43 research outputs found
Natural selection supports escape from concerted evolution of a recently duplicated CEACAM1 paralog in the ruminant CEA gene family
Concerted evolution is often observed in multigene families such as the CEA gene family. As a result, sequence similarity of paralogous genes is significantly higher than expected from their evolutionary distance. Gene conversion, a "copy paste" DNA repair mechanism that transfers sequences from one gene to another and homologous recombination are drivers of concerted evolution. Nevertheless, some gene family members escape concerted evolution and acquire sufficient sequence differences that orthologous genes can be assigned in descendant species. Reasons why some gene family members can escape while others are captured by concerted evolution are poorly understood. By analyzing the entire CEA gene family in cattle (Bos taurus) we identified a member (CEACAM32) that was created by gene duplication and cooption of a unique transmembrane domain exon in the most recent ancestor of ruminants. CEACAM32 shows a unique, testis-specific expression pattern. Phylogenetic analysis indicated that CEACAM32 is not involved in concerted evolution of CEACAM1 paralogs in ruminants. However, analysis of gene conversion events revealed that CEACAM32 is subject to gene conversion but remarkably, these events are found in the leader exon and intron sequences but not in exons coding for the Ig-like domains. These findings suggest that natural selection hinders gene conversion affecting protein sequences of the mature protein and thereby support escape of CEACAM32 from concerted evolution
PrevalĂȘncia de anticorpos anti-Toxoplasma gondii e anti-Neospora caninum em suĂnos do Nordeste do Brasil
A serologic survey was conducted among 130 swine slaughtered in the public slaughterhouse of the city of Patos, ParaĂba State, Northeastern Brazil, to determine the prevalence of anti-Toxoplasma gondii and anti-Neospora caninum antibodies, and to verify possible associations between sex of the animals and antibody prevalence. The sera were analyzed by indirect antibody tests, considering 1:64 (T. gondii) and 1:50 (N. caninum) dilutions as cut-off points. The prevalence of anti-T. gondii antibodies was 36.2% (47/130) (95% CI = 27.9 - 45.0%) with reciprocal titers ranging from 64 to 2,048, and of anti-N. caninum antibodies was 3.1% (4/130) (95% CI = 0.8 - 7.7%) with reciprocal titers ranging from 50 to 6,400. Three of the four N. caninum-positive samples were also positive for T. gondii antibodies. All Neospora and Toxoplasma IFAT-positive animals were also positive for confirmatory immunoblotting techniques using total and purified N. caninum and T. gondii tachyzoite antigens, i.e., p38 (NcSRS2) and p30 (TgSAG1). There was no association between sex of animals and prevalence of anti-T. gondii and anti-N. caninum antibodies. This is the first indication of N. caninum natural infection in pigs from Brazil.Foi conduzido um estudo sorolĂłgico em 130 suĂnos abatidos no matadouro pĂșblico do municĂpio de Patos, Estado da ParaĂba, Nordeste do Brasil, com o objetivo de determinar a prevalĂȘncia de anticorpos anti-Toxoplasma gondii e anti-Neospora caninum, e verificar possĂveis associaçÔes entre o sexo dos animais e a prevalĂȘncia de anticorpos. Os soros foram analisados pelo testes de imunofluorescĂȘncia indireta, considerando as diluiçÔes 1:64 (T. gondii) e 1:50 (N. caninum) como pontos de corte. A prevalĂȘncia de anticorpos anti-T. gondii foi de 36,2% (47/130) (IC 95% = 27,9 - 45,0%) com tĂtulos variando de 64 a 2.048, e anti-N. caninum de 3,1% (4/130) (IC 95% = 0,8 - 7,7%) com tĂtulos variando de 50 a 6.400. TrĂȘs das quatro amostras positivas para anticorpos anti-N. caninum tambĂ©m foram positivas para anticorpos anti-T. gondii. Todos os animais positivos na RIFI para Neospora e Toxoplasma tambĂ©m foram positivos nas tĂ©cnicas confirmatĂłrias de immunoblotting usando antĂgenos totais e purificados de taquizoĂtos de N. caninum e T. gondii, ou seja, p38 (NcSRS2) e p30 (TgSAG1). NĂŁo houve associação entre o sexo dos animais e a prevalĂȘncia de anticorpos anti-T. gondii e anti-N. caninum. Essa Ă© a primeira indicação de infecção natural por N. caninum em suĂnos do Brasil.Conselho Nacional de Pesquisa (CNPq
Analysis of Clonal Type-Specific Antibody Reactions in Toxoplasma gondii Seropositive Humans from Germany by Peptide-Microarray
BACKGROUND: Different clonal types of Toxoplasma gondii are thought to be associated with distinct clinical manifestations of infections. Serotyping is a novel technique which may allow to determine the clonal type of T. gondii humans are infected with and to extend typing studies to larger populations which include infected but non-diseased individuals. METHODOLOGY: A peptide-microarray test for T. gondii serotyping was established with 54 previously published synthetic peptides, which mimic clonal type-specific epitopes. The test was applied to human sera (nâ=â174) collected from individuals with an acute T. gondii infection (nâ=â21), a latent T. gondii infection (nâ=â53) and from T. gondii-seropositive forest workers (nâ=â100). FINDINGS: The majority (nâ=â124; 71%) of all T. gondii seropositive human sera showed reactions against synthetic peptides with sequences specific for clonal type II (type II peptides). Type I and type III peptides were recognized by 42% (nâ=â73) or 16% (nâ=â28) of the human sera, respectively, while type II-III, type I-III or type I-II peptides were recognized by 49% (nâ=â85), 36% (nâ=â62) or 14% (nâ=â25) of the sera, respectively. Highest reaction intensities were observed with synthetic peptides mimicking type II-specific epitopes. A proportion of the sera (nâ=â22; 13%) showed no reaction with type-specific peptides. Individuals with acute toxoplasmosis reacted with a statistically significantly higher number of peptides as compared to individuals with latent T. gondii infection or seropositive forest workers. CONCLUSIONS: Type II-specific reactions were overrepresented and higher in intensity in the study population, which was in accord with genotyping studies on T. gondii oocysts previously conducted in the same area. There were also individuals with type I- or type III-specific reactions. Well-characterized reference sera and further specific peptide markers are needed to establish and to perform future serotyping approaches with higher resolution
Peptide-microarray-based serological diagnosis and typing of Toxoplasma gondii infections in humans and cats from Germany
Mehrere Studien berichten ĂŒber Hinweise, dass schwerwiegende
InfektionsverlÀufe bei Menschen und Tieren mit bestimmten Genotypen und
klonalen Linien von T. gondii in Verbindung stehen. Es ist daher wichtig,
Kenntnisse ĂŒber die Verbreitung unterschiedlicher Genotypen und Linien von T.
gondii zu erlangen. Mithilfe dieser Kenntnisse könnten InfektionsgefÀhrdungen
fĂŒr Menschen und Tiere besser abgeschĂ€tzt werden. Hinweise auf die Genotypen
von T. gondii, mit denen Menschen oder Tiere infiziert sind, könnten in
Zukunft frĂŒhzeitig RĂŒckschlĂŒsse auf den weiteren Infektionsverlauf liefern und
gegebenenfalls eine Optimierung der Behandlung gestatten. Die Ergebnisse der
in dieser Dissertation zusammengefassten Studien zeigen, dass Peptid-
Mikroarrays geeignete Testsysteme fĂŒr die serologische Diagnose und
Typisierung von T. gondii-Infektionen bei Menschen und Katzen darstellen. Mit
Hilfe von Peptid-Mikroarrays und Seren experimentell und natĂŒrlich infizierter
Katzen konnte erstmals belegt werden, dass Katzen in der Lage sind, eine
typspezifische IgGAntwort gegen T. gondii der klonalen Typen I, II, und III zu
entwickeln. Nach Validierung wurden 27 Peptide selektiert, die fĂŒr eine
Serotypisierung der klonalen T. gondii-Infektionen verwendet wurden. Aufgrund
frĂŒherer Studien konnte davon ausgegangen werden, dass die meisten
Zwischenwirte in Deutschland gegenĂŒber T. gondii des klonalen Typs II
exponiert sind. Jedoch gab es keine Information zum Vorkommen
unterschiedlicher T. gondii-Genotypen bei Menschen und nur im begrenzten
Umfang Daten zum Vorkommen unterschiedlicher T. gondii-Typen bei Hauskatzen in
Deutschland. Die vorliegende Arbeit zeigt, dass positive Typ-II-spezifische
Peptidreaktionen bei serologisch positiven Menschen und Katzen signifikant
ĂŒberreprĂ€sentiert sind. Die Reaktionen gegen Typ-II-spezifische Peptide waren
signifikant stÀrker als die Reaktionen gegen Peptide anderer SpezifitÀten. Die
Ergebnisse weisen darauf hin, dass die meisten T. gondii-Infektionen bei
Menschen und Hauskatzen in Deutschland durch T. gondii des klonalen Typs II
verursacht werden. Die Studien bestÀtigen die Resultate vorheriger Arbeiten,
in denen hauptsÀchlich Typ II bei den von Katzen in Deutschland
ausgeschiedenen T. gondii-Oozysten nachgewiesen wurde. Da sporulierte Oozysten
von T. gondii eine der wichtigsten Infektionsquellen fĂŒr Zwischenwirte
darstellen, war zu erwarten, dass es hinsichtlich der bei Katzen und Menschen
beobachteten Serotypisierungs-Resultate keine wesentlichen Unterschiede geben
sollte. Die hier durchgefĂŒhrten Arbeiten reprĂ€sentieren eine erste
Serotypisierung von T. gondii- Infektionen bei Menschen in Deutschland und
eine erste bei Katzen weltweit mit Hilfe von Peptid-Mikroarrays. Allerdings
zeigen die Ergebnisse, dass weitere gut validierte typspezifische Peptide
erforderlich sind, um eine spezifischere Serotypisierung zu erreichen. Eine
weitere Validierung mit einer gröĂeren Zahl von gut definierten Seren könnte
das Identifizieren und die Selektion polymorpher Peptide fĂŒr die
Serotypisierung erleichtern. Die in dieser Dissertation zusammengefassten
Studien (Publikation 2, Manuskript 3) zeigen die Anwendbarkeit von
bioinformatischen Verfahren wie âpropensity scaleâ-Algorithmen und die
ABCpred-Methode zur Vorhersage von linearen Epitopen in T. gondii-Antigenen.
Mit der âpropensity scaleâ-Methode wurden neun polymorphe Peptide ausgewĂ€hlt,
die als Teil von einem Peptid-Panel fĂŒr T. gondii Serotypisierung eingesetzt
werden könnten. Mit Hilfe von ABCpred konnten bioinformatisch insgesamt acht
neue lineare Epitope vorhergesagt werden, die sich kĂŒnftig auch als Teil eines
diagnostischen Peptid-Panels einsetzen lassen. Insgesamt wurden in dieser
Studie (Publikation 2) zehn Peptide (acht ABCpredvorhergesagte und zwei aus
der Literatur) mit diagnostischem Potential identifiziert. Durch den Einsatz
dieser Peptide im Peptid-Mikroarray zur serologischen Diagnose der humanen
Toxoplasmose wurde eine diagnostische SensitivitÀt von 69% und SpezifitÀt von
84% erreicht. Diese diagnostischen Parameter sind akzeptabel, aber nicht
optimal. Um bessere diagnostische Eigenschaften des Testsystems erreichen zu
können, ist es notwendig, das Peptid-Panel zu optimieren und nach weiteren
Peptiden mit diagnostischem Potential zu forschen. Die Arbeit zeigt, dass die
Anwendung bioinformatischer Programme zur Epitopvorhersage zusammen mit
Peptid-Mikroarrays geeignete Laborwerkzeuge darstellen, mit denen T. gondii-
Epitope identifiziert werden können, die sich zur serologischen Diagnose oder
Typisierung eignen. Aus Peptiden, die diese Epitope enthalten, wurden
Mikroarray-Tests entwickelt und zur serologischen Typisierung von T. gondii-
Infektionen bei Menschen und Katzen eingesetzt.Several studies reported that certain T. gondii genotypes and clonal lineages
correlate with severe toxoplasmosis in mice and humans. Therefore it may be
important to have information on the prevalence of different T. gondii
genotypes in humans and animals. In future, this information may help to
better estimate the risk of infection for humans and animals. Information on
the genotype of T. gondii an individual human or animal is infected may allow
to conclude on the further development of disease and to optimise treatment.
The results of studies summarized in this cumulative thesis demonstrate that a
peptidemicroarray assay can be used for diagnosis of T. gondii infection and
to detect T. gondii clonal type-specific antibody responses in seropositive
humans and cats. With a peptide microarray and sera from experimentally-
infected and naturally-infected cats it was shown for the first time that cats
are able to mount a clonal type-specific IgG antibody response against T.
gondii. After validation, 27 peptides were selected which were suitable for T.
gondii serotyping in cats. Previous work suggested that individuals in the
study area were mainly exposed to T. gondii clonal type II. However, there was
no information, which clonal type of T. gondii is most prevalent in infected
humans, and there was only limited data about the distribution of T. gondii
types in cats in Germany. The results of this study demonstrate that positive
peptide reactions presenting clonal type II were statistically significantly
overrepresented in the tested human and cat population. The intensity, by
which type II peptides were recognized, was also significantly higher than the
intensity with which peptides of other specificities were detected. The
results suggest that most T. gondii infections in humans and cats were caused
by T. gondii clonal type II in Germany and confirmed previous findings
reporting a pre-dominance of type II in oocysts shed by cats in Germany. Since
sporulated T. gondii oocysts present one of the most important sources of
infection for intermediate hosts, it was expected that there were no major
differences in serotyping results between those for cats and humans. These are
the first peptide microarray-based serotyping studies on T. gondii infections
in humans in Germany and the first in cats worldwide. However, further
carefully validated typespecific peptides are necessary to optimize the
specificity of serotyping. Further validation with a larger number of well-
characterized sera may help to identify and select further polymorphic
peptides with a diagnostic potential. The results summarized in the present
thesis (publication 2, manuscript 3) demonstrate that propensity scale-based
and ABCpred bioinformatic methods are suitable for the in-silico prediction of
linear epitopes on T. gondii antigens. The propensity scale method identified
nine polymorphic epitopes that could be used as part of a peptide panel for T.
gondii serotyping in cats. Using ABCpred, eight novel linear epitopes were
predicted, which could be included in a larger peptide array for diagnosis. A
total of ten peptides with diagnostic potential (eight ABCpred-predicted and
two taken from the literature) were identified in this study (publication 2).
The use of these peptides in a peptide-array revealed an overall diagnostic
sensitivity of 69% and a diagnostic specificity of 84%. These diagnostic
parameters are acceptable, but not optimal. To achieve better diagnostic
properties, it is necessary to identify further epitopes with diagnostic
potential to extend the peptide panel. In conclusion, this study demonstrates
that bioinformatic programs in combination with peptide-microarray represent a
powerful tool for the prediction and analysis of T. gondii linear epitopes
suitable for serotyping or diagnosis. Based on peptides containing these
epitopes peptide microarray tests were developed in the present thesis and
applied or serological typing of T. gondii infections in humans and cats
Species Detection within the Echinococcus granulosus sensu lato Complex by Novel Probe-Based Real-Time PCRs.
Infections with eggs of Echinococcus granulosus sensu lato (s.l.) can cause cystic echinococcosis in intermediate host animals and humans. Upon ingestion of viable eggs, oncospheres hatch from the eggs and subsequently develop into fluid-filled larval cysts, most frequently in the liver or the lungs. The slowly growing cysts progressively interfere with organ function. The risk of infection is determined by the host range of the parasite, its pathogenicity and other epidemiologically relevant parameters, which differ significantly among the five species within the E. granulosus s.l. complex. It is therefore essential to diagnose the correct species within E. granulosus s.l. to help understand specific disease epidemiology and to facilitate effective implementation of control measures. For this purpose, simple, fast and cost-effective typing techniques are needed. We developed quantitative real-time polymerase chain reactions (qPCRs) to target polymorphic regions in the mitochondrial genome of E. granulosus s.l. In a single-step typing approach, we distinguished E. granulosus s.l. members in four epidemiologically relevant subgroups. These were E. granulosus sensu stricto, E. equinus, E. ortleppi and the E. canadensis cluster. The technique also allowed identification and differentiation of these species from other Echinococcus or Taenia taxa for samples isolated from cysts or faeces
Red foxes harbor two genetically distinct, spatially separated Echinococcus multilocularis clusters in Brandenburg, Germany.
BACKGROUND
Alveolar echinococcosis (AE) is a clinically serious zoonosis caused by the fox tapeworm Echinococcus multilocularis. We studied the diversity and the distribution of genotypes of E. multilocularis isolated from foxes in Brandenburg, Germany, and in comparison to a hunting ground in North Rhine-Westphalia.
METHODS
Echinococcus multilocularis specimens from 101 foxes, 91 derived from Brandenburg and 10 derived from North Rhine-Westphalia, were examined. To detect potential mixed infections with different genotypes of E. multilocularis, five worms per fox were analyzed. For genotyping, three mitochondrial markers, namely cytochrome c oxidase subunit 1 (Cox1), NADH dehydrogenase subunit 1 (Nad1), and ATP synthase subunit 6 (ATP6), and the nuclear microsatellite marker EmsB were used. To identify nucleotide polymorphisms, the mitochondrial markers were sequenced and the data were compared, including with published sequences from other regions. EmsB fragment length profiles were determined and confirmed by Kohonen network analysis and grouping of Sammon's nonlinear mapping with k-means clustering. The spatial distribution of genotypes was analyzed by SaTScan for the EmsB profiles found in Brandenburg.
RESULTS
With both the mitochondrial makers and the EmsB microsatellite fragment length profile analyses, mixed infections with different E. multilocularis genotypes were detected in foxes from Brandenburg and North Rhine-Westphalia. Genotyping using the mitochondrial markers showed that the examined parasite specimens belong to the European haplotype of E. multilocularis, but a detailed spatial analysis was not possible due to the limited heterogeneity of these markers in the parasite population. Four (D, E, G, and H) out of the five EmsB profiles described in Europe so far were detected in the samples from Brandenburg and North Rhine-Westphalia. The EmsB profile G was the most common. A spatial cluster of the E. multilocularis genotype with the EmsB profile G was found in northeastern Brandenburg, and a cluster of profile D was found in southern parts of this state.
CONCLUSIONS
Genotyping of E. multilocularis showed that individual foxes may harbor different genotypes of the parasite. EmsB profiles allowed the identification of spatial clusters, which may help in understanding the distribution and spread of the infection in wildlife, and in relatively small endemic areas
Dog Ownership and Risk for Alveolar Echinococcosis, Germany
Human alveolar echinococcosis is caused by the parasite Echinococcus multilocularis, and dog ownership has been identified as a risk factor. We sought to specify the factors of dog ownership underlying this risk by conducting a caseâcontrol study among dog owners in Germany. The analysis revealed an increased odds ratio of â7-fold for dog owners whose dogs roam unattended in fields, 13-fold for dog owners who feed their dogs organic waste daily, 4-fold for dog owners who take their dog to a veterinarian only in case of illness, and 10-fold for dog owners who have never been informed by a veterinarian about the risk for infection. The results highlight the risk for infection associated with various factors of dog ownership and the value of veterinarians informing owners about prevention
Increasing Fatigue Life of 09Mn2Si Steel by Helical Rolling: TheoreticalâExperimental Study on Governing Role of Grain Boundaries
The structure and mechanical properties of the 09Mn2Si high-strength low-alloyed steel after the five-stage helical rolling (HR) were studied. It was revealed that the fine-grained structure had been formed in the surface layer ≈ 1 mm deep as a result of severe plastic strains. In the lower layers, the “lamellar” structure had been formed, which consisted of thin elongated ferrite grains oriented in the HR direction. It was shown that the five-stage HR resulted in the increase in the steel fatigue life by more than 3.5 times under cyclic tension. The highest values of the number of cycles before failure were obtained for the samples cut from the bar core. It was demonstrated that the degree of the elastic energy dissipation in the steel samples under loading directly depended on the area of the grain boundaries as well as on the grain shapes. The fine-grained structure possessed the maximum value of the average torsional energy among all the studied samples, which caused the local material structure transformation and the decrease in the elastic energy level. This improved the crack resistance under the cyclic mechanical loading. The effect of the accumulation of the rotational strain modes at the grain boundaries was discovered, which caused the local structure transformation at the boundary zones. In the fine-grained structure, the formation of grain conglomerates was observed, which increased the values of the specific modulus of the moment of force. This could be mutually compensated due to the small sizes of grains. At the same time, the coarse-grained structures were characterized by the presence of the small number of grains with a high level of the moments of forces at their boundaries. They could result in trans-crystalline cracking
Effect of structural heterogeneity of 17Mn1Si steel on the temperature dependence of impact deformation and fracture
The paper deals with a theoretical and experimental study of the relationship between the microstructural parameters, mechanical properties, and impact deformation and fracture of steels using the example of 17Mn1Si pipe steel. A model for the behavior of a polycrystalline grain conglomerate under impact loading at different temperatures was proposed within a cellular automata framework. It was shown that the intensity of dissipation processes explicitly depends on temperature and these processes play an important role in stress relaxation at the boundaries of structural elements. The Experimental study reveals the relationship between pendulum impact test
temperature and the deformation/fracture energy of the steel. The impact toughness was shown to decrease almost linearly with the decreasing test temperature, which agrees with the fractographic analysis data confirming the increase in the fraction of brittle fracture in this case. It was shown with the aid of the proposed model and numerical simulations that the use of the excitable cellular automata method and an explicit account of test temperature through the possibility of energy release at internal interfaces help to explain the experimentally observed features of impact failure at different temperatures
Increasing Fatigue Life of 09Mn2Si Steel by Helical Rolling: TheoreticalâExperimental Study on Governing Role of Grain Boundaries
The structure and mechanical properties of the 09Mn2Si high-strength low-alloyed steel after the five-stage helical rolling (HR) were studied. It was revealed that the fine-grained structure had been formed in the surface layer â 1 mm deep as a result of severe plastic strains. In the lower layers, the âlamellarâ structure had been formed, which consisted of thin elongated ferrite grains oriented in the HR direction. It was shown that the five-stage HR resulted in the increase in the steel fatigue life by more than 3.5 times under cyclic tension. The highest values of the number of cycles before failure were obtained for the samples cut from the bar core. It was demonstrated that the degree of the elastic energy dissipation in the steel samples under loading directly depended on the area of the grain boundaries as well as on the grain shapes. The fine-grained structure possessed the maximum value of the average torsional energy among all the studied samples, which caused the local material structure transformation and the decrease in the elastic energy level. This improved the crack resistance under the cyclic mechanical loading. The effect of the accumulation of the rotational strain modes at the grain boundaries was discovered, which caused the local structure transformation at the boundary zones. In the fine-grained structure, the formation of grain conglomerates was observed, which increased the values of the specific modulus of the moment of force. This could be mutually compensated due to the small sizes of grains. At the same time, the coarse-grained structures were characterized by the presence of the small number of grains with a high level of the moments of forces at their boundaries. They could result in trans-crystalline cracking