239 research outputs found

    Inferring kangaroo phylogeny from incongruent nuclear and mitochondrial genes

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    The marsupial genus Macropus includes three subgenera, the familiar large grazing kangaroos and wallaroos of M. (Macropus) and M. (Osphranter), as well as the smaller mixed grazing/browsing wallabies of M. (Notamacropus). A recent study of five concatenated nuclear genes recommended subsuming the predominantly browsing Wallabia bicolor (swamp wallaby) into Macropus. To further examine this proposal we sequenced partial mitochondrial genomes for kangaroos and wallabies. These sequences strongly favour the morphological placement of W. bicolor as sister to Macropus, although place M. irma (black-gloved wallaby) within M. (Osphranter) rather than as expected, with M. (Notamacropus). Species tree estimation from separately analysed mitochondrial and nuclear genes favours retaining Macropus and Wallabia as separate genera. A simulation study finds that incomplete lineage sorting among nuclear genes is a plausible explanation for incongruence with the mitochondrial placement of W. bicolor, while mitochondrial introgression from a wallaroo into M. irma is the deepest such event identified in marsupials. Similar such coalescent simulations for interpreting gene tree conflicts will increase in both relevance and statistical power as species-level phylogenetics enters the genomic age. Ecological considerations in turn, hint at a role for selection in accelerating the fixation of introgressed or incompletely sorted loci. More generally the inclusion of the mitochondrial sequences substantially enhanced phylogenetic resolution. However, we caution that the evolutionary dynamics that enhance mitochondria as speciation indicators in the presence of incomplete lineage sorting may also render them especially susceptible to introgression

    Spin diffusion in the low-dimensional molecular quantum Heisenberg antiferromagnet Cu(pyz)(NO3)2 detected with implanted muons

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    We present the results of muon-spin relaxation measurements of spin excitations in the one-dimensional quantum Heisenberg antiferromagnet Cu(pyz)(NO3)2. Using density-functional theory we propose muon sites and assess the degree of perturbation the muon probe causes on the system. We identify a site involving the muon forming a hydroxyl-type bond with an oxygen on the nitrate group that is sensitive to the characteristic spin dynamics of the system. Our measurements of the spin dynamics show that in the temperature range TNJ and that in the related two-dimensional system Cu(pyz)2(ClO4)2

    Calculating invariants as coreflexive bisimulations

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    Invariants, bisimulations and assertions are the main ingredients of coalgebra theory applied to software systems. In this paper we reduce the first to a particular case of the second and show how both together pave the way to a theory of coalgebras which regards invariant predicates as types. An outcome of such a theory is a calculus of invariants’ proof obligation discharge, a fragment of which is presented in the paper. The approach has two main ingredients: one is that of adopting relations as “first class citizens” in a pointfree reasoning style; the other lies on a synergy found between a relational construct, Reynolds’ relation on functions involved in the abstraction theorem on parametric polymorphism and the coalgebraic account of bisimulations and invariants. This leads to an elegant proof of the equivalence between two different definitions of bisimulation found in coalgebra literature (due to B. Jacobs and Aczel & Mendler, respectively) and to their instantiation to the classical Park-Milner definition popular in process algebra.Partially supported by the Fundacao para a Ciencia e a Tecnologia, Portugal, under grant number SFRH/BD/27482/2006

    Transverse field muon-spin rotation signature of the skyrmion-lattice phase in Cu2OSeO3

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    We present the results of transverse field (TF) muon-spin rotation (μ+SR) measurements on Cu2OSeO3, which has a skyrmion-lattice (SL) phase. We measure the response of the TF μ+SR signal in that phase along with the surrounding ones, and suggest how the phases might be distinguished using the results of these measurements. Dipole field simulations support the conclusion that the muon is sensitive to the SL via the TF line shape and, based on this interpretation, our measurements suggest that the SL is quasistatic on a time scale τ > 100 ns

    Anomalous magnetic exchange in a dimerized quantum magnet composed of unlike spin species

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    We present here a study of the magnetic properties of the antiferromagnetic dimer material CuVOF 4 ( H 2 O ) 6 ⋅ H 2 O , in which the dimer unit is composed of two different S = 1 / 2 species, Cu(II) and V(IV). An applied magnetic field of μ 0 H c 1 = 13.1 ( 1 ) T is found to close the singlet-triplet energy gap, the magnitude of which is governed by the antiferromagnetic intradimer J 0 ≈ 21 K, and interdimer J ′ ≈ 1 K, exchange energies, determined from magnetometry and electron-spin resonance measurements. The results of density functional theory (DFT) calculations are consistent with the experimental results. The DFT calculations predict antiferromagnetic coupling along all nearest-neighbor bonds, with the magnetic ground state comprising spins of different species aligning antiparallel to one another, while spins of the same species are aligned parallel. The magnetism in this system cannot be accurately described by the overlap between localized V orbitals and magnetic Cu orbitals lying in the Jahn-Teller (JT) plane, with a tight-binding model based on such a set of orbitals incorrectly predicting that interdimer exchange should be dominant. DFT calculations indicate significant spin density on the bridging oxide, suggesting instead an unusual mechanism in which intradimer exchange is mediated through the O atom on the Cu(II) JT axis

    Implementation of a pharmacogenomics consult service to support the INGENIOUS trial

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    Hospital systems increasingly utilize pharmacogenomic testing to inform clinical prescribing. Successful implementation efforts have been modeled at many academic centers. In contrast, this report provides insights into the formation of a pharmacogenomics consultation service at a safety-net hospital, which predominantly serves low-income, uninsured, and vulnerable populations. The report describes the INdiana GENomics Implementation: an Opportunity for the UnderServed (INGENIOUS) trial and addresses concerns of adjudication, credentialing, and funding

    Observables from a solution of 1+3 dimensional relativistic hydrodynamics

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    In this paper we analyze a 1+3 dimensional solution of relativistic hydrodynamics. We calculate momentum distribution and other observables from the solution and compare them to measurements from the Relativistic Heavy Ion Collider (RHIC). We find that the solution we analyze is compatible with the data. In the last several years many numerical models were tested, but it is the first time that an exact, parametric, 1+3 dimensional relativistic solution is compared to data.Comment: 6 pages, 6 figures. Published in EPJ A. This work was supported by the OTKA grant NK73143 and M. Csanad's Bolyai scholarshi
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