Source energy spectra from demodulation of solar particle data by interplanetary and coronal transport

The data on source energy spectra of solar cosmic rays (SCR), i.e. the data on the spectrum form and on the absolute SCR are of interest for three reasons: (1) the SCR contain the energy comparable to the total energy of electromagnetic flare radiation (less than or equal to 10 to the 32nd power ergs); (2) the source spectrum form indicates a possible acceleration mechanism (or mechanism); and (3) the accelerated particles are efficiently involved in nuclear electromagnetic and plasma processes in the solar atmosphere. Therefore, the data on SCR source spectra are necessary for a theoretical description of the processes mentioned and for the formulation of the consistent flare model. Below it is attempted to sound solar particle sources by means of SCR energy spectrum obtained near the Sun, at the level of the roots of the interplanetary field lines in the upper solar corona. Data from approx. 60 solar proton events (SPE) between 1956-1981. These data were obtained mainly by the interplanetary demodulation of observed fluxes near the Earth. Further, a model of coronal azimuthal transport is used to demodulate those spectra, and to obtain the source energy spectra

Cloning, in silico structural characterization and expression analysis of MfAtr4, an ABC transporter from the banana pathogen Mycosphaerella fijiensis

ABC transporters are membrane proteins that use the energy released from the hydrolysis of ATP to drive the transport of compounds across biological membranes. In some plants, pathogenic fungi ABC transporters play a role as virulence factors by mediating the export of plant defense compounds or fungal virulence factors. Mycosphaerella fijiensis, the causal agent of black Sigatoka disease in banana, is the main constraint for the banana industry worldwide. So far, little is known about molecular mechanism that it uses to infect the host. In this study, degenerated primers designed from fungal ABC transporters known to be involved in virulence were used to isolate homologs from M. fijiensis. Here, we reported the full cloning of MfAtr4 a putative ortholog of MgAtr4, an ABC transporter of the related Mycosphaerella graminicola with a function in virulence. Similarities and differences with its presumed ortholog MgAtr4 are described, and the putative function of MfAtr4 are discussed. Analysis of MfAtr4 gene expression in field banana samples exhibiting visible symptoms of black Sigatoka disease indicated a higher expression of MfAtr4 during the first symptomatic stages in comparison to the late necrotrophic phases, suggesting a role for MfAtr4 in the early stages of pathogenic development of M. fijiensis.Key words: ABC transporters, virulence factors, MgAtr4 ortholog, Mycosphaerella fijiensis, black Sigatoka, Musa sp

Image Compositing for Segmentation of Surgical Tools Without Manual Annotations

Producing manual, pixel-accurate, image segmentation labels is tedious and time-consuming. This is often a rate-limiting factor when large amounts of labeled images are required, such as for training deep convolutional networks for instrument-background segmentation in surgical scenes. No large datasets comparable to industry standards in the computer vision community are available for this task. To circumvent this problem, we propose to automate the creation of a realistic training dataset by exploiting techniques stemming from special effects and harnessing them to target training performance rather than visual appeal. Foreground data is captured by placing sample surgical instruments over a chroma key (a.k.a. green screen) in a controlled environment, thereby making extraction of the relevant image segment straightforward. Multiple lighting conditions and viewpoints can be captured and introduced in the simulation by moving the instruments and camera and modulating the light source. Background data is captured by collecting videos that do not contain instruments. In the absence of pre-existing instrument-free background videos, minimal labeling effort is required, just to select frames that do not contain surgical instruments from videos of surgical interventions freely available online. We compare different methods to blend instruments over tissue and propose a novel data augmentation approach that takes advantage of the plurality of options. We show that by training a vanilla U-Net on semi-synthetic data only and applying a simple post-processing, we are able to match the results of the same network trained on a publicly available manually labeled real dataset

An automatic gait analysis pipeline for wearable sensors: a pilot study in Parkinson’s disease

The use of wearable sensors allows continuous recordings of physical activity from participants in free-living or at-home clinical studies. The large amount of data collected demands automatic analysis pipelines to extract gait parameters that can be used as clinical endpoints. We introduce a deep learning-based automatic pipeline for wearables that processes tri-axial accelerometry data and extracts gait events—bout segmentation, initial contact (IC), and final contact (FC)—from a single sensor located at either the lower back (near L5), shin or wrist. The gait events detected are posteriorly used for gait parameter estimation, such as step time, length, and symmetry. We report results from a leave-one-subject-out (LOSO) validation on a pilot study dataset of five participants clinically diagnosed with Parkinson’s disease (PD) and six healthy controls (HC). Participants wore sensors at three body locations and walked on a pressure-sensing walkway to obtain reference gait data. Mean absolute errors (MAE) for the IC events ranged from 22.82 to 33.09 milliseconds (msecs) for the lower back sensor while for the shin and wrist sensors, MAE ranges were 28.56–64.66 and 40.19–72.50 msecs, respectively. For the FC-event detection, MAE ranges were 29.06–48.42, 40.19–72.70 and 36.06–60.18 msecs for the lumbar, wrist and shin sensors, respectively. Intraclass correlation coefficients, ICC(2,k), between the estimated parameters and the reference data resulted in good-to-excellent agreement (ICC ≥ 0.84) for the lumbar and shin sensors, excluding the double support time (ICC = 0.37 lumbar and 0.38 shin) and swing time (ICC = 0.55 lumbar and 0.59 shin). The wrist sensor also showed good agreements, but the ICCs were lower overall than for the other two sensors. Our proposed analysis pipeline has the potential to extract up to 100 gait-related parameters, and we expect our contribution will further support developments in the fields of wearable sensors, digital health, and remote monitoring in clinical trials

Insects associated to yellow pitaya crops (Selenicereus megalanthus) on Inzá Cauca, Colombia.

In the municipality of Inzá (Cauca, Colombia) the profitability of the main economic resource, coffee crops, decreased. As an alternative, yellow pitaya crops were established, but knowledge of the possible phytosanitary limitations for this crop in this region was absent. This study presents the entomofauna associated with yellow pitaya crops in three plantations of Inzá that contrast in agronomic and landscape features. Direct sampling of the insects found on each structure of the plant and sampling was done using entomological nets from directly under the plants to 50 cm away. Abiotic factors and indices of ecological diversity were considered. With direct sampling, 58 families were recognized; of these, Formicidae (n = 22), Coreidae (n = 11) and Lonchaeidae (n = 7) were most prevalent. Five orders and 56 families of insects were collected using entomological nets. The plants with the highest density of cladodes favored the Lonchaeidae (τ = 1.0; P = 0.00), Formicidae (τ = 1.00; P = 0.007) and Cicadellidae (τ = 1.00; P = 0.00) families. Insects from the Lonchaeidae family benefitted from the positive correlation between rainfall (τ = 1.00; P = 0.00) and temperature (τ = 1.00; P = 0.00). Damage associated with Dasiops spp. (Diptera) was not found. The presence of D. saltans was not confirmed because all the specimens collected were males. The Margalef (DMg) = 7.42; Shannon-Wiener (H ‘) = 3.217 (Alpha) and Whittaker (βw) = 1.0; and Routledge (βr) = 0.25 (Beta) diversity indices represented a large variety of beneficial insect families. A system of regular entomological surveillance and technical support should be established for producers with aim of providing long-term economic viability for this crop in the municipality

Relativistic proton production at the sun in the October 28th, 2003 solar event

Abstract In order to infer about the origin of solar relativistic particles (SRP) from the particle event of October 28th, 2003, we proceed to do a confrontation of the experimental energy spectra with the theoretical spectra derived from a transport equation for stochastic acceleration. On basis to a two-source model of particle generation, one of which is associated with an expanding magnetic loop, we solve the transport equation including adiabatic losses simultaneously with the stochastic acceleration process. The confrontation shows that there are two different populations during this event, one of which, the so-called ''delayed component'' may be correctly described by stochastic acceleration, but not the so-called ''prompt component''. We found that the required acceleration efficiencies turn to be very high, so that for this particular event, adiabatic cooling is practically negligible as far as the energy spectrum is concerned. Qualitative inferences point toward a dominated Alfven accelerating turbulence. Our results provide a new support to the existence of two relativistic particle populations in some solar relativistic particle events

P-P Total Cross Sections at VHE from Accelerator Data

Comparison of P-P total cross-sections estimations at very high energies - from accelerators and cosmic rays - shows a disagreement amounting to more than 10 %, a discrepancy which is beyond statistical errors. Here we use a phenomenological model based on the Multiple-Diffraction approach to successfully describe data at accelerator energies. The predictions of the model are compared with data On the basis of regression analysis we determine confident error bands, analyzing the sensitivity of our predictions to the employed data for extrapolation. : using data at 546 and 1.8 TeV, our extrapolations for p-p total cross-sections are only compatible with the Akeno cosmic ray data, predicting a slower rise with energy than other cosmic ray results and other extrapolation methods. We discuss our results within the context of constraints in the light of future accelerator and cosmic ray experimental results.Comment: 26 pages aqnd 11 figure

Cryo-EM and the elucidation of new macromolecular structures: Random Conical Tilt revisited

Cryo-Electron Microscopy (cryo-EM) of macromolecular complexes is a fundamental structural biology technique which is expanding at a very fast pace. Key to its success in elucidating the three-dimensional structure of a macromolecular complex, especially of small and non-symmetric ones, is the ability to start from a low resolution map, which is subsequently refined with the actual images collected at the microscope. There are several methods to produce this first structure. Among them, Random Conical Tilt (RCT) plays a prominent role due to its unbiased nature (it can create an initial model based on experimental measurements). In this article, we revise the fundamental mathematical expressions supporting RCT, providing new expressions handling all key geometrical parameters without the need of intermediate operations, leading to improved automation and overall reliability, essential for the success of cryo-EM when analyzing new complexes. We show that the here proposed RCT workflow based on the new formulation performs very well in practical cases, requiring very few image pairs (as low as 13 image pairs in one of our examples) to obtain relevant 3D maps.We thank Dr. Llorca for his support during the acquisition of the C3b images and Dr. Shaikh for his support in the use of Spider for the RCT reconstructions. The authors would like to acknowledge economical support from the Spanish Ministry of Economy and Competitiveness through grants AIC-A-2011-0638 and BIO2013-44647-R, the Comunidad de Madrid through grant CAM (S2010/BMD-2305), as well as a postdoctoral Juan de la Cierva grant with reference JCI-2011-10185 to Javier Vargas. Vahid Abrishami is a holder of La Caixa scholarship and C.O.S. Sorzano is recipient of a Ramon y Cajal fellowship