Draft genome sequences of two Xanthomonas vesicatoria strains from the Balkan peninsula

Xanthomonas vesicatoria causes bacterial spot disease of pepper and tomato plants. We report here the first genome sequences of X. vesicatoria strains that have been isolated from pepper plants. These data will be used for comparative genomics and will allow the development of new detection and typing tools for epidemiological surveillance

Differentiation of Xanthomonas

During the last 20 years, the causative agents of bacterial spot of tomato and pepper have been subjected to many studies and reclassifications. According to the current data, the species are four (X. euvesicatoria, X. vesicatoria, X. gardneri, and X. perforans) and cause similar symptoms in plants but possess different phenotypic properties. This work provides the full metabolic characteristics obtained by Biolog system of bacterial spot’s xanthomonads based on a large selection of strains from different vegetable-producing regions of Bulgaria with accent on their major differentiating properties which could be used for species differentiation by metabolic profiles. The results are compared to the data available in the literature in order to clarify the strong features of each species and distinguish the variable ones. Simple characteristics like amylase activity and utilization of cis-aconitate cannot serve alone for differentiation

Lukanka, a Semi-Dried Fermented Traditional Bulgarian Sausage: Role of the Bacterial Cultures in its Technological, Safety and Beneficial Characteristics

Background: Production of different fermented meat products is a well-known practice done in different European countries since ancient times. Fermentation of primary materials and/or smoking and salting processes are part of the preservation processes and is important for the formation of final products which is inherent in South European countries. Originally, fermentation of meat products is intended for preservation and safe storage for long periods of time. However, nowadays, gastronomical properties of fermented meat products are essential in obtaining specific flavor, odor, color and structure of the sausages which consumers highly prefer. Emphasis is given on gastronomic characteristics, which results from the various combination of raw meat, specific spices and the natural microbiota or conducted fermentation processes by application of specific starter cultures. Seven bacterial genera (Lactobacillus, Leuconostoc, Staphylococcus, Enterococcus, Lactococcus, Micrococcus and Streptococcus) are commonly used as meat starter cultures. Complex fermentation processes that occur during the ripening of the fermented meat products are the results of the interaction between bacterial starter cultures, remaining enzymes in the muscle and fat tissue and available bacterial enzymes. Objective: The present overview aims to provide information related to the characterization of the specific microbiota associated with lukanka, a naturally-fermented semi-dried Bulgarian sausage. What is the specificity of its fermentation processes; how do different starter and indigenous meat microbiota interfere to form specific final products; what is the role of starter and adjunct cultures in the safety of the products; how is the Bulgarian lukanka classified in the perspective of other Mediterranean dry fermented sausages? These are some of the questions that this review will discuss

ANTIMICROBIAL ACTIVITY OF EXTRACTS FROM IN VIVO AND IN VITRO PROPAGATED LAMIUM ALBUM L. PLANTS

The antimicrobial activity of 18 different extracts from in vivo and in vitro grown L. album L. plants was evaluated against clinical bacteria and yeasts using the well diffusion method. All the used extracts demonstrated antibacterial activity, whereas only the water extracts from leaves (in vivo) possessed antifungal activity against Candida albicans NBIMCC 72 and Candida glabrata NBIMCC 8673 (14 and 20 mm diameter of inhibition zones and MIC 10 mg/ml, respectively). The methanol and ethanol extracts obtained from the in vitro propagated plants had a broader spectrum of antibacterial activity than those from in vivo plants, while the opposite tendency was observed for the chloroform extracts. All tested flower extracts possessed antimicrobial activity. The chloroform extract from in vivo flowers demonstrated the highest activity against E. faecalis NBIMCC 3915, S. aureus NBIMCC 3703, P. hauseri NBIMCC 1339 and P. aeruginosa NBIMCC 3700 (22 mm, 13 mm, 11 mm, 23 mm zone diameter of inhibition and MIC 0.313 mg/ml, respectively). The water extracts from leaves (both in vivo and in vitro) possessed higher antibacterial activity than extract from flowers. The obtained results showed that both in vivo and in vitro propagated L. album L. could be used as a source of antibacterial substances

Draft Genome Sequences of Two Xanthomonas euvesicatoria Strains from the Balkan Peninsula

International audienceWe report the draft genome sequences of two Xanthomonas euvesicatoria strains from the Balkan Peninsula, which were isolated from symptomatic pepper plants. The availability of these genome sequences will facilitate the development of modern genotyping assays for X. euvesicatoria strains and to define targets for resistance breeding

Draft Genome Sequences of Two Xanthomonas vesicatoria Strains from the Balkan Peninsula

International audienceXanthomonas vesicatoria causes bacterial spot disease of pepper and tomato plants. We report here the first genome sequences of X. vesicatoria strains that have been isolated from pepper plants. These data will be used for comparative genomics and will allow the development of new detection and typing tools for epidemiological surveillance

Phenotypic and Genotypic Characterization of Newly Isolated <i>Xanthomonas euvesicatoria</i>-Specific Bacteriophages and Evaluation of Their Biocontrol Potential

Bacteriophages have greatly engaged the attention of scientists worldwide due to the continuously increasing resistance of phytopathogenic bacteria to commercially used chemical pesticides. However, the knowledge regarding phages is still very insufficient and must be continuously expanded. This paper presents the results of the isolation, characterization, and evaluation of the potential of 11 phage isolates as natural predators of a severe phytopathogenic bacterium—Xanthomonas euvesicatoria. Phages were isolated from the rhizosphere of tomato plants with symptoms of bacterial spot. The plaque morphology of all isolates was determined on a X. euvesicatoria lawn via a plaque assay. Three of the isolates were attributed to the family Myoviridae based on TEM micrographs. All phages showed good long-term viability when stored at 4 °C and −20 °C. Three of the phage isolates possessed high stability at very low pH values. Fifty-five-day persistence in a soil sample without the presence of the specific host and a lack of lytic activity on beneficial rhizosphere bacteria were found for the phage isolate BsXeu269p/3. The complete genome of the same isolate was sequenced and analyzed, and, for the first time in this paper, we report a circular representation of a linear but circularly permuted phage genome among known X. euvesicatoria phage genomes

Evaluation of metallo-beta-lactamase production in multiple antibiotic-resistant Pseudomonas spp. and Acinetobacter baumannii strains

This study aimed to evaluate the metallo-beta-lactamase (MBL) production in Pseudomonas spp. and Acinetobacter baumannii using phenotypic and genotypic methods and to determine the most appropriate phenotypic method. The study included 55 Pseudomonas spp. (53 Pseudomonas aeruginosa, 1 P. fluorescens and 1 P. putida) and 33 A. baumannii isolates which were resistant to imipenem (IMP) and/or meropenem (MEM). Six phenotypic and one genotypic (real-time polymerase chain reaction [RT-PCR]) methods were used. According to the phenotypic tests, the rates of MBL-positive Pseudomonas spp. and A. baumannii were, respectively: 25.5% and 39.4% by the gradient test; 21.8% and 21.2% by the Rosco rapid CARB screen test; 9.1% and 21.2% by the modified Hodge test (MHT); 32.7% and 66.7% by the combined EDTA disk diffusion test; 56.4% and 100% by IMP + EDTA and 49.0% and 72.7% by MEM + EDTA and 9.1% and 3.0% by IMP + dipicolinic acid (DPA) for the Rosco MBL confirm test; 36.4% and 6.1% by IMP + DPA and 54.5% and 6.1% MEM + DPA for the double disk synergy test. MBL genes were detected only in three Pseudomonas spp. (blaIMP in two P. aeruginosa isolates and blaVIM in a P. fluorescens isolate). For Pseudomonas spp., the MBL positivity rate did not significantly differ between the RT-PCR and MHT and between the RT-PCR and Rosco MBL confirm test (with IMP + DPA) (p > 0.10). In conclusion, the Rosco MBL confirm test (with IMP + DPA) phenotypically predicted the MBL positivity most closely to the RT-PCR method for both Pseudomonas spp. and A. baumannii isolates

Molecular Epidemiology of Xanthomonas euvesicatoria Strains from the Balkan Peninsula Revealed by a New Multiple-Locus Variable-Number Tandem-Repeat Analysis Scheme

Bacterial spot of pepper and tomato is caused by at least three species of Xanthomonas, among them two pathovars of Xanthomonas euvesicatoria, which are responsible for significant yield losses on all continents. In order to trace back the spread of bacterial spot pathogens within and among countries, we developed the first multilocus variable number of tandem repeat analyses (MLVA) scheme for pepper- and tomato-pathogenic strains of X. euvesicatoria. In this work, we assessed the repeat numbers by DNA sequencing of 16 tandem repeat loci and applied this new tool to analyse a representative set of 88 X. euvesicatoria pepper strains from Bulgaria and North Macedonia. The MLVA-16 scheme resulted in a Hunter–Gaston Discriminatory Index (HGDI) score of 0.944 and allowed to resolve 36 MLVA haplotypes (MTs), thus demonstrating its suitability for high-resolution molecular typing. Strains from the different regions of Bulgaria and North Macedonia were found to be widespread in genetically distant clonal complexes or singletons. Sequence types of the variable number of tandem repeats (VNTR) amplicons revealed cases of size homoplasy and suggested the coexistence of different populations and different introduction events. The large geographical distribution of MTs and the existence of epidemiologically closely related strains in different regions and countries suggest long dispersal of strains on pepper in this area. Keywords: bacterial spot; genetic diversity; molecular typing; pepper; tomato 1. Introduction Bacterial spot, which is caused by at least three Xanthomonas species, is a threa