Observation of a local gravity potential isosurface by airborne lidar of Lake Balaton, Hungary

Airborne lidar is a remote sensing method commonly used for mapping surface topography in high resolution. A water surface in hydrostatic equilibrium theoretically represents a gravity potential isosurface. Here we compare lidar-based ellipsoidal water surface height measurements all around the shore of a major lake with a local high-resolution quasi-geoid model. The ellipsoidal heights of the 87 km2 we sampled all around the shore of the 597 km2 lake surface vary by 0.8m and strong spatial correlation with the quasi-geoid undulation was calculated (R2 = 0.91). After subtraction of the local geoid undulation from the measured ellipsoidal water surface heights, their variation was considerably reduced. Based on a network of water gauge measurements, dynamic water surface heights were also successfully corrected for. This demonstrates that the water surface heights of the lake were truly determined by the local gravity potential.We conclude that both the level of hydrostatic equilibrium of the lake and the accuracy of airborne lidar were sufficient for identifying the spatial variations of gravity potential

MODELLING OF COLLECTIVE MOVEMENT IN IMMERSIVE ENVIRONMENTS

Immersive technologies allow us to map physical reality by means of 4D virtual systems in ever higher spatial and temporal detail, up to a scale level of 1 : 1. This level of detail enables the representation of phenomena that have been widely ignored by the geovisualization research agenda as yet. An example for such a large scale phenomenon is the collective movement of animals, which can be modelled and visualized only at a fine grained spatio-temporal resolution. This paper focuses on how collective movement can be modelled in an immersive virtual reality (VR) geovisualization. In a brief introduction on immersion and spatial presence we will argue, that high fidelity and realistic VR can strengthen the users’ involvement with the issues visualized. We will then discuss basic characteristics of swarming in nature and review the principal models that have been presented to formalize this collective behavior. Based on the rules of (1) collision avoidance, (2) polarization, (3) aggregation and (4) self-organized criticality we will formulate a viable solution of modelling collective movement within a geovisualization immersive virtual environment. An example of use and results will be presented

Probabilistic fire spread forecast as a management tool in an operational setting

Background: An approach to predict fire growth in an operational setting, with the potential to be used as a decision-support tool for fire management, is described and evaluated. The operational use of fire behaviour models has mostly followed a deterministic approach, however, the uncertainty associated with model predictions needs to be quantified and included in wildfire planning and decision-making process during fire suppression activities. We use FARSITE to simulate the growth of a large wildfire. Probabilistic simulations of fire spread are performed, accounting for the uncertainty of some model inputs and parameters. Deterministic simulations were performed for comparison. We also assess the degree to which fire spread modelling and satellite active fire data can be combined, to forecast fire spread during large wildfires events. Results: Uncertainty was propagated through the FARSITE fire spread modelling system by randomly defining 100 different combinations of the independent input variables and parameters, and running the correspondent fire spread simulations in order to produce fire spread probability maps. Simulations were initialized with the reported ignition location and with satellite active fires. The probabilistic fire spread predictions show great potential to be used as a fire management tool in an operational setting, providing valuable information regarding the spatial–temporal distribution of burn probabilities. The advantage of probabilistic over deterministic simulations is clear when both are compared. Re-initializing simulations with satellite active fires did not improve simulations as expected. Conclusion: This information can be useful to anticipate the growth of wildfires through the landscape with an associated probability of occurrence. The additional information regarding when, where and with what probability the fire might be in the next few hours can ultimately help minimize the negative environmental, social and economic impacts of these firesinfo:eu-repo/semantics/publishedVersio

Fleas as parasites of the family Canidae

Historically, flea-borne diseases are among the most important medical diseases of humans. Plague and murine typhus are known for centuries while the last years brought some new flea-transmitted pathogens, like R. felis and Bartonella henselae. Dogs may play an essential or an accidental role in the natural transmission cycle of flea-borne pathogens. They support the growth of some of the pathogens or they serve as transport vehicles for infected fleas between their natural reservoirs and humans. More than 15 different flea species have been described in domestic dogs thus far. Several other species have been found to be associated with wild canids. Fleas found on dogs originate from rodents, birds, insectivores and from other Carnivora. Dogs therefore may serve as ideal bridging hosts for the introduction of flea-borne diseases from nature to home. In addition to their role as ectoparasites they cause nuisance for humans and animals and may be the cause for severe allergic reactions

A candidate ion-retaining state in the inward-facing conformation of sodium/galactose symporter: Clues from atomistic simulations

The recent Vibrio parahaemolyticus sodium/galactose (vSGLT) symporter crystal structure captures the protein in an inward-facing substrate-bound conformation, with the sodium ion placed, by structural alignment, in a site equivalent to the Na2 site of the leucine transporter (LeuT). A recent study, based on molecular dynamics simulations, showed that the sodium ion spontaneously leaves its initial position diffusing outside vSGLT, toward the intracellular space. This suggested that the crystal structure corresponds to an ion-releasing state of the transporter. Here, using metadynamics, we identified a more stable Na+ binding site corresponding to a putative ion-retaining state of the transporter. In addition, our simulations, consistently with mutagenesis studies, highlight the importance of D189 that, without being one of the NA(+)-coordinating residues, regulates its binding/release

Family resemblances: A common fold for some dimeric ion-coupled secondary transporters

Membrane transporter proteins catalyze the passage of a broad range of solutes across cell membranes, allowing the uptake and efflux of crucial compounds. Because of the difficulty of expressing, purifying, and crystallizing integral membrane proteins, relatively few transporter structures have been elucidated to date. Although every membrane transporter has unique characteristics, structural and mechanistic similarities between evolutionarily diverse transporters have been identified. Here, we compare two recently reported structures of membrane proteins that act as antimicrobial efflux pumps, namely MtrF from Neisseria gonorrhoeae and YdaH from Alcanivorax borkumensis, both with each other and with the previously published structure of a sodium-dependent dicarboxylate transporter from Vibrio cholerae, VcINDY. MtrF and YdaH belong to the p-aminobenzoyl-glutamate transporter (AbgT) family and have been reported as having architectures distinct from those of all other families of transporters. However, our comparative analysis reveals a similar structural arrangement in all three proteins, with highly conserved secondary structure elements. Despite their differences in biological function, the overall "design principle" of MtrF and YdaH appears to be almost identical to that of VcINDY, with a dimeric quaternary structure, helical hairpins, and clear boundaries between the transport and scaffold domains. This observation demonstrates once more that the same secondary transporter architecture can be exploited for multiple distinct transport modes, including cotransport and antiport. Based on our comparisons, we detected conserved motifs in the substrate-binding region and predict specific residues likely to be involved in cation or substrate binding. These findings should prove useful for the future characterization of the transport mechanisms of these families of secondary active transporters

Operational active fire mapping and burnt area identification applicable to Mexican Nature Protection Areas using MODIS and NOAA-AVHRR direct readout data

Since 1999, the National Commission for the Knowledge and Use of the Biodiversity (CONABIO) in Mexico has been developing and managing the “Operational program for the detection of hot-spots using remote sensing techniques”. This program uses images from the MODerate resolution Imaging Spectroradiometer (MODIS) onboard the Terra and Aqua satellites and from the Advanced Very High Resolution Radiometer of the National Oceanic and Atmospheric Administration (NOAA-AVHRR), which are operationally received through the Direct Readout station (DR) at CONABIO. This allows the near-real time monitoring of fire events in Mexico and Central America. In addition to the detection of active fires, the location of hot spots are classified with respect to vegetation types, accessibility, and risk to Nature Protection Areas (NPA). Besides the fast detection of fires, further analysis is necessary due to the considerable effects of forest fires on biodiversity and human life. This fire impact assessment is crucial to support the needs of resource managers and policy makers for adequate fire recovery and restoration actions. CONABIO attempts to meet these requirements, providing post-fire assessment products as part of the management system in particular for satellite-based burnt area mapping. This paper provides an overview of the main components of the operational system and will present an outlook to future activities and system improvements, especially the development of a burnt area product. A special focus will also be placed on the fire occurrence within NPAs of Mexic

Land cover change analysis in Mexico using 30m Landsat and 250m MODIS data

Change detection is one of the most important and widely requested applications of terrestrial remote sensing. Despite a wealth of techniques and successful studies, there is still a need for research in remote sensing science. This paper addresses two important issues: the temporal and spatial scales of change maps. Temporal scales relate to the time interval between observations for successful change detection. We compare annual change detection maps accumulated over five years against direct change detection over that period. Spatial scales relate to the spatial resolution of remote sensing products. We compare fractions from 30m Landsat change maps to 250m grid cells that match MODIS change products. Results suggest that change detection at annual scales better detect abrupt changes, in particular those that do not persist over a longer period. The analysis across spatial scales strongly recommends the use of an appropriate analysis technique, such as change fractions from fine spatial resolution data for comparison with coarse spatial resolution maps. Plotting those results in bi-dimensional error space and analyzing various criteria, the “lowest cost”, according to a user defined (here hyperbolic) cost function, was found most useful. In general, we found a poor match between Landsat and MODIS-based change maps which, besides obvious differences in the capabilities to detect change, is likely related to change detection errors in both data sets

MOSAICKING MEXICO - THE BIG PICTURE OF BIG DATA

The project presented in this article is to create a completely seamless and cloud-free mosaic of Mexico at a resolution of 5m, using approximately 4,500 RapidEye images. To complete this project in a timely manner and with limited operators, a number of processing architectures were required to handle a data volume of 12 terabytes. This paper will discuss the different operations realized to complete this project, which include, preprocessing, mosaic generation and post mosaic editing. Prior to mosaic generation, it was necessary to filter the 50,000 RapidEye images captured over Mexico between 2011 and 2014 to identify the top candidate images, based on season and cloud cover. Upon selecting the top candidate images, PCI Geomatics’ GXL system was used to reproject, color balance and generate seamlines for the output 1TB+ mosaic. This paper will also discuss innovative techniques used by the GXL for color balancing large volumes of imagery with substantial radiometric differences. Furthermore, post-mosaicking steps, such as, exposure correction, cloud and cloud shadow elimination will be presented

Unidades oceanográficas del Golfo de México y áreas adyacentes: La integración mensual de las características biofísicas superficiales

El Golfo de México (GoM) es una región oceánica de una dinámica y complejidad particular, que se evidencia en las variaciones espacio temporales de la configuración de sus aguas superficiales. Varios estudios han utilizado las características superficiales térmicas, biológicas o de circulación para proponer subdivisiones estáticas del GoM; sin embargo, ninguna investigación ha regionalizado la zona integrando distintos aspectos oceanográficos de forma dinámica. El objetivo de este trabajo fue proponer una división del GoM que considerara las características físicas y biológicas y que permitiera analizar la evolución mensual espacial de las unidades en un año promedio. Utilizamos análisis multivariados para reconocer la estructura subyacente de los datos, para generar una expresión espacial mensual de los conglomerados y para probar la robustez de los resultados. Se obtuvieron 18 regiones denominadas unidades oceanográficas (UO) que condensan diversas características superficiales del GoM. Se observaron dos grupos de UO: aquellas que están relacionadas con las propiedades de circulación y aquellas que fueron definidas por la asociación de las características biológicas y térmicas. Quince UO están presentes a lo largo del año, mientras que dos tienen presencia únicamente en verano. Todas las UO tienen variaciones temporales tanto en sus características biofísicas como en su expresión espacial. Este estudio propone una manera novedosa de particionar un sistema marino y aporta parámetros cuantitativos interpretables de las UO propuestas. La representación de la variabilidad de unidades oceanográficas homogéneas provee información valiosa para el manejo diferenciado de recursos marinos asociados temporalmente a masas de agua especificas. Los resultados obtenidos proveen también bases robustas para analizar de manera condensada la dinámica de largo plazo de un sistema tan complejo como es el GoM. doi: https://doi.org/10.22201/igeof.00167169p.2019.58.4.205