1,315 research outputs found
Optically pumped resonance magnetometer for determining vectoral components in a spatial coordinate system Patent
Design and development of optically pumped resonance magnetometer for determining vectoral components in spatial coordinate syste
The uncombed penumbra
The uncombed penumbral model explains the structure of the sunspot penumbra
in terms of thick magnetic fibrils embedded in a magnetic surrounding
atmosphere. This model has been successfully applied to explain the
polarization signals emerging from the sunspot penumbra. Thick penumbral
fibrils face some physical problems, however. In this contribution we will
offer possible solutions to these shortcomings.Comment: 6 pages, 2 figures. to appear in the proceedings of the Solar
Polarization Workshop I
Waves as the source of apparent twisting motions in sunspot penumbrae
The motion of dark striations across bright filaments in a sunspot penumbra
has become an important new diagnostic of convective gas flows in penumbral
filaments. The nature of these striations has, however, remained unclear. Here
we present an analysis of small scale motions in penumbral filaments in both
simulations and observations. The simulations, when viewed from above, show
fine structure with dark lanes running outwards from the dark core of the
penumbral filaments. The dark lanes either occur preferentially on one side or
alternate between both sides of the filament. We identify this fine structure
with transverse (kink) oscillations of the filament, corresponding to a
sideways swaying of the filament. These oscillations have periods in the range
of 5-7 min and propagate outward and downward along the filament. Similar
features are found in observed G-band intensity time series of penumbral
filaments in a sunspot located near disk center obtained by the Broadband
Filter Imager (BFI) on board {\it Hinode}. We also find that some filaments
show dark striations moving to both sides of the filaments. Based on the
agreement between simulations and observations we conclude that the motions of
these striations are caused by transverse oscillations of the underlying bright
filaments.Comment: Accepted for publication in Astrophysical Journal on 8th April 201
Magnetic Cycles in a Convective Dynamo Simulation of a Young Solar-type Star
Young solar-type stars rotate rapidly and many are magnetically active; some
undergo magnetic cycles similar to the 22-year solar activity cycle. We conduct
simulations of dynamo action in rapidly rotating suns with the 3D MHD anelastic
spherical harmonic (ASH) code to explore dynamo action achieved in the
convective envelope of a solar-type star rotating at 5 times the current solar
rotation rate. Striking global-scale magnetic wreaths appear in the midst of
the turbulent convection zone and show rich time-dependence. The dynamo
exhibits cyclic activity and undergoes quasi-periodic polarity reversals where
both the global-scale poloidal and toroidal fields change in sense on a roughly
1500 day time scale. These magnetic activity patterns emerge spontaneously from
the turbulent flow and are more organized temporally and spatially than those
realized in our previous simulations of the solar dynamo. We assess in detail
the competing processes of magnetic field creation and destruction within our
simulations that contribute to the global-scale reversals. We find that the
mean toroidal fields are built primarily through an -effect, while the
mean poloidal fields are built by turbulent correlations which are not
necessarily well represented by a simple -effect. During a reversal the
magnetic wreaths propagate towards the polar regions, and this appears to arise
from a poleward propagating dynamo wave. The primary response in the convective
flows involves the axisymmetric differential rotation which shows variations
associated with the poleward propagating magnetic wreaths. In the Sun, similar
patterns are observed in the poleward branch of the torsional oscillations, and
these may represent poleward propagating magnetic fields deep below the solar
surface. [abridged]Comment: 20 pages, 14 figures, emulateapj format; accepted for publication in
ApJ. Expanded and published version of sections 5-6 from
http://arxiv.org/abs/0906.240
The Gramicidin Dimer Shows Both EX1 and EX2 Mechanisms of H/D Exchange
We describe the use of H/D amide exchange and electrospray ionization mass spectrometry to study, in organic solvents, the pentadecapeptide gramicidin as a model for protein self association. In methanol-OD, all active H's in the peptide exchange for D within 5 min, indicating a monomer/dimer equilibrium that is shifted towards the fast-exchanging monomer. H/D exchange in n-propanol-OD, however, showed a partially protected gramicidin that slowly converts to a second species that exchanges nearly all the active hydrogens, indicating EX1 kinetics for the H/D exchange. We propose that this behavior is the result of the slower rate of unfolding in n-propanol compared with that in methanol. The rate constant for the unfolding of the dimer is the rate of disappearance of the partially protected species, and it agrees within a factor of two with a value reported in literature. The rate constant of dimer refolding can be determined from the ratio of the rate constant for unfolding and the affinity constant for the dimer, which we determined in an earlier study. The unfolding activation energy is 20 kcal molâ1, determined by performing the exchange experiments as a function of temperature. To study gramicidin in an even more hydrophobic medium than n-propanol, we measured its H/D exchange kinetics in a phospholipids vesicle and found a different H/D amide exchange behavior. Gramicidin is an unusual peptide dimer that can exhibit both EX1 and EX2 mechanisms for its H/D exchange, depending on the solvent
Searching for overturning convection in penumbral filaments: slit spectroscopy at 0.2 arcsec resolution
Recent numerical simulations of sunspots suggest that overturning convection
is responsible for the existence of penumbral filaments and the Evershed flow,
but there is little observational evidence of this process. Here we carry out a
spectroscopic search for small-scale convective motions in the penumbra of a
sunspot located 5 deg away from the disk center. The position of the spot is
very favorable for the detection of overturning downflows at the edges of
penumbral filaments. Our analysis is based on measurements of the Fe I 709.0 nm
line taken with the Littrow spectrograph of the Swedish 1 m Solar Telescope
under excellent seeing conditions. We compute line bisectors at different
intensity levels and derive Doppler velocities from them. The velocities are
calibrated using a nearby telluric line, with systematic errors smaller than
150 m/s. Deep in the photosphere, as sampled by the bisectors at the 80%-88%
intensity levels, we always observe blueshifts or zero velocities. The maximum
blueshifts reach 1.2 km/s and tend to be cospatial with bright penumbral
filaments. In the line core we detect blueshifts for the most part, with small
velocities not exceeding 300 m/s. Redshifts also occur, but at the level of
100-150 m/s, and only occasionally. The fact that they are visible in high
layers casts doubts on their convective origin. Overall, we do not find
indications of downflows that could be associated with overturning convection
at our detection limit of 150 m/s. Either no downflows exist, or we have been
unable to observe them because they occur beneath tau=1 or the spatial
resolution/height resolution of the measurements is still insufficient.Comment: Accepted for publication in Ap
ProMoT : Modular Modeling for Systems Biology
Summary: PROMOT is a software designed to support efïŹcient and comprehensible modeling, visualization and analysis of complex and large-scale models. In recent years it has been improved in many aspects. New functionality especially tailored for Systems Biology has been added. It is now a very convenient tool for modular modeling. Availability: PROMOT is an open source project and freely available at http://www.mpi-magdeburg.mpg.de/projects/promot/download.html
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