Development of screening technique for artificial creation of false smut in rice

False smut (Ustilaginoidea virens (Cooke) Takahashi) of rice is an emerging disease and a potential threat to rice growers in different countries due to reduction in yield, quality and production of mycotoxins. Development and cultivation of resistant varieties is desirable approach for its management. Different inoculation techniques viz. spray inoculation, syringe inoculation and dusting method were evaluated for creating artificial epiphytotic conditions in susceptible variety PR116 under natural as well as artificially provided humidity conditions. Spray inoculation method produced more number of smut balls per plant (3.21) and per cent infected panicles (33.44%) followed by syringe inoculation (2.00 and 26.57%, respectively) and dusting method (0.33 and 6.67%, respectively). However, syringe inoculation method produced more spikelet sterility (14.82%) in rice panicles. More disease occurrence was reported in plants provided with artificial humidity after inoculations (51.12% infected panicles) than the plants grown under natural conditions (13.33% infected panicles). Late transplanted crop developed higher disease severity (18.17% infected panicles and 3.34 smut balls/plant) which might be attributed by slight decrease in temperature and increase in relative humidity conditions (up to 88% RH) at time of infection from boot to early flowering stage of the rice crop

Dimensional Errors Due to Overhanging Features in Laser Powder Bed Fusion Parts Made of Ti-6Al-4V

The rise in popularity of Additive Manufacturing technologies and their increased adoption for manufacturing have created a requirement for their fast development and maturity. However,there is still room for improvement when compared with conventional manufacturing in terms of the predictability, quality, and robustness. Statistical analysis has proven to be an excellent tool for developing process knowledge and optimizing different processes efficiently and effectively.This paper uses a novel method for printing overhanging features in Ti-6Al-4V metal parts, by varying process parameters only within the down-facing area, and establishes a methodology for predicting dimensional errors in flat 45◦down-facing surfaces. Using the process parameters laser power, scan speed, scan spacing, scan pattern, and layer thickness, a quadratic regression equation is developed and tested. An Analysis of variance (ANOVA) analysis concluded that, within the down-facing area,the laser power is the most significant process parameter, followed by the layer thickness and scans peed. Comparatively, the scanning pattern is determined to be insignificant, which is explained by the small down-facing area where the various scanning patterns play no role. This paper also discusses the interaction effects between parameters. Some thoughts on the next steps to be taken for further validation are discussed

Effect of Process Parameters on the Generated Surface Roughness of Down-Facing Surfaces in Selective Laser Melting

Down-facing surfaces are one of the most challenging features in metal parts produced by laser powder bed fusion (LPBF). A combination of reasons, primary of which are residual stresses and overheating cause these features to have the worst surface finish and dimensional accuracy of all LPBF surfaces. In order to examine this phenomenon, a Design of Experiments (DoE) study is conducted for three different inclination angles, namely 45°, 35° and 25° and for two different layer thicknesses of 60 µm and 90 µm. The results from the DoE are used to establish quadratic regression equations that can be used to predict the quality marks of surface roughness and the relative dimensional error.This fundamental investigation helps to explain the reasons for the major defects in down-facing surfaces of parts produced with Ti-6AL-4 V material, namely the dross formation and attempts to improve the predictability of quality within the region. Further to the establishment of the quadratic equations, a discussion is conducted on the thermomechanical processes involved in the mechanism of dross formation and explanations are given on the reasons behind the observed physical phenomena. The trend of the propagation of (Root Mean Square) RMS Surface roughness (Sq) and the relative dimensional error with respect to the Volumetric Energy Density (VED) is discussed in detail. The respective quadratic equations are then tested by a second round of validation prints, and the results confirm the feasibility of the developed quadratic models to accurately predict process outcomes especially when operating near the suggested optimal printing zones. The high roughness of low VED printing is attributed to the formation of ‘inverse mushroom’ structures, and the low roughness of high VED surface is attributed to the formation of large flat regions formed as adjacent meltpools that can fuse together at various locations

Cultural studies on Ustilaginoidea virens, the incitant of false smut of rice (Oryza sativa)

A study was carried out to find out the favourable culture media for mass multiplication and the effect of carbon sources and duration on chlamydospore germination of Ustilaginoidea virens (Cook.) Tak. Different synthetic and semi synthetic solid, liquid media, substrate media were evaluated for mass multiplication of U. virens. Potato sucrose broth was the best medium for fast mycelia growth (104.80 mg) and sporulation (6.78 × 105 spores/ml), potato dextrose broth also favored mycelial growth, whereas corn meal dextrose broth was not suitable. Out of four solid media tested, maximum colony diameter (68.74 mm) and sporulation (6.86 × 105 spores/ml) was produced by potato sucrose agar followed by potato dextrose agar. Maximum sporulation was produced on substrate media based on barley seeds (5.54 × 105 spores/ml) followed by rice seeds (3.72 × 105 spores/ml) whereas rice husk based media produced minimum sporulation. Higher concentration of sucrose and dextrose at 2 per cent supported maximum germination of spores of U. virens and sucrose was found superior in inducing germination than dextrose. The results of this study help to understand the physiological and biochemical requirements for the growth and development of the pathogen, which could serve as an input in disease management to minimize the effect of false smut disease on rice

Adipose tissue in breast cancer : not an idle bystander but an active participant in breast cancer progression

Background: Adipose tissue is a dynamic organ that secretes a plethora of molecules called adipokines. In breast cancer we find a unique situation were genetically changed cells (the cancer cells) are in close contact with adipocytes. Moreover, obesity is a known negative prognostic marker for postmenopausal breast cancer patients. We hypothesize that adipocyte-derived factors influence breast cancer progression. Materials and methods: Adipose tissue was collected from breast cancer patients undergoing a mastectomy. After macroscopic removal of blood vessels and connective tissue, the adipose tissue was carefully cut into 2-3mm3 pieces and were incubated in specific adipose-tissue culture medium. After 24h, the medium was collected and the quality was checked by determining the concentration of total proteins, leptin, adiponectin, TNFalpha and triglycerides. This conditioned medium of adipose tissue (CM AT) was used for in vitro experimentation with MCF-7 breast cancer cells. Results: Effect of AT on morphology and aggregation: when MCF-7 cells are grown in a culture flask, they tend to form round compact islands. Under influence of CM AT, the islands form sharp edges, the cells in an island can be counted individually and they show scattering. Importantly, despite the major changes in cellular morphology, CM AT removal rescued the compact island formation of MCF-7 cells. In the slow aggregation assay, cells treated with CM AT (and a subtherapeutic concentration of a neutralizing E-cadherin antibody) lost the ability to form compact aggregates. Furthermore, MCF-7 spheroids placed inside adipose tissue showed massive reorganization into an irregularly shaped mass. Effect of AT on proliferation: starting from an equal number of cells and counting them every 2 days, it became clear that MCF-7 cells with CM AT had a higher rate of proliferation than MCF-7 cells in control medium. This stimulation of proliferation was confirmed by cell cycle analysis which revealed a doubling of cells in the G2/M phase, and western blot which showed an upregulation of cyclin A and cyclin E, both positive regulators of the cell cycle. Effect of AT on invasion: a 24h collagen type I invasion assay revealed invasive characteristics of MCF-7 cells treated with CM AT while MCF-7 cells in control conditions are round and non-invasive. In contrast, a transwell collagen test over 14 days was not able to show MCF-7 cells invading the collagen gel under influence of CM AT. However, the growth pattern of MCF-7 cells on the collagen gel was clearly disorganised when compared with the control situation. Conclusion: These findings suggest that adipose tissue-derived factors exert a dramatic selective force on patterning, invasion and growth of MCF-7 breast cancer cells. Unraveling the mechanism behind these observations may provide vital information regarding the link between obesity and poor prognosis in postmenopausal breast cancer

Increased IL-10-producing regulatory T cells are characteristic of severe cases of COVID-19.

OBJECTIVES: The pandemic spread of the coronavirus SARS-CoV-2 is due, in part, to the immunological properties of the host-virus interaction. The clinical presentation varies from individual to individual, with asymptomatic carriers, mild-to-moderate-presenting patients and severely affected patients. Variation in immune response to SARS-CoV-2 may underlie this clinical variation. METHODS: Using a high-dimensional systems immunology platform, we have analysed the peripheral blood compartment of 6 healthy individuals, 23 mild-to-moderate and 20 severe COVID-19 patients. RESULTS: We identify distinct immunological signatures in the peripheral blood of the mild-to-moderate and severe COVID-19 patients, including T-cell lymphopenia, more consistent with peripheral hypo- than hyper-immune activation. Unique to the severe COVID-19 cases was a large increase in the proportion of IL-10-secreting regulatory T cells, a lineage known to possess anti-inflammatory properties in the lung. CONCLUSION: As IL-10-secreting regulatory T cells are known to possess anti-inflammatory properties in the lung, their proportional increase could contribute to a more severe COVID-19 phenotype. We openly provide annotated data (https://flowrepository.org/experiments/2713) with clinical correlates as a systems immunology resource for the COVID-19 research community

Genome-wide association mapping for identification of sheath blight resistance loci from wild rice Oryza rufipogon

Sheath blight (ShB) caused by Rhizoctonia solani is one of the serious constraints that hamper global rice production. It causes severe yield loss of up to 69% under favorable environmental conditions. The application of chemical fungicides remains the primary approach for the management of this disease. But, overuse of chemical fungicides causes potential health and environmental risk. The use of host plant resistance is a very effective, economic, and sustainable strategy to control sheath blight disease in rice. In this report, we have evaluated 405 accessions of Oryza rufipogon for four ShB-related traits i.e. lesion height (LH), plant height (PH), relative lesion length (RLH), and disease score (DS) during the years 2015, 2016, and 2017. A total of 44,109 high-quality SNP markers on 301 accessions were employed to identify significant marker-trait associations using a genome-wide association study (GWAS). The GWAS analysis revealed a total of 22 significant SNPs associated with the ShB-related traits distributed on all the rice chromosomes except 10 and 12. Among them, eleven were associated with RLH, seven with PH, and one each with LH and DS. The SNPs on chromosomes 3 and 9 were associated with multiple traits. Furthermore, seven ShB resistance loci were also found to be co-localized with previously reported ShB resistance genes/QTLs. These findings provide valuable information to identify key SNPs associated with ShB resistance. Significantly associated SNPs could be used for introgression of ShB resistance traits into rice cultivars using marker-assisted selection

Post-stroke inhibition of induced NADPH oxidase type 4 prevents oxidative stress and neurodegeneration

Ischemic stroke is the second leading cause of death worldwide. Only one moderately effective therapy exists, albeit with contraindications that exclude 90% of the patients. This medical need contrasts with a high failure rate of more than 1,000 pre-clinical drug candidates for stroke therapies. Thus, there is a need for translatable mechanisms of neuroprotection and more rigid thresholds of relevance in pre-clinical stroke models. One such candidate mechanism is oxidative stress. However, antioxidant approaches have failed in clinical trials, and the significant sources of oxidative stress in stroke are unknown. We here identify NADPH oxidase type 4 (NOX4) as a major source of oxidative stress and an effective therapeutic target in acute stroke. Upon ischemia, NOX4 was induced in human and mouse brain. Mice deficient in NOX4 (Nox4(-/-)) of either sex, but not those deficient for NOX1 or NOX2, were largely protected from oxidative stress, blood-brain-barrier leakage, and neuronal apoptosis, after both transient and permanent cerebral ischemia. This effect was independent of age, as elderly mice were equally protected. Restoration of oxidative stress reversed the stroke-protective phenotype in Nox4(-/-) mice. Application of the only validated low-molecular-weight pharmacological NADPH oxidase inhibitor, VAS2870, several hours after ischemia was as protective as deleting NOX4. The extent of neuroprotection was exceptional, resulting in significantly improved long-term neurological functions and reduced mortality. NOX4 therefore represents a major source of oxidative stress and novel class of drug target for stroke therapy