Optimizing Reserve Expansion For Disjunct Populations Of San Joaquin Kit Fox

Expanding habitat protection is a common strategy for species conservation. We present a model to optimize the expansion of reserves for disjunct populations of an endangered species. The objective is to maximize the expected number of surviving populations subject to budget and habitat constraints. The model accounts for benefits of reserve expansion in terms of likelihood of persistence of each population and monetary cost. Solving the model with incrementally higher budgets helps prioritize sites for expansion and produces a cost curve showing funds required for incremental increases in the objective. We applied the model to the problem of allocating funds among eight reserves for the endangered San Joaquin kit fox (Vulpes macrotis mutica) in California, USA. The priorities for reserve expansion were related to land cost and amount of already-protected habitat at each site. Western Kern and Ciervo-Panoche sites received highest priority because land costs were low and moderate amounts of already-protected habitat resulted in large reductions in extinction risk for small increments of habitat protection. The sensitivity analysis focused on the impacts of kit fox reproductive success and home range in non-native grassland sites. If grassland habitat is lower quality than brushland habitat resulting in higher annual variation in reproductive success or larger home ranges, then protecting habitat at the best grassland site (Ciervo-Panoche) is not cost–efficient relative to shrubland sites (Western Kern, Antelope Plain, Carrizo Plain). Finally, results suggested that lowest priority should be given to three relatively high-cost grassland sites (Camp Roberts, Contra Costa, and Western Madera) because protecting habitat at those sites would be expensive and have little effect on the expected number of surviving kit fox populations

Whole genome sequencing of California condors is now utilized for guiding genetic management

The California condor is a critically endangered avian species that, in 1982, became extinct in the wild. Its survival has persevered through a captive breeding program and reintroduction efforts within its former range. As of April, 2015, 421 California condors, including 204 flying in the wild constituted the extant population. Concern regarding preservation of genetic diversity and inbreeding, have led to intensive population management supported by molecular genetics research and, more recently, the application of genomic methodologies. 36 complete California condor genomes, representing the whole gene pool of the species, have been sequenced identifying about 4 millions polymorphic sites (SNPs). This has allowed reassessment of kinship among the founder birds, which is now being applied to selecting breeding pairs for the ongoing captive propagation effort. A genetic disease, chondrodystrophy, is inherited consistent with an autosomal recessive mode of transmission in condors. Utilizing whole genome sequencing of affected chicks and their carrier parents, a series of linked markers localized in a 1 Mb region of the condor genome have been employed to detect carrier condors heterozygous for the lethal mutation. This information can be incorporated into population management to reduce the risk of reproductive failure, as reintroduced populations begin to expand

Supporting California condor conservation management through analysis of species-wide whole genome sequence variation

The critically endangered California condor (Gymnogyps californianus) has been the focus of intensive conservation efforts for several decades. Reduced to a population size of twenty-three birds in 1985, the entire surviving population was brought under captive management for recovery. Founded by fourteen individuals, the surviving California condor gene pool has been managed through captive breeding of individuals paired through pedigree analysis. As of August, 2013, there were 424 California condor individuals; 223 are flying in the wild in four re-introduced populations in California, Arizona and Baja California, Mexico. All condors have their sex identified via amplification of sex chromosome specific markers and DNA samples are stored for every individual of the species. Microsatellite genotyping has confirmed parentage in captive and wild condor chicks, corrected switched identities, and identified successful extra-pair copulation in the wild population. Whole genome sequencing using data generated on multiple platforms has been used to produce a de novo genome assembly for a founder male condor and thirty additional condors that together encompass the entire genetic variation of the species, perhaps the first time such a comprehensive effort has been conducted for any species. Studbook-based kinship relationships between founder birds and kinship estimates from genome-wide genetic variation can be compared and evaluated in the context of retention of genetic diversity in the generations of California condors. Genomic studies of California condors are providing a model system for avian conservation genomics and allow empirical evaluation of basic facets of transmission genetics, including segregation, linkage, recombination and mutation

Ecological Change on California’s Channel Islands from the Pleistocene to the Anthropocene

Historical ecology is becoming an important focus in conservation biology and offers a promising tool to help guide ecosystem management. Here, we integrate data from multiple disciplines to illuminate the past, present, and future of biodiversity on California’s Channel Islands, an archipelago that has undergone a wide range of land-use and ecological changes. Our analysis spans approximately 20,000 years, from before human occupation and through Native American hunter–gatherers, commercial ranchers and fishers, the US military, and other land managers. We demonstrate how long-term, interdisciplinary research provides insight into conservation decisions, such as setting ecosystem restoration goals, preserving rare and endemic taxa, and reducing the impacts of climate change on natural and cultural resources. We illustrate the importance of historical perspectives for understanding modern patterns and ecological change and present an approach that can be applied generally in conservation management planning.Keywords: novel ecosystems, historical ecology, restoration, conservatio

A pragmatic approach for integrating molecular tools into biodiversity conservation

DATA AVAILABILITY STATEMENT : The data availability statement does not apply for this article.SUPPLEMENTARY MATERIAL : TABLE S1. Case studies in which genetic data are being used to inform conservation.Molecular tools are increasingly applied for assessing and monitoring biodiversity and informing conservation action. While recent developments in genetic and genomic methods provide greater sensitivity in analysis and the capacity to address new questions, they are not equally available to all practitioners: There is considerable bias across institutions and countries in access to technologies, funding, and training. Consequently, in many cases, more accessible traditional genetic data (e.g., microsatellites) are still utilized for making conservation decisions. Conservation approaches need to be pragmatic by tackling clearly defined management questions and using the most appropriate methods available, while maximizing the use of limited resources. Here we present some key questions to consider when applying the molecular toolbox for accessible and actionable conservation management. Finally, we highlight a number of important steps to be addressed in a collaborative way, which can facilitate the broad integration of molecular data into conservation.Open Access funding enabled and organized by Projekt DEAL.http://wileyonlinelibrary.com/journal/csp2hj2024BiochemistryGeneticsMicrobiology and Plant PathologySDG-15:Life on lan

A pragmatic approach for integrating molecular tools into biodiversity conservation

Molecular tools are increasingly applied for assessing and monitoring biodiversity and informing conservation action. While recent developments in genetic and genomic methods provide greater sensitivity in analysis and the capacity to address new questions, they are not equally available to all practitioners: There is considerable bias across institutions and countries in access to technologies, funding, and training. Consequently, in many cases, more accessible traditional genetic data (e.g., microsatellites) are still utilized for making conservation decisions. Conservation approaches need to be pragmatic by tackling clearly defined management questions and using the most appropriate methods available, while maximizing the use of limited resources. Here we present some key questions to consider when applying the molecular toolbox for accessible and actionable conservation management. Finally, we highlight a number of important steps to be addressed in a collaborative way, which can facilitate the broad integration of molecular data into conservation

Sperm competition in grey whales

SIR-Your legend for the drawing of grey whales taken from Cyall Watson\u27s book Whales of the World, perpetuates the myth that a \u27helper\u27 male is necessary for successful mating in this species. The legend states that: Only one male is involved in the actual mating; the other takes an upright position on the far side of the female, acting as a prop or wedge . This description of grey whale mating behavior. paraphrased from Watson\u27s book, can he traced to Samaras

Protected Species – Research Permits and the Value of Basic Research

The complexities involved in obtaining permits for field research using protected species continue to increase. In October 1988, Congress amended the Marine Mammal Protection Act (MMPA) to increase the documentation required to obtain a scientific research permit (PL 100-711). Applicants for scientific research permits must now submit “information indicating that the taking is required to further a bona fide scientific purpose and does not involve unnecessary duplication of research.