Il Macrofitobenthos

EnInformation about the phytobenthos of the brackish lake of Acquatina are here reported for the first time, as a result of the research Project "Biological and ecological characterisation of the brackish lake of Acquatina (Frigole, LE) aiming at the improvement of fishing management in the respect of the environment (CAGEPRA)". From a floristic point of view, 38 taxa of macroalgae, at a specific and an infraspecific level, were identified. Among them, 21 are Rhodophyta (55%), 3 are Ochrophyta (8%), 14 are Chlorophyta (37%). Two seagrasses were collected: Cymodocea nodosa and Ruppia maritima. Following the directions of the European Waterframe Directive (2000/60), by means of indexes which are based on the phytobenthos as a biological quality element, the ecological status of this transitional environment was assessed. It resulted of high quality. The finding of the non-indigenous invasive clorophycean macroalga Caulerpa racemosa var. cylindracea was particularly interesting, in that it could represent a real threaten for the biodiversity of the lake of Acquatina

Summer macroalgal flora of the brackish lake of Acquatina (Frigole, Lecce, southern Italy)

The brackish lake of Acquatina was studied from a floristic point of view during summer 2006. 24 species were collected in total: 16 Rhodophyta, 2 Ochrophyta, 6 Chlorophyta. Some of these species were reported for the first time from brackish waters

Antibacterial activity of marine macroalgae against fish pathogenic Vibrio species

Abstract In mariculture, diseases of microbial origin can cause significant economic losses worldwide; the evolution of microorganism resistance to antibiotics has resulted in a growing need for new antibacterial compounds that are effective in veterinary medicine and characterized by limited undesirable side effects. Increased attention has recently been turned to seaweeds as a promising source for metabolites with antimicrobial activity. Vibriosis is a common disease, caused by bacteria of the genus Vibrio, that can result in high mortality in aquaculture. The aim of this study was to identify seaweeds with antibacterial activity against some pathogenic Vibrio species, in order to identify a possible alternative to the commonly used antibiotics in aquaculture. Chloroform/methanol lipidic extracts of six seaweed species (Chaetomorpha linum, Cladophora rupestris, Gracilaria dura, Gracilaria gracilis, Gracilariopsis longissima, Ulva prolifera) were tested for their antibacterial activities against six fish pathogenic Vibrio species using the disc diffusion method. Different susceptibilities to lipidic algal extracts were observed. All six of the seaweed extracts tested demonstrated inhibition of Vibrio ordalii. The best was that from Gracilariopsis longissima, showing activity against Vibrio ordalii, Vibrio salmonicida, Vibrio alginolyticus and Vibrio vulnificus. The results confirmed the potential use of seaweed extracts as a source of antibacterial compounds or as a health-promoting feed for aquaculture

Censimento delle macroalghe marine bentoniche delle coste pugliesi

ItSulla base dei dati di letteratura viene presentato un catalogo delle macroalghe marine bentoniche delle coste pugliesi. La flora risulta costituita di 616 taxa a livello specifico e infraspecifico di cui 385 Rhodophyta (compresi 23 taxa inquirenda), 119 Phaeophyta (compresi 5 taxa inquirenda), 105 Chlorophyta (compresi 9 taxa inquirenda), 5 Incertae sedis, 2 Nomina nuda. Inoltre vengono elencati 13 taxa excludenda e 38 taxa identificati solo a livello generico. La flora delle coste adriatiche è risultata molto più ricca (569 specie) di quella delle coste ioniche (450 specie). Le specie comuni ai due mari sono 405, mentre quelle segnalate solo per le coste adriatiche sono 164 e solo 45 quelle esclusive delle coste ioniche. Da un punto di vista fitogeografico la flora mostra particolari affinità con flore di aree meridionali quali l'isola di Linosa, l'isola di Lampedusa e la Tunisia.EnOn the basis of literature data a check-list of the benthic marine macroalgae from Apulia is given. The list of taxa at specific and infraspecific level consists of 384 Rhodophyta (23 taxa inquirenda included), 119 Phaeophyta (5 taxa inquirenda included), 105 Chlorophyta (9 taxa inquirenda included), 5 Incertae sedis, 2 Nomina nuda. Thirteen taxa excludenda and 38 taxa identified at generic level only, are listed too. The flora of the Adriatic coast, with its 569 species, resulted richer than that of the Ionian coast consisting of 450 species. Four hundred and five species are shared by both seas, while 164 and 45 are exclusive of the Adriatic Sea and of the Ionian Sea, respectively. From a phytogeographic point of view, the Apulian flora shows affinities with floras of southern areas like Linosa Island, Lampedusa Island and Tunisia

An Innovative IMTA System: Polychaetes, Sponges and Macroalgae Co-Cultured in a Southern Italian In-Shore Mariculture Plant (Ionian Sea)

In this paper, we report data from the first year of rearing of a set of filter feeder bioremediator organisms: macrobenthic invertebrates (sabellid polychaetes and sponges), coupled with macroalgae, realized in a mariculture fish farm. This innovative integrated multi-trophic aquaculture (IMTA) system was realized at a preindustrial level in the Gulf of Taranto (southern Italy, northern Ionian Sea), within the framework of the EU Remedia Life project. Long lines containing different collector typologies were placed around the fish breeding cages. Vertical collectors were utilized for both polychaetes and sponges, whilst macroalgae were cultivated in horizontal collectors. Data on the growth and mortality of the target species after the first year of rearing and cultivation are given together with their biomass estimation. Polychaete biomass was obtained from natural settlement on ropes previously hung in the system, while sponges and macroalgae were derived from explants and/or inocules inserted in the collectors. The description of the successional pattern occurring on collectors used for settling until reaching a “stable” point is also described, with indications of additional filter feeder macroinvertebrates other than polychaetes and sponges that are easily obtainable and useful in the system as bioremediators as well. The results demonstrate an easy, natural obtaining of large biomass of sabellid polychaetes settling especially from about a 4 to 10 m depth. Sponges and macroalgae need to be periodically cleaned from the fouling covering. The macroalgae cycle was different from that of invertebrates and requires the cultivation of two different species with about a 6-month cycle for each one. The present study represents one of the first attempts at IMTA in the Mediterranean area where invertebrates and macroalgae are co-cultured in an inshore fish farm. Possible utilization of the produced biomass is also suggested

Marine alien species in Italy: A contribution to the implementation of descriptor D2 of the marine strategy framework directive

The re-examination of marine alien species or Non-indigenous species (NIS) reported in Italian Seas by December 2018, is here provided, particularly focusing on establishment success, year of first record, origin, potential invasiveness, and likely pathways. Furthermore, their distribution is assessed according to marine subregions outlined by the European Union (EU) Marine Strategy Framework Directive: Adriatic Sea (ADRIA), Ionian Sea and Central Mediterranean Sea (CMED), and Western Mediterranean Sea (WMED). In Italy, 265 NIS have been detected with the highest number of species being recorded in the CMED (154 species) and the WMED (151 species), followed by the ADRIA (143). Most of these species were recorded in more than one subregion. The NIS that have established stable populations in Italian Seas are 180 (68%), among which 26 have exhibited invasive traits.Among taxa involved, Macrophyta rank first with 65 taxa. Fifty-five of them are established in at least one subregion, mostly in the ADRIA and the CMED. Crustacea rank second with 48 taxa, followed by Polychaeta with 43 taxa, Mollusca with 29 taxa, and Pisces with 28 taxa, which were mainly reported from the CMED. In the period 2012-2017, 44 new alien species were recorded, resulting in approximately one new entry every two months. Approximately half of the NIS (~52%) recorded in Italy have most likely arrived through the transport-stowaway pathway related to shipping traffic (~28% as biofoulers, ~22% in ballast waters, and ~2% as hitchhikers). The second most common pathway is the unaided movement with currents (~19%), followed by the transport-contaminant on farmed shellfishes pathway  (~18%). Unaided is the most common pathway for alien Fisshes, especially in CMED. Escapes from confinement account for ~3% and release in nature for ~2% of the NIS. The present NIS distribution hotspots for new introductions were defined on the first recipient area/location in Italy. In ADRIA the hotspot is Venice which accounts for the highest number of alien taxa introduced in Italy, with 50 newly recorded taxa. In the CMED, hotspots of introduction are the Taranto and Catania Gulfs, hosting 21 first records each. The Strait of Sicily represents a crossroad between the alien taxa from the Atlantic Ocean and the Indo-Pacific area. In the WMED, hotspots of bioinvasions include the Gulfs of Naples, Genoa and Livorno.This review can serve as an updated baseline for future coordination and harmonization of monitoring initiatives under international, EU and regional policies, for the compilation of new data from established monitoring programs, and for rapid assessment surveys.

The Italian long-term ecosystem research (LTER-Italy) network: results, opportunities, and challenges for coastal transitional ecosystems

1 - The Long-Term Ecosystem Research (LTER) network, now a global reality, was founded on a combination of long-term ecological studies, short-term experiments, and comparisons among sites and eco-domains. 2 - The LTER-Italy network was officially established as a formal member of the LTER international network in 2006, following a wider on-going process in Europe; it currently consists of 22 sites representing the main ecosystem typologies of Italy. Four coastal transitional ecosystem sites are included in the LTER-Italy network: on the northern Peninsula, these include the Venice Lagoon and the lagoons of the Po River Delta, which are characterized by a temperate climate and the influence of tides; and in the southern sector, these include the coastal ecosystems of Sardinia and the Mar Piccolo of Taranto, which are characterized by a Mediterranean climate and the absence of sensible tides. 3 - In this paper, we present and discuss three main issues: the LTER-International and LTER-Europe context, emphasising the most practical issues and activities that must be addressed for the effective organization and maintenance of LTER networks; the history, structure, and perspectives of the national LTER-Italy network; and the opportunities, strengths, and weaknesses related to participation of the LTER-Italy network in the study of coastal transitional ecosystems

An explainable model of host genetic interactions linked to COVID-19 severity

We employed a multifaceted computational strategy to identify the genetic factors contributing to increased risk of severe COVID-19 infection from a Whole Exome Sequencing (WES) dataset of a cohort of 2000 Italian patients. We coupled a stratified k-fold screening, to rank variants more associated with severity, with the training of multiple supervised classifiers, to predict severity based on screened features. Feature importance analysis from tree-based models allowed us to identify 16 variants with the highest support which, together with age and gender covariates, were found to be most predictive of COVID-19 severity. When tested on a follow-up cohort, our ensemble of models predicted severity with high accuracy (ACC = 81.88%; AUCROC = 96%; MCC = 61.55%). Our model recapitulated a vast literature of emerging molecular mechanisms and genetic factors linked to COVID-19 response and extends previous landmark Genome-Wide Association Studies (GWAS). It revealed a network of interplaying genetic signatures converging on established immune system and inflammatory processes linked to viral infection response. It also identified additional processes cross-talking with immune pathways, such as GPCR signaling, which might offer additional opportunities for therapeutic intervention and patient stratification. Publicly available PheWAS datasets revealed that several variants were significantly associated with phenotypic traits such as "Respiratory or thoracic disease", supporting their link with COVID-19 severity outcome.A multifaceted computational strategy identifies 16 genetic variants contributing to increased risk of severe COVID-19 infection from a Whole Exome Sequencing dataset of a cohort of Italian patients

Carriers of ADAMTS13 Rare Variants Are at High Risk of Life-Threatening COVID-19

Thrombosis of small and large vessels is reported as a key player in COVID-19 severity. However, host genetic determinants of this susceptibility are still unclear. Congenital Thrombotic Thrombocytopenic Purpura is a severe autosomal recessive disorder characterized by uncleaved ultra-large vWF and thrombotic microangiopathy, frequently triggered by infections. Carriers are reported to be asymptomatic. Exome analysis of about 3000 SARS-CoV-2 infected subjects of different severities, belonging to the GEN-COVID cohort, revealed the specific role of vWF cleaving enzyme ADAMTS13 (A disintegrin-like and metalloprotease with thrombospondin type 1 motif, 13). We report here that ultra-rare variants in a heterozygous state lead to a rare form of COVID-19 characterized by hyper-inflammation signs, which segregates in families as an autosomal dominant disorder conditioned by SARS-CoV-2 infection, sex, and age. This has clinical relevance due to the availability of drugs such as Caplacizumab, which inhibits vWF-platelet interaction, and Crizanlizumab, which, by inhibiting P-selectin binding to its ligands, prevents leukocyte recruitment and platelet aggregation at the site of vascular damage