Biodiversity in Eastern Kentucky: Effects of Habitat Change, Surface Top Mining, and Current Reclamation Practices

Biodiversity is a key component in maintaining the valuable ecosystem services that are vital to the way humans interact with and rely on the environment. The Appalachian Region in Eastern North America is one of the most biodiverse temperate broadleaf forests in the world and is home to hundreds of endangered or endemic species. Despite the high biodiversity, the region is also heavily mined, particularly by mountain top removal, causing habitat change and pollution. Current reclamation practices for mined lands are lacking in effective reclamation criterion, and state statutes provide little or no attention to the preservation of biodiversity. Therefore, this study investigated the effect of surface top mining on biodiversity in the Central Appalachian region of Eastern Kentucky using publicly available biodiversity indices and geospatial data analysis at the watershed scale while also examining reclamation effectiveness through interviews with government officials and a meta-analysis of current reclamation research. Fish biodiversity was significantly impacted in areas with high percentages of surface mines. A positive correlation was observed between surface mining and herbaceous, shrub, and barren land cover, suggesting the utilization of the grassland reclamation approach as a primary method of reclamation. Analyses indicated insufficiency in reclamation to support biodiversity in Eastern Kentucky despite policies that outline the process for reclamation being effectively written, suggesting a root cause in lack of enforcement or funding. More stringent land use approval processes and stricter enforcement are needed, along with increased funding for divisions responsible for reclamation to utilize ecologically beneficial reclamation methods that support biodiversity

Ultra Structural Characterisation of Tetherin - a Protein Capable of Preventing Viral Release from the Plasma Membrane

Tetherin is an antiviral restriction factor made by mammalian cells to protect them from viral infection. It prevents newly formed virus particles from leaving infected cells. Its antiviral mechanism appears to be remarkably uncomplicated. In 2 studies published in PLoS Pathogens electron microscopy is used to support the hypothesis that the tethers that link HIV-1 virions to tetherin expressing cells contain tetherin and are likely to contain tetherin alone. They also show that the HIV-1 encoded tetherin antagonist that is known to cause tetherin degradation, Vpu, serves to reduce the amount of tetherin in the particles thereby allowing their release

Trace elements and oxygen isotopes of gem spinels in marble from the Luc Yen - An Phu areas, Yen Bai province, North Vietnam

Trace elements investigated by electron microprobe analysis (EMPA) have been combined with oxygen isotopic composition of pink, red and other colored spinels (blue, purple, brown, orange, lavender) hosted by marbles and found in placers from Luc Yen and An Phu deposits, Yen Bai province, North Vietnam. The deposits are those from Nuoc Ngap, Cong Troi, Bai Son and different placers from the An Phu area. Trace elements such as Fe-Zn-Cr-V in red and pink gem spinels permit to separate those from Cong Troi and those from the others deposits of the An Phu area. Spinels from Cong Troi have low to extremely low Zn ( 500 ppm) and high Fe contents (3,000 to 16,000 ppm) while those from An Phu area are Zn-rich (up to 11,000 ppm). Iron is the dominant element for the other colored spinels whereas Zn, Cr and V contents are extremely variable. The Bai Son blue spinel is Fe-rich (5,000 to 7,200 ppm) with some V (950 to 1,830 ppm), Cr (270 to 480 ppm), Co (240 to 400 ppm) and Ni (550 to 950 ppm). The O-isotope composition of the whole spinels ranges between 12.1 and 24.2‰ (n = 25). Within each deposit, the range of δ18O values for red, pink and colored spinels is usually similar. However, the red and pink spinels from An Phu present two distinct sets of δ18O values, respectively between  13.2 to 17.0‰  (n = 7) and 22.5 δ18O 24.2 (n = 5). Those from Cong Troi are from 14.8 to 17.7‰ (n = 3) and their range overlaps that of An Phu. The use of O-isotopes is not useful for distinguishing between the deposits, but the low to extremely low Zn content of the Cong Trois spinels is a discriminant. The variation of δ18O values (12.1 δ18O 24.2‰) of the whole spinels indicates that the oxygen isotopic compositions of the metamorphic fluids were probably buffered by the local δ18O values of the impure host marbles.ReferencesChauviré B., Rondeau B., Fritsch E., Ressigeac Ph., Devidal J.-L., 2015. Blue spinel from the Luc Yen district of Vietnam. Gems Gemology, 51, 2-17.D'Ippolito V., Andreozzi G.B., Hålenius H., Skogby H., Hametner K., Günther D., 2015. Colour mechanisms in spinel: cobalt and iron interplay for the blue colour. Physics and Chemistry of Minerals, 42, 431-439.Garnier V., 2003. Les gisements de rubis associés aux marbres de l’Asie Centrale et du Sud-est: genèse et caractérisation isotopique. PhD thesis INPL, Nancy, France, 373p.Garnier, V., Ohnenstetter, D., Giuliani, G., Maluski, H., Deloule, E., Phan Trong Trinh, Pham Van Long, Hoang Quang Vinh, 2005. Age and significance of ruby-bearing marbles from the Red River shear zone, northern Vietnam. The Canadian Mineralogist, 43, 1315-1329.Garnier V., Giuliani G., Ohnenstetter D., Fallick A.E., Dubessy J., Banks D., Hoang Quang Vinh, Lhomme Th., Maluski H., Pêcher A., Bakhsh K.A., Pham Van Long, Phan Trong Trinh, Schwarz D., 2008. Marble-hosted ruby deposits from central and Southeast Asia: towards a new genetic model. Ore Geology Reviews, 34, 169-191.Giuliani G., Fallick A.E., Garnier V., France-Lanord Ch., Ohnenstetter D., Schwarz D., 2005. Oxygen isotope composition as a tracer for the origins of rubies and sapphires. Geology, 33(4), 249-252.Giuliani G., Fallick A.E., Boyce A.J., Pardieu V., Pham Van Long, 2017. Pink and red spinels in marble: trace elements, oxygen isotopes, and sources. The Canadian Mineralogist, 55, 743-761.Hauzenberger C.A., Häeger T., Baumgartner L.P., Hofmeister W., 2001. High-grade metamorphism and stable isotope geochemistry of N-Vietnamese gem-bearing rocks. In: Proceedings of the Workshop on gems and minerals of Vietnam, Hanoi, 124-138.Hauzenberger C.A., Bagola C., Häeger T., Muellen C., Nguyen Ngoc Khoi, Le Thi Thu Huong, 2014. Mineralogy and petrology of the An Phu marble hosted spinel and corundum deposit, Luc Yen, N-Vietnam. In Proceedings of the 4th International Gem and Jewelry Conference, Chiang Mai, Thailand, 76-78.Kleišmantas A., Daukšyte A., 2016. The influence of Vietnam and Sri Lanka spinel mineral chemical elements on colour. Chemija, 27, 45-51.Kretz R., 1983. Symbols for rock-forming minerals. American Mineralogist, 68, 277-279.Le Thi Thu Huong, Häeger T., Hofmeister W., Hauzenberger C., Schwarz D., Pham Van Long, Wehmeister U., Nguyen Ngoc Khoi, Nguy Tuyet Nhung, 2012. Gemstones from Vietnam: An update. Gems Gemology, 48, 158-176.Malsy A., Klemm L., 2010. Distinction of gem spinels from the Himalayan mountain belt. Chimia, 64(10), 741-746.Malsy A., Karampelas S., Schwarz D., Klemm L., Armbruster T., Tuan Do Anh, 2012. Orangey-red to orangey-pink gem spinels from a new deposit at Lang Chap (Tan Huong - Truc Lau), Vietnam. The Journal of Gemmology, 33, 19-27.Pham Van Long, Hoang Quang Vinh, Garnier V., Giuliani G., Ohnenstetter D., Lhomme,T., Schwarz D., Fallick A.E., Dubessy J., Phan Trong Trinh, 2004. Gem corundum deposits in Vietnam. 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The RING-CH ligase K5 antagonizes restriction of KSHV and HIV-1 particle release by mediating ubiquitin-dependent endosomal degradation of tetherin

Tetherin (CD317/BST2) is an interferon-induced membrane protein that inhibits the release of diverse enveloped viral particles. Several mammalian viruses have evolved countermeasures that inactivate tetherin, with the prototype being the HIV-1 Vpu protein. Here we show that the human herpesvirus Kaposi's sarcoma-associated herpesvirus (KSHV) is sensitive to tetherin restriction and its activity is counteracted by the KSHV encoded RING-CH E3 ubiquitin ligase K5. Tetherin expression in KSHV-infected cells inhibits viral particle release, as does depletion of K5 protein using RNA interference. K5 induces a species-specific downregulation of human tetherin from the cell surface followed by its endosomal degradation. We show that K5 targets a single lysine (K18) in the cytoplasmic tail of tetherin for ubiquitination, leading to relocalization of tetherin to CD63-positive endosomal compartments. Tetherin degradation is dependent on ESCRT-mediated endosomal sorting, but does not require a tyrosine-based sorting signal in the tetherin cytoplasmic tail. Importantly, we also show that the ability of K5 to substitute for Vpu in HIV-1 release is entirely dependent on K18 and the RING-CH domain of K5. By contrast, while Vpu induces ubiquitination of tetherin cytoplasmic tail lysine residues, mutation of these positions has no effect on its antagonism of tetherin function, and residual tetherin is associated with the trans-Golgi network (TGN) in Vpu-expressing cells. Taken together our results demonstrate that K5 is a mechanistically distinct viral countermeasure to tetherin-mediated restriction, and that herpesvirus particle release is sensitive to this mode of antiviral inhibition

Cotrimoxazole reduces systemic inflammation in HIV infection by altering the gut microbiome and immune activation

Wellcome TrustCanadian Institutes of Health ResearchMedical Research CouncilDepartment for International Development under MRC/DFID Concordat agreement and EDCTP2 programme supported by the European UnionMRC Clinical Trials Unit at UC

HIV-1 Vpu Blocks Recycling and Biosynthetic Transport of the Intrinsic Immunity Factor CD317/Tetherin To Overcome the Virion Release Restriction

The intrinsic immunity factor CD317 (BST-2/HM1.24/tetherin) imposes a barrier to HIV-1 release at the cell surface that can be overcome by the viral protein Vpu. Expression of Vpu results in a reduction of CD317 surface levels; however, the mechanism of this Vpu activity and its contribution to the virological antagonism are incompletely understood. Here, we characterized the influence of Vpu on major CD317 trafficking pathways using quantitative antibody-based endocytosis and recycling assays as well as a microinjection/microscopy-based kinetic de novo expression approach. We report that HIV-1 Vpu inhibited both the anterograde transport of newly synthesized CD317 and the recycling of CD317 to the cell surface, while the kinetics of CD317 endocytosis remained unaffected. Vpu trapped trafficking CD317 molecules at the trans-Golgi network, where the two molecules colocalized. The subversion of both CD317 transport pathways was dependent on the highly conserved diserine S52/S56 motif of Vpu; however, it did not require recruitment of the diserine motif interactor and substrate adaptor of the SCF-E3 ubiquitin ligase complex, β-TrCP. Treatment of cells with the malaria drug primaquine resulted in a CD317 trafficking defect that mirrored that induced by Vpu. Importantly, primaquine could functionally replace Vpu as a CD317 antagonist and rescue HIV-1 particle release

SIV Nef Proteins Recruit the AP-2 Complex to Antagonize Tetherin and Facilitate Virion Release

Lentiviral Nef proteins have multiple functions and are important for viral pathogenesis. Recently, Nef proteins from many simian immunodefiency viruses were shown to antagonize a cellular antiviral protein, named Tetherin, that blocks release of viral particles from the cell surface. However, the mechanism by which Nef antagonizes Tetherin is unknown. Here, using related Nef proteins that differ in their ability to antagonize Tetherin, we identify three amino-acids in the C-terminal domain of Nef that are critical specifically for its ability to antagonize Tetherin. Additionally, divergent Nef proteins bind to the AP-2 clathrin adaptor complex, and we show that residues important for this interaction are required for Tetherin antagonism, downregulation of Tetherin from the cell surface and removal of Tetherin from sites of particle assembly. Accordingly, depletion of AP-2 using RNA interference impairs the ability of Nef to antagonize Tetherin, demonstrating that AP-2 recruitment is required for Nef proteins to counteract this antiviral protein

Recent Trends in Monitoring of European Water Framework Directive Priority Substances Using Micro-Sensors: A 2007–2009 Review

This review discusses from a critical perspective the development of new sensors for the measurement of priority pollutants targeted in the E.U. Water Framework Directive. Significant advances are reported in the paper and their advantages and limitations are also discussed. Future perspectives in this area are also pointed out in the conclusions. This review covers publications appeared since December 2006 (the publication date of the Swift report). Among priority substances, sensors for monitoring the four WFD metals represent 81% of published papers. None of analyzed publications present a micro-sensor totally validated in laboratory, ready for tests under real conditions in the field. The researches are mainly focused on the sensing part of the micro-sensors. Nevertheless, the main factor limiting micro-sensor applications in the environment is the ruggedness of the receptor towards environmental conditions. This point constitutes the first technological obstacle to be overcome for any long-term field tests

Completion of Hepatitis C Virus Replication Cycle in Heterokaryons Excludes Dominant Restrictions in Human Non-liver and Mouse Liver Cell Lines

Hepatitis C virus (HCV) is hepatotropic and only infects humans and chimpanzees. Consequently, an immunocompetent small animal model is lacking. The restricted tropism of HCV likely reflects specific host factor requirements. We investigated if dominant restriction factors expressed in non-liver or non-human cell lines inhibit HCV propagation thus rendering these cells non-permissive. To this end we explored if HCV completes its replication cycle in heterokaryons between human liver cell lines and non-permissive cell lines from human non-liver or mouse liver origin. Despite functional viral pattern recognition pathways and responsiveness to interferon, virus production was observed in all fused cells and was only ablated when cells were treated with exogenous interferon. These results exclude that constitutive or virus-induced expression of dominant restriction factors prevents propagation of HCV in these cell types, which has important implications for HCV tissue and species tropism. In turn, these data strongly advocate transgenic approaches of crucial human HCV cofactors to establish an immunocompetent small animal model