponge family Sollasellidae, and an example of a successful use of combined morphological and molecular data. Sollasella had been a poorly known, long forgotten taxon, placed incertae sedis in the order Hadromerida in the last major revision of the demosponges. It has recently been suggested to belong to Raspailiidae in the order Poecilosclerida due to striking morphological similarities. The present analysis verified this re-classification using molecular markers. Comparing 28S rDNA fragments of Sollasella cervicornis, a newly described species S. moretonensis and a representative set of raspailiid and hadromerid samples. In our analyses Sollasella clearly clusters inside the Raspailiidae clade, and distantly from hadromerid taxa. Supporting morphological hypothesis of Van Soest et al. (2006), that Sollasella is a raspailiid sponge

Soft sponges with tricky tree: On the phylogeny of dictyoceratid sponges

Keratose (horny) sponges constitute a very difficult group of Porifera in terms of taxonomy due to their paucity of diagnostic morphological features. (Most) keratose sponges possess no mineral skeletal elements, but an arrangement of organic (spongin) fibers, with little taxonomic or phylogenetic information. Molecular phylogenetics have targeted this evolutionary and biochemically important lineage numerous times, but the conservative nature of popular markers combined with ambiguous identification of the sponge material has so far prevented any robust phylogeny. In the following study, we provide a phylogenetic hypothesis of the keratose order Dictyoceratida based on nuclear markers of higher resolution potential (ITS and 28S C‐region), and particularly aim for the inclusion of type specimens as reference material. Our results are compared with previously published data of CO1, 18S, and 28S (D3‐D5) data, and indicate the paraphyly of the largest dictyoceratid family, the Thorectidae, due to a sister group relationship of its subfamily Phyllospongiinae with Family Spongiidae. Irciniidae can be recovered as monophyletic. Results on genus level and implications on phylogenetic signals of the most frequently described morphological characters are discussed

Nothing in (sponge) biology makes sense - except when based on holotypes

Sponge species are infamously difficult to identify for non-experts due to their high morphological plasticity and the paucity of informative morphological characters. The use of molecular techniques certainly helps with species identification, but unfortunately it requires prior reference sequences. Holotypes constitute the best reference material for species identification, however their usage in molecular systematics and taxonomy is scarce and frequently not even attempted, mostly due to their antiquity and preservation history. Here we provide case studies in which we demonstrate the importance of using holo-type material to answer phylogenetic and taxonomic questions. We also demonstrate the possibility of sequencing DNA fragments out of century-old holotypes. Furthermore we propose the deposition of DNA sequences in conjunction with new species descriptions

A tsunami generated by a strike-slip event.: constraints from GPS and SAR data on the 2018 Palu earthquake

A devastating tsunami struck Palu Bay in the wake of the 28 September 2018 Mw = 7.5 Palu earthquake (Sulawesi, Indonesia). With a predominantly strike-slip mechanism, the question remains whether this unexpected tsunami was generated by the earthquake itself, or rather by earthquake-induced landslides. In this study we examine the tsunami potential of the co-seismic deformation. To this end, we present a novel geodetic dataset of GPS and multiple SAR-derived displacement fields to estimate a 3D co-seismic surface deformation field. The data reveal a number of fault bends, conforming to our interpretation of the tectonic setting as a transtensional basin. Using a Bayesian framework, we provide robust finite fault solutions of the co-seismic slip distribution, incorporating several scenarios of tectonically feasible fault orientations below the bay. These finite fault scenarios involve large co-seismic uplift ( > 2 m) below the bay due to thrusting on a restraining fault bend that connects the offshore continuation of two parallel onshore fault segments. With the co-seismic displacement estimates as input we simulate a number of tsunami cases. For most locations for which video-derived tsunami waveforms are available our models provide a qualitative fit to leading wave arrival times and polarity. The modeled tsunamis explain most of the observed runup. We conclude that co-seismic deformation was the main driver behind the tsunami that followed the Palu earthquake. Our unique geodetic dataset constrains vertical motions of the sea floor, and sheds new light on the tsunamigenesis of strike-slip faults in transtensional basins

Global Diversity of Sponges (Porifera)

With the completion of a single unified classification, the Systema Porifera (SP) and subsequent development of an online species database, the World Porifera Database (WPD), we are now equipped to provide a first comprehensive picture of the global biodiversity of the Porifera. An introductory overview of the four classes of the Porifera is followed by a description of the structure of our main source of data for this paper, the WPD. From this we extracted numbers of all ‘known’ sponges to date: the number of valid Recent sponges is established at 8,553, with the vast majority, 83%, belonging to the class Demospongiae. We also mapped for the first time the species richness of a comprehensive set of marine ecoregions of the world, data also extracted from the WPD. Perhaps not surprisingly, these distributions appear to show a strong bias towards collection and taxonomy efforts. Only when species richness is accumulated into large marine realms does a pattern emerge that is also recognized in many other marine animal groups: high numbers in tropical regions, lesser numbers in the colder parts of the world oceans. Preliminary similarity analysis of a matrix of species and marine ecoregions extracted from the WPD failed to yield a consistent hierarchical pattern of ecoregions into marine provinces. Global sponge diversity information is mostly generated in regional projects and resources: results obtained demonstrate that regional approaches to analytical biogeography are at present more likely to achieve insights into the biogeographic history of sponges than a global perspective, which appears currently too ambitious. We also review information on invasive sponges that might well have some influence on distribution patterns of the future

A Tsunami Generated by a Strike-Slip Event: Constraints From GPS and SAR Data on the 2018 Palu Earthquake

A devastating tsunami struck Palu Bay in the wake of the 28 September 2018 Mw = 7.5 Palu earthquake (Sulawesi, Indonesia). With a predominantly strike-slip mechanism, the question remains whether this unexpected tsunami was generated by the earthquake itself, or rather by earthquake-induced landslides. In this study we examine the tsunami potential of the co-seismic deformation. To this end, we present a novel geodetic data set of Global Positioning System and multiple Synthetic Aperture Radar-derived displacement fields to estimate a 3D co-seismic surface deformation field. The data reveal a number of fault bends, conforming to our interpretation of the tectonic setting as a transtensional basin. Using a Bayesian framework, we provide robust finite fault solutions of the co-seismic slip distribution, incorporating several scenarios of tectonically feasible fault orientations below the bay. These finite fault scenarios involve large co-seismic uplift (>2 m) below the bay due to thrusting on a restraining fault bend that connects the offshore continuation of two parallel onshore fault segments. With the co-seismic displacement estimates as input we simulate a number of tsunami cases. For most locations for which video-derived tsunami waveforms are available our models provide a qualitative fit to leading wave arrival times and polarity. The modeled tsunamis explain most of the observed runup. We conclude that co-seismic deformation was the main driver behind the tsunami that followed the Palu earthquake. Our unique geodetic data set constrains vertical motions of the sea floor, and sheds new light on the tsunamigenesis of strike-slip faults in transtensional basins

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead