Modelling submillimetre spectra of the protostellar infall candidates NGC1333-IRAS2 and Serpens SMM4

We present a radiative transfer model, which is applicable to the study of submillimetre spectral line observations of protostellar envelopes. The model uses an exact, non-LTE, spherically symmetric radiative transfer `Stenholm' method, which numerically solves the radiative transfer problem by the process of `Lambda-iteration'. We also present submillimetre spectral line data of the Class 0 protostars NGC1333-IRAS2 and Serpens SMM4. We examine the physical constraints which can be used to limit the number and range of parameters used in protostellar envelope models, and identify the turbulent velocity and tracer molecule abundance as the principle sources of uncertainty in the radiative transfer modelling. We explore the trends in the appearance of the predicted line profiles as key parameters in the models are varied. We find that the separation of the two peaks of a typical infall profile is dependent not on the evolutionary status of the collapsing protostar, but on the turbulent velocity dispersion in the envelope. We also find that the line shapes can be significantly altered by rotation. Fits are found for the observed line profiles of IRAS2 and SMM4 using plausible infall model parameters. The density and velocity profiles in our best fit models are inconsistent with a singular isothermal sphere model. We find better agreement with a form of collapse which assumes non-static initial conditions. We also find some evidence that the infall velocities are retarded from free-fall towards the centre of the cloud, probably by rotation, and that the envelope of SMM4 is rotationally flattened.Comment: Accepted by MNRA

Airborne particulate matter monitoring in Kenya using calibrated low-cost sensors [final revised article]

East African countries face an increasing threat from poor air quality stemming from rapid urbanization, population growth, and a steep rise in fuel use and motorization rates. With few air quality monitoring systems available, this study provides much needed high temporal resolution data to investigate the concentrations of particulate matter (PM) air pollution in Kenya. Calibrated low-cost optical particle counters (OPCs) were deployed in Kenya in three locations: two in the capital Nairobi and one in a rural location in the outskirts of Nanyuki, which is upwind of Nairobi. The two Nairobi sites consist of an urban background site and a roadside site. The instruments were composed of an AlphaSense OPC-N2 ran with a Raspberry Pi low-cost microcomputer, packaged in a weather-proof box. Measurements were conducted over a 2-month period (February–March 2017) with an intensive study period when all measurements were active at all sites lasting 2 weeks. When collocated, the three OPCN2 instruments demonstrated good inter-instrument precision with a coefficient of variance of 8.8 ± 2.0 % in the fine particle fraction (PM2.5). The low-cost sensors had an absolute PM mass concentration calibration using a collocated gravimetric measurement at the urban background site in Nairobi. The mean daily PM1 mass concentration measured at the urban roadside, urban background and rural background sites were 23.9, 16.1 and 8.8 µg m−3 , respectively. The mean daily PM2.5 mass concentration measured at the urban roadside, urban background and rural background sites were 36.6, 24.8 and 13.0 µg m−3, respectively. The mean daily PM10 mass concentration measured at the urban roadside, urban background and rural background sites were 93.7, 53.0 and 19.5 µg m−3, respectively. The urban measurements in Nairobi showed that PM concentrations regularly exceed WHO guidelines in both the PM10 and PM2.5 size ranges. Following a “Lenschow”-type approach we can estimate the urban and roadside increments that are applicable to Nairobi (Lenschow et al., 2001). The median urban increment is 33.1 µg m−3 and the median roadside increment is 43.3 µg m−3 for PM2.5. For PM1, the median urban increment is 4.7 µg m−3 and the median roadside increment is 12.6 µg m−3. These increments highlight the importance of both the urban and roadside increments to urban air pollution in Nairobi. A clear diurnal behaviour in PM mass concentration was observed at both urban sites, which peaks during the morning and evening Nairobi rush hours; this was consistent with the high roadside increment indicating that vehicular traffic is a dominant source of PM in the city, accounting for approximately 48.1 %, 47.5 % and 57.2 % of the total PM loading in the PM10, PM2.5 and PM1 size ranges, respectively. Collocated meteorological measurements at the urban sites were collected, allowing for an understanding of the location of major sources of particulate matter at the two sites. The potential problems of using low-cost sensors for PM measurement without gravimetric calibration available at all sites are discussed. This study shows that calibrated low-cost sensors can be successfully used to measure air pollution in cities like Nairobi. It demonstrates that low-cost sensors could be used to create an affordable and reliable network to monitor air quality in cities

Airborne particulate matter monitoring in Kenya using calibrated low cost sensors [discussion paper]

East African countries face an increasing threat from poor air quality, stemming from rapid urbanisation, population growth and a steep rise in fuel use and motorization rates. With few air quality monitoring systems available, this study provides the much needed high temporal resolution data to investigate the concentrations of particulate matter (PM) air pollution in Kenya. Calibrated low cost optical particle counters (OPCs) were deployed in Kenya in three locations: two in the capital of Nairobi and one in a rural location in the outskirts of Nanyuki, which is upwind of Nairobi. The two Nairobi sites consist of an urban background site and a roadside site. The instruments were composed of an Alphasense OPC-N2 optical particle counter (OPC) ran with a raspberry pi low cost microcomputer, packaged in a weather proof box. Measurements were conducted over a two-month period (February–March 2017) with an intensive study period when all measurements were active at all sites lasting two weeks. When collocated, the three OPC-N2 instruments demonstrated good inter-instrument precision with a coefficient of variance of 8.8±2.0% in the PM2.5 fraction. The low cost sensors had an absolute PM mass concentration calibration using a collocated gravimetric measurement at the urban background site in Nairobi. The mean daily PM1 mass concentration measured at the urban roadside, urban background and rural background sites were 23.9, 16.1, 8.8µgm−3. The mean daily PM2.5 mass concentration measured at the urban roadside, urban background and rural background sites were 36.6, 24.8, 13.0µgm−3. The mean daily PM10 mass concentration measured at the urban roadside, urban background and rural background sites were 93.7, 53.0, 19.5µgm−3. The urban measurements in Nairobi showed that particulate matter concentrations regularly exceed WHO guidelines in both the PM10 and PM2.5 size ranges. Following a Lenschow type approach we can estimate the urban and roadside increments that are applicable to Nairobi. Median urban and roadside increments are 33.1 and 43.3µgm−3 for PM10, respectively, the median urban and roadside increments are 7.1 and 18.3µgm−3 for PM2.5, respectively, and the median urban and roadside increments are 4.7 and 12.6µgm−3 for PM1, respectively. These increments highlight the importance of both the urban and roadside increments to urban air pollution in Nairobi. A clear diurnal behaviour in PM mass concentration was observed at both urban sites, which peaks during the morning and evening Nairobi rush hours; this was consistent with the high measured roadside increment indicating vehicular traffic being a dominant source of particulate matter in the city, accounting for approximately 48.1, 47.5, and 57.2% of the total particulate matter loading in the PM10, PM2.5 and PM1 size ranges, respectively. Collocated meteorological measurements at the urban sites were collected, allowing for an understanding of the location of major sources of particulate matter at the two sites. The potential problems of using low cost sensors for PM measurement without gravimetric calibration available at all sites are discussed. This study shows that calibrated low cost sensors can be used successfully to measure air pollution in cities like Nairobi. It demonstrates that low cost sensors could be used to create an affordable and reliable network to monitor air quality in cities

The Regeneration Games: Commodities, Gifts and the Economics of London 2012

This paper considers contradictions between two concurrent and tacit conceptions of the Olympic ‘legacy’, setting out one conception that understands the games and their legacies as gifts alongside and as counterpoint to the prevailing discourse, which conceives Olympic assets as commodities. The paper critically examines press and governmental discussion of legacy, in order to locate these in the context of a wider perspective contrasting ‘gift’ and ‘commodity’ Olympics – setting anthropological conceptions of gift-based sociality as a necessary supplement to contractual and dis-embedded socioeconomic organizational assumptions underpinning the commodity Olympics. Costbenefit planning is central to modern city building and mega-event delivery. The paper considers the insufficiency of this approach as the exclusive paradigm within which to frame and manage a dynamic socio-economic and cultural legacy arising from the 2012 games

Rectal cancer management during the COVID-19 pandemic (ReCaP): multicentre prospective observational study.

Concerns over unacceptable high mortality in patients with rectal cancer undergoing surgery or systemic therapy who contract COVID-19 have led to widespread adoption of alternative treatment strategies.The ReCaP study aimed to study these variations and associated outcomes

Inhalation exposure of animals.

Relative advantages and disadvantages and important design criteria for various exposure methods are presented. Five types of exposures are discussed: whole-body chambers, head-only exposures, nose or mouth-only methods, lung-only exposures, and partial-lung exposures. Design considerations covered include: air cleaning and conditioning; construction materials; losses of exposure materials; evenness of exposure; sampling biases; animal observation and care; noise and vibration control, safe exhausts, chamber loading, reliability, pressure fluctuations; neck seals, masks, animal restraint methods; and animal comfort. Ethical considerations in use of animals in inhalation experiments are also discussed

Native fish in Northland: application of the River Values Assessment System (RiVAS and RiVAS+)

The fourth application of the River Values Assessment System (RiVAS and RiVAS+) for native fisheries value was made in the Northland region. Data for nine out of ten indicators were provided from modelling undertaken by Cawthron Institute using a variety of databases including the NZFFD and FENZ. The expert panel then checked the modelling results and adjusted where appropriate based on local knowledge, and it populated the Population Stronghold indicator. Of 27 river catchment/clusters evaluated, nine were considered of national significance, namely the Bay of Islands North, Bay of Islands South, East Coast, Herekino, Hokianga, Mangamuka, Waihou, Waipoua and Wairoa. The Wairoa scored very poorly for all attributes other than presence of many at risk species. The remaining 18 are of regional significance. No river catchment/clusters were identified as being of local significance. The RIVAS+ identified work that can be done to reduce the inference on migratory fish movements caused by a barrier on the Waipoua River.This work was funded by Northland Regional Council and we gratefully acknowledge their support

Extracellular dsRNA induces a type I interferon response mediated via class A scavenger receptors in a novel Chinook salmon derived spleen cell line

The final publication is available at Elsevier via https://dx.doi.org/10.1016/j.dci.2018.08.010 © 2018. This manuscript version is made available under the CC-BY-NC-ND 4.0 license https://creativecommons.org/licenses/by-nc-nd/4.0/Despite increased global interest in Chinook salmon aquaculture, little is known of their viral immune defenses. This study describes the establishment and characterization of a continuous cell line derived from Chinook salmon spleen, CHSS, and its use in innate immune studies. Optimal growth was seen at 14–18 °C when grown in Leibovitz's L-15 media with 20% fetal bovine serum. DNA analyses confirmed that CHSS was Chinook salmon and genetically different from the only other available Chinook salmon cell line, CHSE-214. Unlike CHSE-214, CHSS could bind extracellular dsRNA, resulting in the rapid and robust expression of antiviral genes. Receptor/ligand blocking assays confirmed that class A scavenger receptors (SR-A) facilitated dsRNA binding and subsequent gene expression. Although both cell lines expressed three SR-A genes: SCARA3, SCARA4, and SCARA5, only CHSS appeared to have functional cell-surface SR-As for dsRNA. Collectively, CHSS is an excellent cell model to study dsRNA-mediated innate immunity in Chinook salmon.Natural Sciences and Engineering Research Council of CanadaCanada Research Counci

Dynamic Analysis of Vascular Morphogenesis Using Transgenic Quail Embryos

Background: One of the least understood and most central questions confronting biologists is how initially simple clusters or sheet-like cell collectives can assemble into highly complex three-dimensional functional tissues and organs. Due to the limits of oxygen diffusion, blood vessels are an essential and ubiquitous presence in all amniote tissues and organs. Vasculogenesis, the de novo self-assembly of endothelial cell (EC) precursors into endothelial tubes, is the first step in blood vessel formation [1]. Static imaging and in vitro models are wholly inadequate to capture many aspects of vascular pattern formation in vivo, because vasculogenesis involves dynamic changes of the endothelial cells and of the forming blood vessels, in an embryo that is changing size and shape. Methodology/Principal Findings: We have generated Tie1 transgenic quail lines Tg(tie1:H2B-eYFP) that express H2B-eYFP in all of their endothelial cells which permit investigations into early embryonic vascular morphogenesis with unprecedented clarity and insight. By combining the power of molecular genetics with the elegance of dynamic imaging, we follow the precise patterning of endothelial cells in space and time. We show that during vasculogenesis within the vascular plexus, ECs move independently to form the rudiments of blood vessels, all while collectively moving with gastrulating tissues that flow toward the embryo midline. The aortae are a composite of somatic derived ECs forming its dorsal regions and the splanchnic derived ECs forming its ventral region. The ECs in the dorsal regions of the forming aortae exhibit variable mediolateral motions as they move rostrally; those in more ventral regions show significant lateral-to-medial movement as they course rostrally. Conclusions/Significance: The present results offer a powerful approach to the major challenge of studying the relative role(s) of the mechanical, molecular, and cellular mechanisms of vascular development. In past studies, the advantages of the molecular genetic tools available in mouse were counterbalanced by the limited experimental accessibility needed for imaging and perturbation studies. Avian embryos provide the needed accessibility, but few genetic resources. The creation of transgenic quail with labeled endothelia builds upon the important roles that avian embryos have played in previous studies of vascular development