180 research outputs found

    Ubiquibodies: Engineered Ubiquitin Ligases With Unnatural Substrate Specificity For Targeted Protein Silencing

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    The ubiquitin-proteasome pathway (UPP) is the main route of protein degradation in eukaryotic cells and aids in regulation of cell cycle and cellular homeostasis. This robust pathway can also be utilized for reverse genetics to accelerate the degradation of otherwise stable cellular target proteins. In this work, we present a generalizable approach for protein knockdown by developing chimera proteins, called "ubiquibodies", which combine the activity of an E3 ubiquitin ligase with the affinity of designer binding proteins (DBPs). Specifically, we have utilized the modular E3 ubiquitin ligase CHIP and replaced its natural substrate-binding domain with antibody mimetic binding domains to create various ubiquibodies. Next, we optimized the chimeric construct expression in E. coli and purified uAbs to test their functional activity in vitro. Ubiquibodies were evaluated for both their target binding and subsequent target ubiquitination in vitro. This was further analyzed using mass spectroscopy to determine substrate ubiquitination sites and chain linkages. Within the eukaryotic cellular context, ubiquibodies were tested for their ability to specifically ubiquitinate and degrade their target proteins. Finally, preliminary work was performed using rational design to improve uAb E2 specificity, ensure flexibility for substrate binding and reduce autoubiquitination. From this foundation, we foresee the ubiquibody technology being a powerful tool to enable the dissection of protein function, including post-translational modifications, and the selective degradation of proteins that underlie human disease

    Speech Communication

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    Contains reports on two research projects.U.S. Navy Office of Naval Research (Contract N00014-67-A-0204-0064)National Institutes of Health (Grant 5 ROl NS04332-09)National Science Foundation (Grant GK-31353

    Digital Signal Processing

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    Contains research objectives and summary of research.National Science Foundation (Grant GK-31353)U. S. Navy Office of Naval Research (Contract N00014-67-A-0204-0064

    FENOMENA KESURUPAN PADA PENARI LENGGER DI KABUPATEN WONOSOBO

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    Tujuan dari penelitian ini adalah untuk memahami fenomena kesurupan yang dialami oleh Penari Lengger di Wonosobo, Jawa Tengah. Penelitian ini mengambil subyek Penari Lengger yang masih aktif dan pernah mengalami kesurupan. Penelitian ini menggunakan metode kualitatif dengan pendekatan fenomenologi. Data diambil dengan cara wawancara dan observasi kepada subyek. Subyek I berumur 45 tahun dan memiliki profesi sebagai penjual mie ongklok, subyek II berumur 21 tahun, belum memiliki profesi tetap namun mengajar Tari Lengger dan subyek III berumur 29 tahun serta memiliki profesi sebagai pengusaha kayu. Hasil dari penelitian ini adalah Lengger merupakan cara leluhur pada jaman dahulu untuk mengingatkan agar berbuat baik dengan nilai-nilai agama yang telah dimasukkan ke dalamnya. Kesurupan yang juga merupakan bagian dari Lengger memiliki makna untuk mengingatkan agar manusia tetap sadar. Secara psikologis kesurupan merupakan ketidaksadaran kolektif yang bangkit dan keluar ke alam sadar

    Digital Signal Processing

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    Contains research objectives and summary of research on seven research projects.Joint Services Electronics Program (Contract DAAB07-76-C-1400)U. S. Navy - Office of Naval Research (Contract N00014-75-C-0951-NR 049-308)National Science Foundation (Grant ENG71-02319-AO2

    Resolving power of diffraction imaging with an objective: a numerical study

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    Diffraction imaging in the far-field can detect 3D morphological features of an object for its coherent nature. We describe methods for accurate calculation and analysis of diffraction images of scatterers of single and double spheres by an imaging unit based on microscope objective at non-conjugate positions. A quantitative study of the calculated diffraction imaging in spectral domain has been performed to assess the resolving power of diffraction imaging. It has been shown numerically that with coherent illumination of 532 nm in wavelength the imaging unit can resolve single spheres of 2 ĂŽÂĽm or larger in diameters and double spheres separated by less than 300 nm between their centers.ECU Open Access Publishing Fun
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