304 research outputs found
Ground-state properties of tubelike flexible polymers
In this work we investigate structural properties of native states of a
simple model for short flexible homopolymers, where the steric influence of
monomeric side chains is effectively introduced by a thickness constraint. This
geometric constraint is implemented through the concept of the global radius of
curvature and affects the conformational topology of ground-state structures. A
systematic analysis allows for a thickness-dependent classification of the
dominant ground-state topologies. It turns out that helical structures,
strands, rings, and coils are natural, intrinsic geometries of such tubelike
objects
One-way multigrid method in electronic structure calculations
We propose a simple and efficient one-way multigrid method for
self-consistent electronic structure calculations based on iterative
diagonalization. Total energy calculations are performed on several different
levels of grids starting from the coarsest grid, with wave functions
transferred to each finer level. The only changes compared to a single grid
calculation are interpolation and orthonormalization steps outside the original
total energy calculation and required only for transferring between grids. This
feature results in a minimal amount of code change, and enables us to employ a
sophisticated interpolation method and noninteger ratio of grid spacings.
Calculations employing a preconditioned conjugate gradient method are presented
for two examples, a quantum dot and a charged molecular system. Use of three
grid levels with grid spacings 2h, 1.5h, and h decreases the computer time by
about a factor of 5 compared to single level calculations.Comment: 10 pages, 2 figures, to appear in Phys. Rev. B, Rapid Communication
Evaluation of the BCS Approximation for the Attractive Hubbard Model in One Dimension
The ground state energy and energy gap to the first excited state are
calculated for the attractive Hubbard model in one dimension using both the
Bethe Ansatz equations and the variational BCS wavefunction. Comparisons are
provided as a function of coupling strength and electron density. While the
ground state energies are always in very good agreement, the BCS energy gap is
sometimes incorrect by an order of magnitude, particularly at half-filling.
Finite size effects are also briefly discussed for cases where an exact
solution in the thermodynamic limit is not possible. In general, the BCS result
for the energy gap is poor compared to the exact result.Comment: 25 pages, 5 Postscript figure
The Shapes of Dirichlet Defects
If the vacuum manifold of a field theory has the appropriate topological
structure, the theory admits topological structures analogous to the D-branes
of string theory, in which defects of one dimension terminate on other defects
of higher dimension. The shapes of such defects are analyzed numerically, with
special attention paid to the intersection regions. Walls (co-dimension 1
branes) terminating on other walls, global strings (co-dimension 2 branes) and
local strings (including gauge fields) terminating on walls are all considered.
Connections to supersymmetric field theories, string theory and condensed
matter systems are pointed out.Comment: 24 pages, RevTeX, 21 eps figure
Mixed initial conditions to estimate the dynamic critical exponent in short-time Monte Carlo simulation
We explore the initial conditions in short-time critical dynamics to propose
a new method to evaluate the dynamic exponent z. Estimates are obtained with
high precision for 2D Ising model and 2D Potts model for three and four states
by performing heat-bath Monte Carlo simulations.Comment: Latex paper, 2 eps figure
Exact boundary conditions at finite distance for the time-dependent Schrodinger equation
Exact boundary conditions at finite distance for the solutions of the
time-dependent Schrodinger equation are derived. A numerical scheme based on
Crank-Nicholson method is proposed to illustrate its applicability in several
examples.Comment: Latex.tar.gz file, 20 pages, 9 figure
Turbulent diffusion and drift in galactic magnetic fields and the explanation of the knee in the cosmic ray spectrum
We reconsider the scenario in which the knee in the cosmic ray spectrum is
explained as due to a change in the escape mechanism of cosmic rays from the
Galaxy from one dominated by transverse diffusion to one dominated by drifts.
We solve the diffusion equations adopting realistic galactic field models and
using diffusion coefficients appropriate for strong turbulence (with a
Kolmogorov spectrum of fluctuations) and consistent with the assumed magnetic
fields. We show that properly taking into account these effects leads to a
natural explanation of the knee in the spectrum, and a transition towards a
heavier composition above the knee is predicted.Comment: 17 pp., 6 figures; revised version with minor changes. To appear in
JHE
Split-domain calibration of an ecosystem model using satellite ocean colour data
The application of satellite ocean colour data to the calibration of plankton
ecosystem models for large geographic domains, over which their ideal parameters cannot be assumed to be invariant, is investigated. A method is presented for seeking the number and geographic scope of parameter sets which allows the best fit to validation data to be achieved. These are independent data not used in the parameter estimation process. The goodness-of-fit of the optimally calibrated model to the validation data is an objective measure of merit for the model, together with its external forcing data. Importantly, this is a statistic which can be used for comparative evaluation of different models. The method makes use of observations from multiple locations, referred to as stations, distributed across the geographic domain. It relies on a technique for finding groups of stations which can be aggregated for parameter estimation purposes with minimal increase in the resulting misfit between model and observations.The results of testing this split-domain calibration method for a simple zero dimensional model, using observations from 30 stations in the North Atlantic, are presented. The stations are divided into separate calibration and validation sets.
One year of ocean colour data from each station were used in conjunction with a
climatological estimate of the station’s annual nitrate maximum. The results
demonstrate the practical utility of the method and imply that an optimal fit of the model to the validation data would be given by two parameter sets. The corresponding division of the North Atlantic domain into two provinces allows a misfit-based cost to be achieved which is 25% lower than that for the single parameter set obtained using all of the calibration stations. In general, parameters are poorly constrained, contributing to a high degree of uncertainty in model output for unobserved variables. This suggests that limited progress towards a definitive model calibration can be made without including other types of observations
Detection Limits for Super-Hubble Suppression of Causal Fluctuations
We investigate to what extent future microwave background experiments might
be able to detect a suppression of fluctuation power on large scales in flat
and open universe models. Such suppression would arise if fluctuations are
generated by causal processes, and a measurement of a small suppression scale
would be problematic for inflation models, but consistent with many defect
models. More speculatively, a measurement of a suppression scale of the order
of the present Hubble radius could provide independent evidence for a
fine-tuned inflation model leading to a low-density universe. We find that,
depending on the primordial power spectrum, a suppression scale modestly larger
than the visible Horizon can be detected, but that the detectability drops very
rapidly with increasing scale. For models with two periods of inflation, there
is essentially no possibility of detecting a causal suppression scale.Comment: 8 pages, 4 figures, revtex, In Press Physical Review D 200
Physical tests for Random Numbers in Simulations
We propose three physical tests to measure correlations in random numbers
used in Monte Carlo simulations. The first test uses autocorrelation times of
certain physical quantities when the Ising model is simulated with the Wolff
algorithm. The second test is based on random walks, and the third on blocks of
n successive numbers. We apply the tests to show that recent errors in high
precision simulations using generalized feedback shift register algorithms are
due to short range correlations in random number sequences. We also determine
the length of these correlations.Comment: 16 pages, Post Script file, HU-TFT-94-
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