129 research outputs found
Observations of near-inertial current variability on the New England shelf
Author Posting. © American Geophysical Union, 2005. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Journal of Geophysical Research 110 (2005): C02012, doi:10.1029/2004JC002341.Observations from the Coastal Mixing and Optics (CMO) moored array (deployed from August 1996 through June 1997) and supplemental moored observations are used to describe near-inertial current variability over the New England shelf. Near-inertial band current variance comprises 10â20% of the total observed current variance, and has episodic peak speeds exceeding 30 cm sâ1. Near-inertial current variability during CMO is characterized by a first baroclinic mode vertical structure with one zero-crossing between 15 and 50 m. The zero-crossing is shallower during periods of stronger stratification. Laterally, near-inertial variability is coherent over the extent of the CMO moored array, and cross-shelf decorrelation scales for near-inertial currents are about 100 km, approximately the entire shelf width. The magnitude of near-surface near-inertial variability is stronger in the summer and weaker in the winter, following the seasonal variation in stratification and opposite the seasonal cycle in wind stress variance. During CMO, near-surface near-inertial kinetic energy is inversely related to surface mixed layer depth. Near-inertial variance decreases onshore, matching approximately the cross-shelf decrease in near-inertial energy predicted by a two-dimensional, linear, flat-bottom, two-layer, coastal wall model. In this model, the nullifying effects of a baroclinic wave emanating from the coastal wall play a dominant role in controlling the onshore decrease. Finally, strong persistent anticyclonic relative vorticity shifts near-inertial variability on the New England shelf to subinertial frequencies.Funding for the
CMO experiment and subsequent analysis was provided by the Office of
Naval Research under grants N00014-95-1-0339 and N00014-01-1-0140
Planetary Candidates Observed by Kepler VI: Planet Sample from Q1-Q16 (47 Months)
\We present the sixth catalog of Kepler candidate planets based on nearly 4
years of high precision photometry. This catalog builds on the legacy of
previous catalogs released by the Kepler project and includes 1493 new Kepler
Objects of Interest (KOIs) of which 554 are planet candidates, and 131 of these
candidates have best fit radii <1.5 R_earth. This brings the total number of
KOIs and planet candidates to 7305 and 4173 respectively. We suspect that many
of these new candidates at the low signal-to-noise limit may be false alarms
created by instrumental noise, and discuss our efforts to identify such
objects. We re-evaluate all previously published KOIs with orbital periods of
>50 days to provide a consistently vetted sample that can be used to improve
planet occurrence rate calculations. We discuss the performance of our planet
detection algorithms, and the consistency of our vetting products. The full
catalog is publicly available at the NASA Exoplanet Archive.Comment: 18 pages, to be published in the Astrophysical Journal Supplement
Serie
Overview of Glacial Atlantic Ocean Mapping (GLAMAP 2000)
GLAMAP 2000 presents new reconstructions of the Atlantic's sea surface temperatures (SST) at the Last Glacial Maximum (LGM), defined at both 21,500â18,000 years B.P. (âLast Isotope Maximumâ) and 23,000â19,000 years B.P. (maximum glacial sea level low stand and orbital minimum of solar insolation; EPILOG working group; see Mix et al. [2001]). These reconstructions use 275 sediment cores between the North Pole and 60°S with carefully defined chronostratigraphies. Four categories of core quality are distinguished. More than 100 core sections provide a glacial record with subcentennial- to multicentennial-scale resolution. SST estimates are based on a new set of almost 1000 reference samples of modern planktic foraminifera and on improved transfer-function techniques to deduce SST from census counts of microfossils, including radiolarians and diatoms. New proxies also serve to deduce sea ice boundaries. The GLAMAP 2000 SST patterns differ significantly in crucial regions from the CLIMAP [1981] reconstruction and thus are important in providing updated boundary conditions to initiate and validate computational models for climate prediction
Principal variable selection to explain grain yield variation in winter wheat from features extracted from UAV imagery
Background: Automated phenotyping technologies are continually advancing the breeding process. However, collecting various secondary traits throughout the growing season and processing massive amounts of data still take great efforts and time. Selecting a minimum number of secondary traits that have the maximum predictive power has the potential to reduce phenotyping efforts. The objective of this study was to select principal features extracted from UAV imagery and critical growth stages that contributed the most in explaining winter wheat grain yield. Five dates of multispectral images and seven dates of RGB images were collected by a UAV system during the spring growing season in 2018. Two classes of features (variables), totaling to 172 variables, were extracted for each plot from the vegetation index and plant height maps, including pixel statistics and dynamic growth rates. A parametric algorithm, LASSO regression (the least angle and shrinkage selection operator), and a non-parametric algorithm, random forest, were applied for variable selection. The regression coefficients estimated by LASSO and the permutation importance scores provided by random forest were used to determine the ten most important variables influencing grain yield from each algorithm.
Results: Both selection algorithms assigned the highest importance score to the variables related with plant height around the grain filling stage. Some vegetation indices related variables were also selected by the algorithms mainly at earlier to mid growth stages and during the senescence. Compared with the yield prediction using all 172 variables derived from measured phenotypes, using the selected variables performed comparable or even better. We also noticed that the prediction accuracy on the adapted NE lines (r = 0.58â0.81) was higher than the other lines (r = 0.21â0.59) included in this study with different genetic backgrounds.
Conclusions: With the ultra-high resolution plot imagery obtained by the UAS-based phenotyping we are now able to derive more features, such as the variation of plant height or vegetation indices within a plot other than just an averaged number, that are potentially very useful for the breeding purpose. However, too many features or variables can be derived in this way. The promising results from this study suggests that the selected set from those variables can have comparable prediction accuracies on the grain yield prediction than the full set of them but possibly resulting in a better allocation of efforts and resources on phenotypic data collection and processing
The Occurrence of Rocky Habitable-zone Planets around Solar-like Stars from Kepler Data
We present the occurrence rates for rocky planets in the habitable zones (HZs) of main-sequence dwarf stars based on the Kepler DR25 planet candidate catalog and Gaia-based stellar properties. We provide the first analysis in terms of star-dependent instellation flux, which allows us to track HZ planets. We define ηâ as the HZ occurrence of planets with radii between 0.5 and 1.5 Râ orbiting stars with effective temperatures between 4800 and 6300 K. We find that ηâ for the conservative HZ is between 0.37^(+0.48)_(â0.21) (errors reflect 68% credible intervals) and 0.60^(+0.90)_(â0.36) planets per star, while the optimistic HZ occurrence is between 0.58^(+0.73)_(â0.33) and 0.88^(+1.28)_(â0.51) planets per star. These bounds reflect two extreme assumptions about the extrapolation of completeness beyond orbital periods where DR25 completeness data are available. The large uncertainties are due to the small number of detected small HZ planets. We find similar occurrence rates between using Poisson likelihood Bayesian analysis and using Approximate Bayesian Computation. Our results are corrected for catalog completeness and reliability. Both completeness and the planet occurrence rate are dependent on stellar effective temperature. We also present occurrence rates for various stellar populations and planet size ranges. We estimate with 95% confidence that, on average, the nearest HZ planet around G and K dwarfs is ~6 pc away and there are ~4 HZ rocky planets around G and K dwarfs within 10 pc of the Sun
The Occurrence of Rocky Habitable Zone Planets Around Solar-Like Stars from Kepler Data
We present occurrence rates for rocky planets in the habitable zones (HZ) of
main-sequence dwarf stars based on the Kepler DR25 planet candidate catalog and
Gaia-based stellar properties. We provide the first analysis in terms of
star-dependent instellation flux, which allows us to track HZ planets. We
define as the HZ occurrence of planets with radius between 0.5
and 1.5 orbiting stars with effective temperatures between 4800 K
and 6300 K. We find that for the conservative HZ is between
(errors reflect 68\% credible intervals) and
planets per star, while the optimistic HZ occurrence is
between and planets per star.
These bounds reflect two extreme assumptions about the extrapolation of
completeness beyond orbital periods where DR25 completeness data are available.
The large uncertainties are due to the small number of detected small HZ
planets. We find similar occurrence rates using both a Poisson likelihood
Bayesian analysis and Approximate Bayesian Computation. Our results are
corrected for catalog completeness and reliability. Both completeness and the
planet occurrence rate are dependent on stellar effective temperature. We also
present occurrence rates for various stellar populations and planet size
ranges. We estimate with confidence that, on average, the nearest HZ
planet around G and K dwarfs is about 6 pc away, and there are about 4 HZ rocky
planets around G and K dwarfs within 10 pc of the Sun.Comment: To appear in The Astronomical Journa
Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions
BackgroundTargeted sequencing using oncopanels requires comprehensive assessments of accuracy and detection sensitivity to ensure analytical validity. By employing reference materials characterized by the U.S. Food and Drug Administration-led SEquence Quality Control project phase2 (SEQC2) effort, we perform a cross-platform multi-lab evaluation of eight Pan-Cancer panels to assess best practices for oncopanel sequencing.ResultsAll panels demonstrate high sensitivity across targeted high-confidence coding regions and variant types for the variants previously verified to have variant allele frequency (VAF) in the 5-20% range. Sensitivity is reduced by utilizing VAF thresholds due to inherent variability in VAF measurements. Enforcing a VAF threshold for reporting has a positive impact on reducing false positive calls. Importantly, the false positive rate is found to be significantly higher outside the high-confidence coding regions, resulting in lower reproducibility. Thus, region restriction and VAF thresholds lead to low relative technical variability in estimating promising biomarkers and tumor mutational burden.ConclusionThis comprehensive study provides actionable guidelines for oncopanel sequencing and clear evidence that supports a simplified approach to assess the analytical performance of oncopanels. It will facilitate the rapid implementation, validation, and quality control of oncopanels in clinical use.Peer reviewe
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