Epidermoid cyst of the testis in a 12-year-old child : case report

Background: Epidermoid cyst is a rare benign tumor of the testis. High-resolution ultrasonography and normal α-fetoproteine level enable to recognize this pathology in order to spare the testis by organpreserving surgery. Case report: We present the case of a 12-year-old boy with painless mass in the slightly enlarged right testis. Ultrasonography revealed typical appearance of epidermoid cyst. Results: Doubtless diagnosis based on ultrasonography and low α-fetoproteine level allowed testissparing surgery instead of orchidectomy. Recognition of this rare tumor is particularly significant for prepuberty boys as it allows maintaining full procreation ability and does not compromise endocrinological functions during adolescence

Genomic-Phenomic Reciprocal Illumination: Desyopone hereon gen. et sp. nov., an Exceptional Aneuretine-like Fossil Ant from Ethiopian Amber (Hymenoptera: Formicidae: Ponerinae) †

Simple Summary: We describe a new species of extinct ants from Miocene-aged Ethiopian amber, based on males that resemble species of the relictual lineage Aneuretinae, but which effectively belong to the Ponerinae, as revealed by advanced 3D-imaging technology (synchrotron radiation micro-computed tomography, SR-µ-CT). We subsequently propose a revision of ant classification at the subfamily level. We also recognize that the new species belongs to a new genus based on recent phylogenomic results that have clarified the generic boundaries of Ponerini ants. Our work, therefore, represents an example of reciprocal illumination between phenomic and genomic data. Abstract: Fossils are critical for understanding the evolutionary diversification, turnover, and morphological disparification of extant lineages. While fossils cannot be sequenced, phenome-scale data may be generated using micro-computed tomography (µ-CT), thus revealing hidden structures and internal anatomy, when preserved. Here, we adduce the male caste of a new fossil ant species from Miocene Ethiopian amber that resembles members of the Aneuretinae, matching the operational definition of the subfamily. Through the use of synchrotron radiation for µ-CT, we critically test the aneuretine-identity hypothesis. Our results indicate that the new fossils do not belong to the Aneuretinae, but rather the Ponerini (Ponerinae). Informed by recent phylogenomic studies, we were able to place the fossils close to the extant genus Cryptopone based on logical character analysis, with the two uniquely sharing absence of the subpetiolar process among all ponerine genera. Consequently, we: (1) revise the male-based key to the global ant subfamilies; (2) revise the definitions of Aneuretinae, Ponerinae, Platythyreini, and Ponerini; (3) discuss the evolution of ant mandibles; and (4) describe the fossils as † Desyopone hereon gen. et sp. nov. Our study highlights the value of males for ant systematics and the tremendous potential of phenomic imaging technologies for the study of ant evolution

Establishing a pattern of 64-multi slice CT of polytraumatic patients

Background: Due to great technological progress made over the last decade in computer tomography, CT has become a very successful tool for diagnostic imaging in polytraumatic patients. The purpose of this study is an optimum selection of parameters to detect all post-traumatic pathologies in polytraumatic patients, with the application of minimum ionizing radiation. Material/Methods: 131 patients with a suspected polytrauma were studied following various scanning patterns with a 64-slice CT of the head, neck, thorax and abdominal cavity with pelvis. The patients were divided into three groups in accordance with the chosen scheme. Materials were analyzed with the following in view: increasing the efficacy of detecting pathologies, decreasing radiation dose, simplifying assessment and facilitating image archiving. Results: The following mean numbers of serious post-traumatic pathologies were diagnosed during one examination: group I - 1.8, group II - 2.8, and group III - 2.1. There was a statistically significant reduction in the number of reconstructions performed during one examination from 11.8 in group I, 8.3 in group II, to 7.2 in group III. Additionally, statistically significant reductions were obtained in the mean values of the dose-length product (DLP): 3361 mGy × cm (group I), 2805 mGy × cm (group II), 2583 mGy × cm (group III). Conclusions: The third scanning pattern, which comprised multiple adjacent sections scanned jointly, including a single trunk scan following the administration of a contrast material, is best in terms of evaluation comfort and the lowest radiation dose absorbed by the patient. Patterns II and III are most effective in detecting pathologies

Genomic-Phenomic Reciprocal Illumination: Desyopone hereon gen. et sp. nov., an Exceptional Aneuretine-like Fossil Ant from Ethiopian Amber (Hymenoptera: Formicidae: Ponerinae)

Fossils are critical for understanding the evolutionary diversification, turnover, and morphological disparification of extant lineages. While fossils cannot be sequenced, phenome-scale data may be generated using micro-computed tomography (µ-CT), thus revealing hidden structures and internal anatomy, when preserved. Here, we adduce the male caste of a new fossil ant species from Miocene Ethiopian amber that resembles members of the Aneuretinae, matching the operational definition of the subfamily. Through the use of synchrotron radiation for µ-CT, we critically test the aneuretine-identity hypothesis. Our results indicate that the new fossils do not belong to the Aneuretinae, but rather the Ponerini (Ponerinae). Informed by recent phylogenomic studies, we were able to place the fossils close to the extant genus Cryptopone based on logical character analysis, with the two uniquely sharing absence of the subpetiolar process among all ponerine genera. Consequently, we: (1) revise the male-based key to the global ant subfamilies; (2) revise the definitions of Aneuretinae, Ponerinae, Platythyreini, and Ponerini; (3) discuss the evolution of ant mandibles; and (4) describe the fossils as †Desyopone hereon gen. et sp. nov. Our study highlights the value of males for ant systematics and the tremendous potential of phenomic imaging technologies for the study of ant evolution

Visualizing codon usage within and across genomes : concepts and tools

Cost and time of genome sequencing have plummeted over the last decade. This leads to explosive growth of genetic databases and development of novel sequencing-based approaches to study various biological phenomena. The database growth was particularly beneficial for investigation of protein-coding sequences at the codon level, requiring the access to large sets of related genomes. Such studies are expected to illuminate biological forces that shape primary structure of coding sequences and predict their evolutionary trajectories more precisely. In addition to fundamental interest, codon usage studies are of ample practical value, for example, in drug discovery and genomic medicine areas. Nevertheless, the depth of our understanding of codon-related issues is currently shallower as compared to what we know about nucleotide and amino acid sequences. Besides the lack of adequate datasets in the early days of molecular biology, codon usage studies, in our opinion, suffer from underdevelopment of easy-to-use tools to analyze and visualize how codon sequence changes along the gene and across the homologous genes in course of evolution. In this review, we aim to describe main areas of codon usage studies with an emphasis on the tools that allow visual interpretation of the data. We discuss underlying principles of different approaches, what kind of statistics lends confidence in their results and what has to be done to further boost the field of codon usage research