The genetic control of avascular area in mouse oxygen-induced retinopathy

Purpose: The C57BL/6ByJ and BALB/cByJ inbred strains of mice are, respectively, susceptible and resistant to oxygen-induced retinopathy (OIR). The purpose of this work was to investigate the genetic control of the retinal avascular area in mouse OIR using a mapping cross. Methods: The central retinal avascular area was measured on postnatal day 16 (P16) in C57BL/6ByJ, BALB/cByJ, 101 (C57BL/6ByJ x BALB/cByJ)F2, and 116 (BALB/cByJ x C57BL/6ByJ)F2 mice that had been subjected to the OIR protocol. A genome-wide scan was performed of selected albino and non-albino mice to determine quantitative trait loci associated with weight and avascular area. Results: C57BL/6ByJ mice had significantly larger avascular areas than BALB/cByJ ones. Albino mice of the F2 generation had smaller avascular areas than the non-albino mice. Genotyping was performed at 856 informative single nucleotide polymorphisms approximately evenly distributed across the genome from each of 85 selected F2 mice. Weight, sex, and the paternal grandmother were found to act as additive covariates associated with the avascular area on P16; mapping analyses that used a model incorporating these covariates found a quantitative trait locus on chromosome 7 related to avascular area. Mapping analyses that used a model that did not incorporate covariates found a quantitative trait locus on chromosome 9 related to avascular area. A quantitative trait locus for bodyweight on P16 was mapped to chromosome 5. Conclusions: The retinal avascular area in the mouse OIR model is under genetic control. Revascularization in OIR is related to the weight, strain of paternal grandmother, sex, and albinism. Our data support the existence of a quantitative trait locus on chromosome 5 that influences weight after exposure to hyperoxia, as well as quantitative trait loci on chromosomes 7 and 9 that modify susceptibility to OIR

Mutual information-based binarisation of multiple images of an object: an application in medical imaging

A new method for image thresholding of two or more images that are acquired in different modalities or acquisition protocols is proposed. The method is based on measures from information theory and has no underlying free parameters nor does it require training or calibration. The method is based on finding an optimal set of global thresholds, one for each image, by maximising the mutual information above the thresholds while minimising the mutual information below the thresholds. Although some assumptions on the nature of images are made, no assumptions are made by the method on the intensity distributions or on the shape of the image histograms. The effectiveness of the method is demonstrated both on synthetic images and medical images from clinical practice. It is then compared against three other thresholding method

Statistical properties of near‐surface flow in the California coastal transition zone

The article of record as published may be found at https://doi.org/10.1029/91JC01072During the summers of 1987 and 1988, 77 near-surface satellite-tracked drifters were deployed in or near cold filaments near Point Arena, California (39°N), and tracked for up to 6 months as part of the Coastal Transition Zone (CTZ) program. The drifters had large drogues centered at 15 m, and the resulting drifter trajectory data set has been analyzed in terms of its Eulerian and Lagrangian statistics. The CTZ drifter results show that the California Current can be characterized in summer and fall as a meandering coherent jet which on average flows southward to at least 30°N, the southern end of the study domain. From 39°N south to about 33°N, the typical core velocities are of O(50 cm s−1) and the current meanders have alongshore wavelengths of O (300 km) and onshore-offshore amplitude of O(100–200 km). The lateral movement of this jet leads to large eddy kinetic energies and large eddy diffusivities, especially north of 36°N. The initial onshore-offshore component of diffusivity is always greater than the alongshore component in the study domain, but at the southern end, the eddy diffusivity is more isotropic, with scalar single particle diffusivity (Kxx + Kyy) of O(8 × 107 cm2 s−1). The eddy diffusivity increases with increasing eddy energy. Finally, a simple volume budget for the 1988 filament observed near 37°N off Point Arena suggests that subduction can occur in a filament at an average rate of O (10 m d−1) some 200 km offshore, thus allowing the cold water initially in the filament core to sink below the warmer ambient water by the time the surface velocity core has turned back onshore. This process explains why satellite temperature and color imagery tend to “see” only flow proceeding offshore

Vortex Plastic Flow, B(x,y,H(t)),M(H(t)),Jc(B(t))B(x,y,H(t)), M(H(t)), J_c(B(t)), Deep in the Bose Glass and Mott-Insulator Regimes

We present simulations of flux-gradient-driven superconducting vortices interacting with strong columnar pinning defects as an external field $H(t)$ is quasi-statically swept from zero through a matching field $B_{\phi}$. We analyze several measurable quantities, including the local flux density $B(x,y,H(t))$, magnetization $M(H(t))$, critical current $J_{c}(B(t))$, and the individual vortex flow paths. We find a significant change in the behavior of these quantities as the local flux density crosses $B_{\phi}$, and quantify it for many microscopic pinning parameters. Further, we find that for a given pin density $J_c(B)$ can be enhanced by maximizing the distance between the pins for $B < B_{\phi}$.Comment: 4 pages, 4 PostScript Figure

Triple oxygen isotopic composition of the high-³He/⁴He mantle

Measurements of Xe isotope ratios in ocean island basalts (OIB) suggest that Earth’s mantle accreted heterogeneously, and that compositional remnants of accretion are sampled by modern, high-3He/4He OIB associated with the Icelandic and Samoan plumes. If so, the high-3He/4He source may also have a distinct oxygen isotopic composition from the rest of the mantle. Here, we test if the major elements of the high-3He/4He source preserve any evidence of heterogeneous accretion using measurements of three oxygen isotopes on olivine from a variety of high-3He/4He OIB locations. To high precision, the Δ17O value of high-3He/4He olivines from Hawaii, Pitcairn, Baffin Island and Samoa, are indistinguishable from bulk mantle olivine (Δ17OBulk Mantle − Δ17OHigh 3He/4He olivine = −0.002 ± 0.004 (2 × SEM)‰). Thus, there is no resolvable oxygen isotope evidence for heterogeneous accretion in the high-3He/4He source. Modelling of mixing processes indicates that if an early-forming, oxygen-isotope distinct mantle did exist, either the anomaly was extremely small, or the anomaly was homogenised away by later mantle convection. The δ18O values of olivine with the highest 3He/4He ratios from a variety of OIB locations have a relatively uniform composition (∼5‰). This composition is intermediate to values associated with the depleted MORB mantle and the average mantle. Similarly, δ18O values of olivine from high-3He/4He OIB correlate with radiogenic isotope ratios of He, Sr, and Nd. Combined, this suggests that magmatic oxygen is sourced from the same mantle as other, more incompatible elements and that the intermediate δ18O value is a feature of the high-3He/4He mantle source. The processes responsible for the δ18O signature of high-3He/4He mantle are not certain, but δ18O–87Sr/86Sr correlations indicate that it may be connected to a predominance of a HIMU-like (high U/Pb) component or other moderate δ18O components recycled into the high-3He/4He source

Regulation of the androgen receptor by SET9-mediated methylation

The androgen receptor (AR) is a member of the nuclear hormone receptor family of transcription factors that plays a critical role in regulating expression of genes involved in prostate development and transformation. Upon hormone binding, the AR associates with numerous co-regulator proteins that regulate the activation status of target genes via flux to the post-translational modification status of histones and the receptor. Here we show that the AR interacts with and is directly methylated by the histone methyltransferase enzyme SET9. Methylation of the AR on lysine 632 is necessary for enhancing transcriptional activity of the receptor by facilitating both inter-domain communication between the N- and C-termini and recruitment to androgen-target genes. We also show that SET9 is pro-proliferative and anti-apoptotic in prostate cancer cells and demonstrates up-regulated nuclear expression in prostate cancer tissue. In all, our date indicate a new mechanism of AR regulation that may be therapeutically exploitable for prostate cancer treatment

Beyond equilibrium: Re-evaluating physical modelling of fluvial systems to represent climate changes

© 2018 Elsevier B.V. The interactions between water, sediment and biology in fluvial systems are complex and driven by multiple forcing mechanisms across a range of spatial and temporal scales. In a changing climate, some meteorological drivers are expected to become more extreme with, for example, more prolonged droughts or more frequent flooding. Such environmental changes will potentially have significant consequences for the human populations and ecosystems that are dependent on riverscapes, but our understanding of fluvial system response to external drivers remains incomplete. As a consequence, many of the predictions of the effects of climate change have a large uncertainty that hampers effective management of fluvial environments. Amongst the array of methodological approaches available to scientists and engineers charged with improving that understanding, is physical modelling. Here, we review the role of physical modelling for understanding both biotic and abiotic processes and their interactions in fluvial systems. The approaches currently employed for scaling and representing fluvial processes in physical models are explored, from 1:1 experiments that reproduce processes at real-time or time scales of 10 −1 -10 0 years, to analogue models that compress spatial scales to simulate processes over time scales exceeding 10 2 –10 3 years. An important gap in existing capabilities identified in this study is the representation of fluvial systems over time scales relevant for managing the immediate impacts of global climatic change; 10 1 – 10 2 years, the representation of variable forcing (e.g. storms), and the representation of biological processes. Research to fill this knowledge gap is proposed, including examples of how the time scale of study in directly scaled models could be extended and the time scale of landscape models could be compressed in the future, through the use of lightweight sediments, and innovative approaches for representing vegetation and biostabilisation in fluvial environments at condensed time scales, such as small-scale vegetation, plastic plants and polymers. It is argued that by improving physical modelling capabilities and coupling physical and numerical models, it should be possible to improve understanding of the complex interactions and processes induced by variable forcing within fluvial systems over a broader range of time scales. This will enable policymakers and environmental managers to help reduce and mitigate the risks associated with the impacts of climate change in rivers

Heat-kernels and functional determinants on the generalized cone

We consider zeta functions and heat-kernel expansions on the bounded, generalized cone in arbitrary dimensions using an improved calculational technique. The specific case of a global monopole is analysed in detail and some restrictions thereby placed on the $A_{5/2}$ coefficient. The computation of functional determinants is also addressed. General formulas are given and known results are incidentally, and rapidly, reproduced.Comment: 26p,LaTeX.(Cosmetic changes and eqns (9.8),(11.2) corrected.

Energy spectrum of a 2D Dirac electron in the presence of a constant magnetic field

In this paper we obtain exact solutions of a 2D relativistic Dirac oscillator in the presence of a constant magnetic field. We compute the energy spectrum and discuss its dependence on the spin and magnetic field strength.Comment: 7 page

Mapping crustal shear wave velocity structure and radial anisotropy beneath West Antarctica using seismic ambient noise

Using 8‐25s period Rayleigh and Love wave phase velocity dispersion data extracted from seismic ambient noise, we (i) model the 3D shear wave velocity structure of the West Antarctic crust and (ii) map variations in crustal radial anisotropy. Enhanced regional resolution is offered by the UK Antarctic Seismic Network. In the West Antarctic Rift System (WARS), a ridge of crust ~26‐30km thick extending south from Marie Byrd Land separates domains of more extended crust (~22km thick) in the Ross and Amundsen Sea Embayments, suggesting along‐strike variability in the Cenozoic evolution of the WARS. The southern margin of the WARS is defined along the southern Transantarctic Mountains (TAM) and Haag Nunataks‐Ellsworth Whitmore Mountains (HEW) block by a sharp crustal thickness gradient. Crust ~35‐40km is modelled beneath the Haag Nunataks‐Ellsworth Mountains, decreasing to ~30‐32km km thick beneath the Whitmore Mountains, reflecting distinct structural domains within the composite HEW block. Our analysis suggests that the lower crust and potentially the mid crust is positively radially anisotropic (VSH > VSV) across West Antarctica. The strongest anisotropic signature is observed in the HEW block, emphasising its unique provenance amongst West Antarctica's crustal units, and conceivably reflects a ~13km thick metasedimentary succession atop Precambrian metamorphic basement. Positive radial anisotropy in the WARS crust is consistent with observations in extensional settings, and likely reflects the lattice‐preferred orientation of minerals such as mica and amphibole by extensional deformation. Our observations support a contention that anisotropy may be ubiquitous in continental crust