Genome variation and molecular epidemiology of Salmonella enterica serovar Typhimurium pathovariants

Salmonella enterica serovar Typhimurium is one of approximately 2,500 distinct serovars of the genus Salmonella but is exceptional in its wide distribution in the environment, livestock, and wild animals. S. Typhimurium causes a large proportion of nontyphoidal Salmonella (NTS) infections, accounting for a quarter of infections, second only to S. enterica serovar Enteritidis in incidence. S. Typhimurium was once considered the archetypal broad-host-range Salmonella serovar due to its wide distribution in livestock and wild animals, and much of what we know of the interaction of Salmonella with the host comes from research using a small number of laboratory strains of the serovar (LT2, SL1344, and ATCC 14028). But it has become clear that these strains do not reflect the genotypic or phenotypic diversity of S. Typhimurium. Here, we review the epidemiological record of S. Typhimurium and studies of the host-pathogen interactions of diverse strains of S. Typhimurium. We present the concept of distinct pathovariants of S. Typhimurium that exhibit diversity of host range, distribution in the environment, pathogenicity, and risk to food safety. We review recent evidence from whole-genome sequencing that has revealed the extent of genomic diversity of S. Typhimurium pathovariants, the genomic basis of differences in the level of risk to human and animal health, and the molecular epidemiology of prominent strains. An improved understanding of the impact of genome variation of bacterial pathogens on pathogen-host and pathogen-environment interactions has the potential to improve quantitative risk assessment and reveal how new pathogens evolve

The biological base of Salmonella phage typing

The complexity of Salmonella transmission routes and the observation that Salmonella serovars diversify during evolution have led to the development of special methods for strain discrimination. Phage typing systems of Salmonella have been developed since the 30s (Marcuse, 1934), and still they are very helpful tools for epidemiological work (Rabsch, 1996). Nevertheless, their biological basis is not well understood. We have studied the Anderson typing system (1959) which has a long tradition, to answer the following questions: • To which extent do host controlled modification/ restriction systems interfere? • What is the significance of different phage receptor sites for typing? • How important are prophage controlled super-infection exclusion systems

Prevalence and molecular-basis of fluoroquinolone resistance of Salmonella enterica subsp. enterica field isolates

Nowadays fluoroquinolones are used in human and veterinary medicine. In the last decade Salmonella isolates with reduced susceptibility to quinolones have been isolated with increasing prevalence. Among these isolates high-level resistant strains were detected. The present study aimed at investigating Salmonella field isolates (n=56) with reduced quinolone susceptibility with respect to comparative susceptibilities to various fluoroquinolones used in human and veterinary medicine and the genetic basis of quinolone resistance

Differences in the outer membrane protein pattern of Salmonella typhimurium DT8, DT10 and DT104 strains

The most practicable methods for epidemiological classification of S. Typhimurium are serotyping (determination of serovar) and phage typing in order to disclose their infection routes

Ecological and physiological aspects of some coralline algae from the Western Baltic : calcium uptake and skeleton formation in Phymatolithon calcareum

A coralline alga from the Baltic (Belt Sea, Samsö) belonging to the genus Phymatolithon has been investigated. The mineral skeleton consists of magnesium calcite and shows the following composition (expressed in percent of the dry weight): 94-96% skeletal carbonates, 4-6% organic matter, 32.1-33.4% Ca, 3.3-3.5% Mg and 0.15-0.17% Sr. MgC03 determined by the peak shift method (X-ray diffraction) is in the region of 10-11 mol % . The kinetics of 45Ca uptake consist of a fast step and a low step. The fast step is due to equilibration of isotope with the soft tissues and spaces between cells. The slow step is attributed to net deposition of calcium in the skeleton. From the rate constant of the slow step calcium net deposition was found to be 5.6 1 μg Ca/g dry weight/h or 14 μg CaC03/g dry weight/h. Pulse chase experiments show that the calcification is the resultant of calcium exchange between the alga and the seawater. Light-dark calcification ratios are in the range of 1.1-1.3. The O2 production amounts to 0.04 mg 02/g dry weight/h at an irradiance of 0.085 KW/m2. When expressed per unit weight of total organic matter, this assimilation rate would fall into the range commonly found for other noncalcifying Rhodophyta. The results form the basis for further work on calcification mechanism and CaC03 production in coralline algae

IroN, a Novel Outer Membrane Siderophore Receptor Characteristic of Salmonella enterica

Speciation in enterobacteria involved horizontal gene transfer. Therefore, analysis of genes acquired by horizontal transfer that are present in one species but not its close relatives is expected to give insights into how new bacterial species were formed. In this study we characterize iroN, a gene located downstream of the iroBC operon in the iroA locus of Salmonella enterica serotype Typhi. Like iroBC, the iroN gene is present in all phylogenetic lineages of S. enterica but is absent from closely related species such as Salmonella bongori or Escherichia coli. Comparison of the deduced amino acid sequence of iroN with other proteins suggested that this gene encodes an outer membrane siderophore receptor protein. Mutational analysis in S. enterica and expression in E. coli identified a 78-kDa outer membrane protein as the iroN gene product. When introduced into an E. coli fepA cir fiu aroB mutant on a cosmid, iroN mediated utilization of structurally related catecholate siderophores, including N-(2,3-dihydroxybenzoyl)-l-serine, myxochelin A, benzaldehyde-2,3-dihydroxybenzhydrazone, 2-N,6-N-bis(2,3-dihydroxybenzoyl)-l-lysine, 2-N,6-N-bis(2,3-dihydroxybenzoyl)-l-lysine amide, and enterochelin. These results suggest that the iroA locus functions in iron acquisition in S. enterica

Investigation of the reaction kinetics of photocatalytic pollutant degradation under defined conditions with inkjet-printed TiO2_{2} films – from batch to a novel continuous-flow microreactor

Pollutants accumulating in natural and drinking water systems can cause severe effects to the environment and living organisms. Photocatalysis is a promising option to degrade such pollutants. When immobilizing the photocatalyst, additional catalyst separation steps can be avoided. Among various reactor types, the use of microreactors in photocatalysis has proven advantageous regarding process intensification. However, so far the local conditions are not well understood and described in literature and there is little quantitative understanding of the relevant phenomena. In this work, inkjet-printing was used to immobilize TiO$_{2}$ as a thin film with a precisely tuneable thickness and catalyst loading. In a batch reactor, the degradation of rhodamine B (RhB) as a model pollutant was performed for different initial concentrations and catalyst layer thicknesses. By employing the Langmuir–Hinshelwood model and a light irradiation model, the kinetic parameters were determined. The influence of the light intensity at different positions inside the immobilized photocatalyst on the reaction kinetics is quantified. RhB degradation was tested under defined operational conditions using an in-house developed continuous-flow microreactor with advanced fiber optics for precise light introduction. The models derived from batch experiments were used to simulate the degradation in the continuous-flow microreactor. Results show that the simulation allows prediction of the performance with less than 20% deviation to the experimental data. An analysis of mass transport effects on the reaction rate indicates that external mass transfer is a limiting factor in the microreactor experiment. This study further demonstrates the potential of the new reactor system (microreactor, fiber optics and printed catalyst) for detailed investigations on photocatalytic reaction kinetics

Investigation of the reaction kinetics of photocatalytic pollutant degradation under defined conditions with inkjet-printed TiO2_{2} films – from batch to a novel continuous-flow microreactor

Pollutants accumulating in natural and drinking water systems can cause severe effects to the environment and living organisms. Photocatalysis is a promising option to degrade such pollutants. When immobilizing the photocatalyst, additional catalyst separation steps can be avoided. Among various reactor types, the use of microreactors in photocatalysis has proven advantageous regarding process intensification. However, so far the local conditions are not well understood and described in literature and there is little quantitative understanding of the relevant phenomena. In this work, inkjet-printing was used to immobilize TiO$_{2}$ as a thin film with a precisely tuneable thickness and catalyst loading. In a batch reactor, the degradation of rhodamine B (RhB) as a model pollutant was performed for different initial concentrations and catalyst layer thicknesses. By employing the Langmuir–Hinshelwood model and a light irradiation model, the kinetic parameters were determined. The influence of the light intensity at different positions inside the immobilized photocatalyst on the reaction kinetics is quantified. RhB degradation was tested under defined operational conditions using an in-house developed continuous-flow microreactor with advanced fiber optics for precise light introduction. The models derived from batch experiments were used to simulate the degradation in the continuous-flow microreactor. Results show that the simulation allows prediction of the performance with less than 20% deviation to the experimental data. An analysis of mass transport effects on the reaction rate indicates that external mass transfer is a limiting factor in the microreactor experiment. This study further demonstrates the potential of the new reactor system (microreactor, fiber optics and printed catalyst) for detailed investigations on photocatalytic reaction kinetics