Carbon-fiber tips for scanning probe microscopes and molecular electronics experiments

We fabricate and characterize carbon-fiber tips for their use in combined scanning tunneling and force microscopy based on piezoelectric quartz tuning fork force sensors. An electrochemical fabrication procedure to etch the tips is used to yield reproducible sub-100-nm apex. We also study electron transport through single-molecule junctions formed by a single octanethiol molecule bonded by the thiol anchoring group to a gold electrode and linked to a carbon tip by the methyl group. We observe the presence of conductance plateaus during the stretching of the molecular bridge, which is the signature of the formation of a molecular junction.Comment: Conference Proceeding (Trends in NanoTechnology 2011, Tenerife SPAIN); Nanoscale Research Letters, (2012) 7:25

What do patients complain about online: A systematic review and taxonomy framework based on patient centeredness

© 2019 Journal of Medical Internet Research. All rights reserved. Background: Complaints made online by patients about their health care experiences are becoming prevalent because of widespread worldwide internet connectivity. An a priori framework, based on patient centeredness, may be useful in identifying the types of issues patients complain about online across multiple settings. It may also assist in examining whether the determinants of patient-centered care (PCC) mirror the determinants of patient experiences. Objective: The objective of our study was to develop a taxonomy framework for patient complaints online based on patient centeredness and to examine whether the determinants of PCC mirror the determinants of patient experiences. Methods: First, the best fit framework synthesis technique was applied to develop the proposed a priori framework. Second, electronic databases, including Web of Science, Scopus, and PubMed, were searched for articles published between 2000 and June 2018. Studies were only included if they collected primary quantitative data on patients' online complaints. Third, a deductive and inductive thematic analysis approach was adopted to code the themes of recognized complaints into the framework. Results: In total, 17 studies from 5 countries were included in this study. Patient complaint online taxonomies and theme terms varied. According to our framework, patients expressed most dissatisfaction with patient-centered processes (101,586/204,363, 49.71%), followed by prerequisites (appropriate skills and knowledge of physicians; 50,563, 24.74%) and the care environment (48,563/204,363, 23.76%). The least dissatisfied theme was expected outcomes (3651/204,363, 1.79%). People expressed little dissatisfaction with expanded PCC dimensions, such as involvement of family and friends (591/204,363, 0.29%). Variation in the concerns across different countries' patients were also observed. Conclusions: Online complaints made by patients are of major value to health care providers, regulatory bodies, and patients themselves. Our PCC framework can be applied to analyze them under a wide range of conditions, treatments, and countries. This review has shown significant heterogeneity of patients' online complaints across different countries

DINE: A Framework for Deep Incomplete Network Embedding

Network representation learning (NRL) plays a vital role in a variety of tasks such as node classification and link prediction. It aims to learn low-dimensional vector representations for nodes based on network structures or node attributes. While embedding techniques on complete networks have been intensively studied, in real-world applications, it is still a challenging task to collect complete networks. To bridge the gap, in this paper, we propose a Deep Incomplete Network Embedding method, namely DINE. Specifically, we first complete the missing part including both nodes and edges in a partially observable network by using the expectation-maximization framework. To improve the embedding performance, we consider both network structures and node attributes to learn node representations. Empirically, we evaluate DINE over three networks on multi-label classification and link prediction tasks. The results demonstrate the superiority of our proposed approach compared against state-of-the-art baselines.Comment: 12 pages, 3 figure

DINE : a framework for deep incomplete network embedding

Network representation learning (NRL) plays a vital role in a variety of tasks such as node classification and link prediction. It aims to learn low-dimensional vector representations for nodes based on network structures or node attributes. While embedding techniques on complete networks have been intensively studied, in real-world applications, it is still a challenging task to collect complete networks. To bridge the gap, in this paper, we propose a Deep Incomplete Network Embedding method, namely DINE. Specifically, we first complete the missing part including both nodes and edges in a partially observable network by using the expectation-maximization framework. To improve the embedding performance, we consider both network structures and node attributes to learn node representations. Empirically, we evaluate DINE over three networks on multi-label classification and link prediction tasks. The results demonstrate the superiority of our proposed approach compared against state-of-the-art baselines. © 2019, Springer Nature Switzerland AG.E

Manipulating infrared photons using plasmons in transparent graphene superlattices

Superlattices are artificial periodic nanostructures which can control the flow of electrons. Their operation typically relies on the periodic modulation of the electric potential in the direction of electron wave propagation. Here we demonstrate transparent graphene superlattices which can manipulate infrared photons utilizing the collective oscillations of carriers, i.e., plasmons of the ensemble of multiple graphene layers. The superlattice is formed by depositing alternating wafer-scale graphene sheets and thin insulating layers, followed by patterning them all together into 3-dimensional photonic-crystal-like structures. We demonstrate experimentally that the collective oscillation of Dirac fermions in such graphene superlattices is unambiguously nonclassical: compared to doping single layer graphene, distributing carriers into multiple graphene layers strongly enhances the plasmonic resonance frequency and magnitude, which is fundamentally different from that in a conventional semiconductor superlattice. This property allows us to construct widely tunable far-infrared notch filters with 8.2 dB rejection ratio and terahertz linear polarizers with 9.5 dB extinction ratio, using a superlattice with merely five graphene atomic layers. Moreover, an unpatterned superlattice shields up to 97.5% of the electromagnetic radiations below 1.2 terahertz. This demonstration also opens an avenue for the realization of other transparent mid- and far-infrared photonic devices such as detectors, modulators, and 3-dimensional meta-material systems.Comment: under revie

Advances on Network Protocols and Algorithms for Vehicular Ad Hoc Networks

Vehicular Ad Hoc Network (VANET) is an emerging area of wireless ad hoc networks that facilitates ubiquitous connectivity between smart vehicles through Vehicle-to-Vehicle (V2V) or Vehicle-to-Roadside (V2R) and Roadside-to- Vehicle (R2V) communications. This emerging field of technology aims to improve safety of passengers and traffic flow, reduces pollution to the environment and enables in-vehicle entertainment applications. The safety-related applications could reduce accidents by providing drivers with traffic information such as collision avoidances, traffic flow alarms and road surface conditions. Moreover, the passengers could exploit an available infrastructure in order to connect to the internet for infomobility and entertainment applications.Lloret, J.; Ghafoor, KZ.; Rawat, DB.; Xia, F. (2013). Advances on Network Protocols and Algorithms for Vehicular Ad Hoc Networks. Mobile Networks and Applications. 18(6):749-754. doi:10.1007/s11036-013-0490-7S749754186Lloret J, Canovas A, Catalá A, Garcia M (2013) Group-based protocol and mobility model for VANETs to offer internet access. J Netw Comput Appl 36(3):1027–1038. doi: 10.1016/j.jnca.2012.02.009Khokhar RH, Zia T, Ghafoor KZ, Lloret J, Shiraz M (2013) Realistic and efficient radio propagation model for V2X communications. KSII Trans Internet Inform Syst 7(8):1933–1953. doi: 10.3837/tiis.2013.08.011Ghafoor KZ (2013) Routing protocols in vehicular ad hoc networks: survey and research challenges, Netw Protocol Algorithm 5(4). doi: 10.5296/npa.v5i4.4134Ghafoor KZ, Bakar KA, Lloret J, Ke C-H, Lee KC (2013) Intelligent beaconless geographical routing for urban vehicular environments. Wirel Netw 19(3):345–362. doi: 10.1007/s11276-012-0470-zGhafoor KZ, Bakar KA, Lee K, AL-Hashimi H (2010) A novel delay- and reliability- aware inter-vehicle routing protocol. Netw Protocol Algorithms 2(2):66–88. doi: 10.5296/npa.v2i2.427Dias JAFF, Rodrigues JJPC, Isento JN, Pereira PRBA, Lloret J (2011) Performance assessment of fragmentation mechanisms for vehicular delay-tolerant networks. EURASIP J Wirel Commun Netw 2011(195):1–14. doi: 10.1186/1687-1499-2011-195Zhang D, Yang Z, Raychoudhury V, Chen Z, Lloret J (2013) An energy-efficient routing protocol using movement trend in vehicular Ad-hoc networks. Comput J 58(8):938–946. doi: 10.1093/comjnl/bxt028Ghafoor KZ, Lloret J, Bakar KA, Sadiq AS, Mussa SAB (2013) Beaconing approaches in vehicular Ad Hoc networks: a survey. Wirel Pers Commun. doi: 10.1007/s11277-013-1222-9Sadiq AS, Bakar KA, Ghafoor KZ, Lloret J (2013) An intelligent vertical handover scheme for audio and video streaming in heterogeneous vehicular networks. Mobile Netw Appl. doi: 10.1007/s11036-013-0465-8Khamayseh YM (2013) Network size estimation in VANETs. Netw Protocol Algorithm 5(3):136–152. doi: 10.5296/npa.v5i6.3838Rawat DB, Popescu DC, Yan G, Olariu S (2011) Enhancing VANET performance by joint adaptation of transmission power and contention window size. IEEE Trans Parallel Distrib Syst 22(9):1528–1535Yan G, Rawat DB, Bista BB. Provisioning vehicular ad hoc networks with quality of services. Int J Space-Based Situated Comput 2(2):104–111Rawat DB, Bista BB, Yan G, Weigle MC (2011) Securing vehicular ad-hoc networks against malicious drivers: a probabilistic approach, International Conference on Complex, Intelligent, and Software Intensive Systems Pp. 146–151. June 30, 2011Sun W, Xia F, Ma J, Fu T, Sun Y. An optimal ODAM-based broadcast algorithm for vehicular Ad-Hoc Networks. KSII Trans Internet Inform Syst 6(12): 3257–3274Vinel AV, Dudin AN, Andreev SD, Xia F (2010) Performance modeling methodology of emergency dissemination algorithms for vehicular ad-hoc networks, 6th Communication Systems, Networks & Digital Signal Processing (CSNDSP 2010), Pp. 397–400AL-Hashimi HN, Bakar KA, Ghafoor KZ (2010) Inter-domain proxy mobile IPv6 based vehicular network. Netw Protocol Algorithm 2(4):1–15. doi: 10.5296/npa.v2i4.488Ghafoor KZ, Bakar KA, Mohammed MA, Lloret J (2013) Vehicular cloud computing: trends and challenges, in the book “mobile computing over cloud: technologies, services, and applications”. IGI GlobalYan G, Rawat DB, Bista BB (2012) Towards secure vehicular clouds, Sixth International Conference on Complex, Intelligent and Software Intensive Systems (CISIS 2012), Pp. 370–375Fernández H, Rubio L, Reig J, Rodrigo-Peñarrocha VM, Valero A (2013) Path loss modeling for vehicular system performance and communication protocols evaluation. Mobile Netw Appl. doi: 10.1007/s11036-013-0463-xAllouche Y, Segal M (2013) A cluster-based beaconing approach in VANETs: near optimal topology via proximity information. Mobile Netw Appl. doi: 10.1007/s11036-013-0468-5Merah AF, Samarah S, Boukerche A, Mammeri A (2013) A sequential patterns data mining approach towards vehicular route prediction in VANETs. Mobile Netw Appl. doi: 10.1007/s11036-013-0459-6Zhang D, Huang H, Zhou J, Xia F, Chen Z (2013) Detecting hot road mobility of vehicular Ad Hoc Networks. Mobile Netw Appl. doi: 10.1007/s11036-013-0467-6El Ajaltouni H, Boukerche A, Mammeri A (2013) A multichannel QoS MAC with dynamic transmit opportunity for. Mobile Netw Appl. doi: 10.1007/s11036-013-0475-6Reñé S, Esparza O, Alins J, Mata-Díaz J, Muñoz JL (2013) VSPLIT: a cross-layer architecture for V2I TCP services over. Mobile Netw Appl. doi: 10.1007/s11036-013-0473-8Blanco B, Liberal F (2013) Amaia Aguirregoitia, application of cognitive techniques to adaptive routing for VANETs in city environments. Mobile Netw Appl. doi: 10.1007/s11036-013-0466-7Kim J, Krunz M (2013) Spectrum-aware beaconless geographical routing protocol for cognitive radio enabled vehicular networks. Mobile Netw Appl. doi: 10.1007/s11036-013-0476-5Dias JAFF, Rodrigues JJPC, Isento JNG, Niu J (2013) The impact of cooperative nodes on the performance of vehicular delay-tolerant networks. Mobile Netw Appl. doi: 10.1007/s11036-013-0464-9Sadiq AS, Bakar KA, Ghafoor KZ, Lloret J, Khokhar R (2013) An intelligent vertical handover scheme for audio and video streaming in heterogeneous vehicular networks. Mobile Netw Appl. doi: 10.1007/s11036-013-0465-8Machado S, Ozón J, González AJ, Ghafoor KZ (2013) Structured peer-to-peer real time video transmission over vehicular Ad Hoc networks. Mobile Netw Appl. doi: 10.1007/s11036-013-0461-zLin C, Wu G, Xia F, Yao L (2013) Enhance the attacking efficiency of the node compromise attack in vehicular Ad-hoc network using connected dominating set. Mobile Netw Appl. doi: 10.1007/s11036-013-0469-

Selective Targeting of Tumorigenic Cancer Cell Lines by Microtubule Inhibitors

For anticancer drug therapy, it is critical to kill those cells with highest tumorigenic potential, even when they comprise a relatively small fraction of the overall tumor cell population. We have used the established NCI/DTP 60 cell line growth inhibition assay as a platform for exploring the relationship between chemical structure and growth inhibition in both tumorigenic and non-tumorigenic cancer cell lines. Using experimental measurements of “take rate” in ectopic implants as a proxy for tumorigenic potential, we identified eight chemical agents that appear to strongly and selectively inhibit the growth of the most tumorigenic cell lines. Biochemical assay data and structure-activity relationships indicate that these compounds act by inhibiting tubulin polymerization. Yet, their activity against tumorigenic cell lines is more selective than that of the other microtubule inhibitors in clinical use. Biochemical differences in the tubulin subunits that make up microtubules, or differences in the function of microtubules in mitotic spindle assembly or cell division may be associated with the selectivity of these compounds

Fractional quantum Hall effect in a quantum point contact at filling fraction 5/2

Recent theories suggest that the excitations of certain quantum Hall states may have exotic braiding statistics which could be used to build topological quantum gates. This has prompted an experimental push to study such states using confined geometries where the statistics can be tested. We study the transport properties of quantum point contacts (QPCs) fabricated on a GaAs/AlGaAs two dimensional electron gas that exhibits well-developed fractional quantum Hall effect, including at bulk filling fraction 5/2. We find that a plateau at effective QPC filling factor 5/2 is identifiable in point contacts with lithographic widths of 1.2 microns and 0.8 microns, but not 0.5 microns. We study the temperature and dc-current-bias dependence of the 5/2 plateau in the QPC, as well as neighboring fractional and integer plateaus in the QPC while keeping the bulk at filling factor 3. Transport near QPC filling factor 5/2 is consistent with a picture of chiral Luttinger liquid edge-states with inter-edge tunneling, suggesting that an incompressible state at 5/2 forms in this confined geometry

Identification of the initial molecular changes in response to circulating angiogenic cells-mediated therapy in critical limb ischemia

BackgroundCritical limb ischemia (CLI) constitutes the most aggressive form of peripheral arterial occlusive disease, characterized by the blockade of arteries supplying blood to the lower extremities, significantly diminishing oxygen and nutrient supply. CLI patients usually undergo amputation of fingers, feet, or extremities, with a high risk of mortality due to associated comorbidities.Circulating angiogenic cells (CACs), also known as early endothelial progenitor cells, constitute promising candidates for cell therapy in CLI due to their assigned vascular regenerative properties. Preclinical and clinical assays with CACs have shown promising results. A better understanding of how these cells participate in vascular regeneration would significantly help to potentiate their role in revascularization.Herein, we analyzed the initial molecular mechanisms triggered by human CACs after being administered to a murine model of CLI, in order to understand how these cells promote angiogenesis within the ischemic tissues.MethodsBalb-c nude mice (n:24) were distributed in four different groups: healthy controls (C, n:4), shams (SH, n:4), and ischemic mice (after femoral ligation) that received either 50 mu l physiological serum (SC, n:8) or 5x10(5) human CACs (SE, n:8). Ischemic mice were sacrificed on days 2 and 4 (n:4/group/day), and immunohistochemistry assays and qPCR amplification of Alu-human-specific sequences were carried out for cell detection and vascular density measurements. Additionally, a label-free MS-based quantitative approach was performed to identify protein changes related.ResultsAdministration of CACs induced in the ischemic tissues an increase in the number of blood vessels as well as the diameter size compared to ischemic, non-treated mice, although the number of CACs decreased within time. The initial protein changes taking place in response to ischemia and more importantly, right after administration of CACs to CLI mice, are shown.ConclusionsOur results indicate that CACs migrate to the injured area; moreover, they trigger protein changes correlated with cell migration, cell death, angiogenesis, and arteriogenesis in the host. These changes indicate that CACs promote from the beginning an increase in the number of vessels as well as the development of an appropriate vascular network.Institute of Health Carlos III, ISCIII; Junta de Andaluci