Optically pumped resonance magnetometer for determining vectoral components in a spatial coordinate system Patent

Design and development of optically pumped resonance magnetometer for determining vectoral components in spatial coordinate syste

The uncombed penumbra

The uncombed penumbral model explains the structure of the sunspot penumbra in terms of thick magnetic fibrils embedded in a magnetic surrounding atmosphere. This model has been successfully applied to explain the polarization signals emerging from the sunspot penumbra. Thick penumbral fibrils face some physical problems, however. In this contribution we will offer possible solutions to these shortcomings.Comment: 6 pages, 2 figures. to appear in the proceedings of the Solar Polarization Workshop I

Waves as the source of apparent twisting motions in sunspot penumbrae

The motion of dark striations across bright filaments in a sunspot penumbra has become an important new diagnostic of convective gas flows in penumbral filaments. The nature of these striations has, however, remained unclear. Here we present an analysis of small scale motions in penumbral filaments in both simulations and observations. The simulations, when viewed from above, show fine structure with dark lanes running outwards from the dark core of the penumbral filaments. The dark lanes either occur preferentially on one side or alternate between both sides of the filament. We identify this fine structure with transverse (kink) oscillations of the filament, corresponding to a sideways swaying of the filament. These oscillations have periods in the range of 5-7 min and propagate outward and downward along the filament. Similar features are found in observed G-band intensity time series of penumbral filaments in a sunspot located near disk center obtained by the Broadband Filter Imager (BFI) on board {\it Hinode}. We also find that some filaments show dark striations moving to both sides of the filaments. Based on the agreement between simulations and observations we conclude that the motions of these striations are caused by transverse oscillations of the underlying bright filaments.Comment: Accepted for publication in Astrophysical Journal on 8th April 201

Magnetic Cycles in a Convective Dynamo Simulation of a Young Solar-type Star

Young solar-type stars rotate rapidly and many are magnetically active; some undergo magnetic cycles similar to the 22-year solar activity cycle. We conduct simulations of dynamo action in rapidly rotating suns with the 3D MHD anelastic spherical harmonic (ASH) code to explore dynamo action achieved in the convective envelope of a solar-type star rotating at 5 times the current solar rotation rate. Striking global-scale magnetic wreaths appear in the midst of the turbulent convection zone and show rich time-dependence. The dynamo exhibits cyclic activity and undergoes quasi-periodic polarity reversals where both the global-scale poloidal and toroidal fields change in sense on a roughly 1500 day time scale. These magnetic activity patterns emerge spontaneously from the turbulent flow and are more organized temporally and spatially than those realized in our previous simulations of the solar dynamo. We assess in detail the competing processes of magnetic field creation and destruction within our simulations that contribute to the global-scale reversals. We find that the mean toroidal fields are built primarily through an $\Omega$-effect, while the mean poloidal fields are built by turbulent correlations which are not necessarily well represented by a simple $\alpha$-effect. During a reversal the magnetic wreaths propagate towards the polar regions, and this appears to arise from a poleward propagating dynamo wave. The primary response in the convective flows involves the axisymmetric differential rotation which shows variations associated with the poleward propagating magnetic wreaths. In the Sun, similar patterns are observed in the poleward branch of the torsional oscillations, and these may represent poleward propagating magnetic fields deep below the solar surface. [abridged]Comment: 20 pages, 14 figures, emulateapj format; accepted for publication in ApJ. Expanded and published version of sections 5-6 from http://arxiv.org/abs/0906.240

The Gramicidin Dimer Shows Both EX1 and EX2 Mechanisms of H/D Exchange

We describe the use of H/D amide exchange and electrospray ionization mass spectrometry to study, in organic solvents, the pentadecapeptide gramicidin as a model for protein self association. In methanol-OD, all active H's in the peptide exchange for D within 5 min, indicating a monomer/dimer equilibrium that is shifted towards the fast-exchanging monomer. H/D exchange in n-propanol-OD, however, showed a partially protected gramicidin that slowly converts to a second species that exchanges nearly all the active hydrogens, indicating EX1 kinetics for the H/D exchange. We propose that this behavior is the result of the slower rate of unfolding in n-propanol compared with that in methanol. The rate constant for the unfolding of the dimer is the rate of disappearance of the partially protected species, and it agrees within a factor of two with a value reported in literature. The rate constant of dimer refolding can be determined from the ratio of the rate constant for unfolding and the affinity constant for the dimer, which we determined in an earlier study. The unfolding activation energy is 20 kcal mol−1, determined by performing the exchange experiments as a function of temperature. To study gramicidin in an even more hydrophobic medium than n-propanol, we measured its H/D exchange kinetics in a phospholipids vesicle and found a different H/D amide exchange behavior. Gramicidin is an unusual peptide dimer that can exhibit both EX1 and EX2 mechanisms for its H/D exchange, depending on the solvent

Searching for overturning convection in penumbral filaments: slit spectroscopy at 0.2 arcsec resolution

Recent numerical simulations of sunspots suggest that overturning convection is responsible for the existence of penumbral filaments and the Evershed flow, but there is little observational evidence of this process. Here we carry out a spectroscopic search for small-scale convective motions in the penumbra of a sunspot located 5 deg away from the disk center. The position of the spot is very favorable for the detection of overturning downflows at the edges of penumbral filaments. Our analysis is based on measurements of the Fe I 709.0 nm line taken with the Littrow spectrograph of the Swedish 1 m Solar Telescope under excellent seeing conditions. We compute line bisectors at different intensity levels and derive Doppler velocities from them. The velocities are calibrated using a nearby telluric line, with systematic errors smaller than 150 m/s. Deep in the photosphere, as sampled by the bisectors at the 80%-88% intensity levels, we always observe blueshifts or zero velocities. The maximum blueshifts reach 1.2 km/s and tend to be cospatial with bright penumbral filaments. In the line core we detect blueshifts for the most part, with small velocities not exceeding 300 m/s. Redshifts also occur, but at the level of 100-150 m/s, and only occasionally. The fact that they are visible in high layers casts doubts on their convective origin. Overall, we do not find indications of downflows that could be associated with overturning convection at our detection limit of 150 m/s. Either no downflows exist, or we have been unable to observe them because they occur beneath tau=1 or the spatial resolution/height resolution of the measurements is still insufficient.Comment: Accepted for publication in Ap

ProMoT : Modular Modeling for Systems Biology

Summary: PROMOT is a software designed to support efficient and comprehensible modeling, visualization and analysis of complex and large-scale models. In recent years it has been improved in many aspects. New functionality especially tailored for Systems Biology has been added. It is now a very convenient tool for modular modeling. Availability: PROMOT is an open source project and freely available at http://www.mpi-magdeburg.mpg.de/projects/promot/download.html