412 research outputs found
Comparison of bulk milk antibody and youngstock serology screens for determining herd status for Bovine Viral Diarrhoea Virus
BACKGROUND: This paper examines the use of Bulk Milk antibody (BM Ab), Youngstock (YS) serology (Check Tests) and Bulk Milk PCR (BM PCR) for determining the presence or absence of animals persistently infected (PI) with Bovine Viral Diarrhoea Virus (BVDV) within a herd. Data is presented from 26 herds where average herd sizes were 343 and 98 animals for dairy and beef units respectively. Seventeen herds had sufficient data to analyse using Receiver Operating Characteristic (ROC) and probability curves enabling calculation of the sensitivity and specificity of BM Ab and YS Check tests for determining the presence of PI animals within herds in this dataset. RESULTS: Using BM Ab to screen a herd for the presence of PI animals, achieved a herd level sensitivity and specificity of 80.00 % (44.39–97.48 %) and 85.71 % (42.13–99.64 %) respectively (95 % confidence intervals quoted). Sensitivity and specificity of YS Check Tests at a cut off of 3/10 Ab positive YS were 81.82 % (48.22–97.72 %) and 66.67 % (22.28–95.67 %) respectively (95 % confidence interval). These results were achieved by comparing the screening tests to whole herd PI searches that took place 1–19 months after the initial screen with a mean interval of 8 months. Removal of this delay by taking BM samples on the day of a whole herd test and simulating a YS Check Test from the herd test data produced improvements in the reliability of the Check Tests. BM Ab sensitivity and specificity remained unchanged. However, the Check Test sensitivity and specificity improved to 90.9 % (58.72–99.77 %) and 100 % (54.07–100 %) respectively (95 % confidence interval) at a cut of off 2.5/10 Ab positive animals. Our limited BM PCR results identified 5/23 dairy farms with a positive BM PCR result; two contained milking PIs, two had non-milking PIs and another had no PIs identified. CONCLUSIONS: Delaying a PI search following an initial herd screen decreased the diagnostic accuracy and relevance of our results. With careful interpretation, longitudinal surveillance using a combination of the techniques discussed can successfully determine farm status and therefore allow changes in BVDV status to be detected early, thus enabling prompt action in the event of a BVDV incursion
The SEGUE Stellar Parameter Pipeline. I. Description and Initial Validation Tests
We describe the development and implementation of the SEGUE (Sloan Extension
for Galactic Exploration and Understanding) Stellar Parameter Pipeline (SSPP).
The SSPP derives, using multiple techniques, radial velocities and the
fundamental stellar atmospheric parameters (effective temperature, surface
gravity, and metallicity) for AFGK-type stars, based on medium-resolution
spectroscopy and photometry obtained during the course of the original
Sloan Digital Sky Survey (SDSS-I) and its Galactic extension (SDSS-II/SEGUE).
The SSPP also provides spectral classification for a much wider range of stars,
including stars with temperatures outside of the window where atmospheric
parameters can be estimated with the current approaches. This is Paper I in a
series of papers on the SSPP; it provides an overview of the SSPP, and initial
tests of its performance using multiple data sets. Random and systematic errors
are critically examined for the current version of the SSPP, which has been
used for the sixth public data release of the SDSS (DR-6).Comment: 64 pages, 8 tables, 12 figures, submitted to the Astronomical Journa
The SEGUE Stellar Parameter Pipeline. II. Validation with Galactic Globular and Open Clusters
We validate the performance and accuracy of the current SEGUE (Sloan
Extension for Galactic Understanding and Exploration) Stellar Parameter
Pipeline (SSPP), which determines stellar atmospheric parameters (effective
temperature, surface gravity, and metallicity) by comparing derived overall
metallicities and radial velocities from selected likely members of three
globular clusters (M 13, M 15, and M 2) and two open clusters (NGC 2420 and M
67) to the literature values. Spectroscopic and photometric data obtained
during the course of the original Sloan Digital Sky Survey (SDSS-I) and its
first extension (SDSS-II/SEGUE) are used to determine stellar radial velocities
and atmospheric parameter estimates for stars in these clusters. Based on the
scatter in the metallicities derived for the members of each cluster, we
quantify the typical uncertainty of the SSPP values, sigma([Fe/H]) = 0.13 dex
for stars in the range of 4500 K < Teff < 7500 K and 2.0 < log g < 5.0, at
least over the metallicity interval spanned by the clusters studied (-2.3 <
[Fe/H] < 0). The surface gravities and effective temperatures derived by the
SSPP are also compared with those estimated from the comparison of the
color-magnitude diagrams with stellar evolution models; we find satisfactory
agreement. At present, the SSPP underestimates [Fe/H] for
near-solar-metallicity stars, represented by members of M 67 in this study, by
about 0.3 dex.Comment: 56 pages, 8 Tables, 15 figures, submitted to the Astronomical Journa
The SEGUE Stellar Parameter Pipeline. III. Comparison with High-Resolution Spectroscopy of SDSS/SEGUE Field Stars
We report high-resolution spectroscopy of 125 field stars previously observed
as part of the Sloan Digital Sky Survey and its program for Galactic studies,
the Sloan Extension for Galactic Understanding and Exploration (SEGUE). These
spectra are used to measure radial velocities and to derive atmospheric
parameters, which we compare with those reported by the SEGUE Stellar Parameter
Pipeline (SSPP). The SSPP obtains estimates of these quantities based on SDSS
ugriz photometry and low-resolution (R = 2000) spectroscopy. For F- and G-type
stars observed with high signal-to-noise ratios (S/N), we empirically determine
the typical random uncertainties in the radial velocities, effective
temperatures, surface gravities, and metallicities delivered by the SSPP to be
2.4 km/s, 130 K (2.2%), 0.21 dex, and 0.11 dex, respectively, with systematic
uncertainties of a similar magnitude in the effective temperatures and
metallicities. We estimate random errors for lower S/N spectra based on
numerical simulations.Comment: 37 pages, 6 tables, 6 figures, submitted to the Astronomical Journa
Two Stellar Components in the Halo of the Milky Way
The halo of the Milky Way provides unique elemental abundance and kinematic
information on the first objects to form in the Universe, which can be used to
tightly constrain models of galaxy formation and evolution. Although the halo
was once considered a single component, evidence for its dichotomy has slowly
emerged in recent years from inspection of small samples of halo objects. Here
we show that the halo is indeed clearly divisible into two broadly overlapping
structural components -- an inner and an outer halo -- that exhibit different
spatial density profiles, stellar orbits and stellar metallicities (abundances
of elements heavier than helium). The inner halo has a modest net prograde
rotation, whereas the outer halo exhibits a net retrograde rotation and a peak
metallicity one-third that of the inner halo. These properties indicate that
the individual halo components probably formed in fundamentally different ways,
through successive dissipational (inner) and dissipationless (outer) mergers
and tidal disruption of proto-Galactic clumps.Comment: Two stand-alone files in manuscript, concatenated together. The first
is for the main paper, the second for supplementary information. The version
is consistent with the version published in Natur
Elliptical Galaxies with Emission Lines from the Sloan Digital Sky Survey
We present the results of 11 elliptical galaxies with strong nebular emission
lines during our study of star formation history along the Hubble sequence.
After removing the dilution from the underlying old stellar populations by use
of stellar population synthesis model, we derive the accurate fluxes of all
emission lines for these objects, which are later classified with emission line
ratios into one Seyfert 2, six LINERs and four HII galaxies. We also identify
one HII galaxy (A1216+04) as a hitherto unknown Wolf-Rayet galaxy from the
presence of the Wolf-Rayet broad bump at 4650 \AA. We propose that the
star-forming activities in elliptical galaxies are triggered by either
galaxy-galaxy interaction or the merging of a small satellite/a massive star
cluster, as already suggested by recent numerical simulations
The Milky Way Tomography with SDSS: III. Stellar Kinematics
We study Milky Way kinematics using a sample of 18.8 million main-sequence
stars with r<20 and proper-motion measurements derived from SDSS and POSS
astrometry, including ~170,000 stars with radial-velocity measurements from the
SDSS spectroscopic survey. Distances to stars are determined using a
photometric parallax relation, covering a distance range from ~100 pc to 10 kpc
over a quarter of the sky at high Galactic latitudes (|b|>20 degrees). We find
that in the region defined by 1 kpc <Z< 5 kpc and 3 kpc <R< 13 kpc, the
rotational velocity for disk stars smoothly decreases, and all three components
of the velocity dispersion increase, with distance from the Galactic plane. In
contrast, the velocity ellipsoid for halo stars is aligned with a spherical
coordinate system and appears to be spatially invariant within the probed
volume. The velocity distribution of nearby ( kpc) K/M stars is complex,
and cannot be described by a standard Schwarzschild ellipsoid. For stars in a
distance-limited subsample of stars (<100 pc), we detect a multimodal velocity
distribution consistent with that seen by HIPPARCOS. This strong
non-Gaussianity significantly affects the measurements of the velocity
ellipsoid tilt and vertex deviation when using the Schwarzschild approximation.
We develop and test a simple descriptive model for the overall kinematic
behavior that captures these features over most of the probed volume, and can
be used to search for substructure in kinematic and metallicity space. We use
this model to predict further improvements in kinematic mapping of the Galaxy
expected from Gaia and LSST.Comment: 90 pages, 26 figures, submitted to Ap
Burkholderia mallei expresses a unique lipopolysaccharide mixture that is a potent activator of human Toll-like receptor 4 complexes
Burkholderia mallei, the aetiologic agent of glanders, causes a variety of illnesses in animals and humans ranging from occult infections to acute fulminating septicaemias. To better understand the role of lipopolysaccharide (LPS) in the pathogenesis of these diseases, studies were initiated to characterize the structural and biological properties of lipid A moieties expressed by this organism. Using a combination of chemical analyses and MALDI-TOF mass spectrometry, B. mallei was shown to express a heterogeneous mixture of tetra- and penta-acylated lipid A species that were non-stoichiometrically substituted with 4-amino-4-deoxy-arabinose residues. The major penta-acylated species consisted of bisphosphorylated d-glucosamine disaccharide backbones possessing two amide linked 3-hydroxyhexadecanoic acids, two ester linked 3-hydroxytetradecanoic acids [C14:0(3-OH)] and an acyloxyacyl linked tetradecanoic acid, whereas, the major tetra-acylated species possessed all but the 3′-linked C14:0(3-OH) residues. In addition, although devoid of hexa-acylated species, B. mallei LPS was shown to be a potent activator of human Toll-like receptor 4 complexes and stimulated human macrophage-like cells (THP-1 and U-937), monocyte-derived macrophages and dendritic cells to produce high levels of TNF-α, IL-6 and RANTES. Based upon these results, it appears that B. mallei LPS is likely to play a significant role in the pathogenesis of human disease
The Milky Way Tomography With SDSS. III. Stellar Kinematics
We study Milky Way kinematics using a sample of 18.8 million main-sequence stars with r 20 degrees). We find that in the region defined by 1 kpc < Z < 5 kpc and 3 kpc < R < 13 kpc, the rotational velocity for disk stars smoothly decreases, and all three components of the velocity dispersion increase, with distance from the Galactic plane. In contrast, the velocity ellipsoid for halo stars is aligned with a spherical coordinate system and appears to be spatially invariant within the probed volume. The velocity distribution of nearby (Z < 1 kpc) K/M stars is complex, and cannot be described by a standard Schwarzschild ellipsoid. For stars in a distance-limited subsample of stars (< 100 pc), we detect a multi-modal velocity distribution consistent with that seen by HIPPARCOS. This strong non-Gaussianity significantly affects the measurements of the velocity-ellipsoid tilt and vertex deviation when using the Schwarzschild approximation. We develop and test a simple descriptive model for the overall kinematic behavior that captures these features over most of the probed volume, and can be used to search for substructure in kinematic and metallicity space. We use this model to predict further improvements in kinematic mapping of the Galaxy expected from Gaia and the Large Synoptic Survey Telescope.NSF AST-615991, AST-0707901, AST-0551161, AST-02-38683, AST-06-07634, AST-0807444, PHY05-51164NASA NAG5-13057, NAG5-13147, NNXO-8AH83GPhysics Frontier Center/Joint Institute for Nuclear Astrophysics (JINA) PHY 08-22648U.S. National Science FoundationMarie Curie Research Training Network ELSA (European Leadership in Space Astrometry) MRTN-CT-2006-033481Fermi Research Alliance, LLC, United States Department of Energy DE-AC02-07CH11359Alfred P. Sloan FoundationParticipating InstitutionsJapanese MonbukagakushoMax Planck SocietyHigher Education Funding Council for EnglandMcDonald Observator
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