1,664 research outputs found
Utilización de derivados de quinazolinas para enfermedades neurodegenerativas
Peer reviewedConsejo Superior de Investigaciones CientíficasT3 Traducción de patente europe
El género Dryopteris Adanson (Dryopteridaceae) en el noroeste de la Península Ibérica
Se ha estudiado el nº de cromosomas, la cantidad de DNA mediante citometría de flujo, los caracteres esporales
a microscopía óptica y de barrido, el indusio, así como la corología de cada uno de los 10 taxones que
viven en el territorio
Temporal headache and jaw claudication may be the key for the diagnosis of giant cell arteritis
Temporal artery biopsy (TAB) is a surgical procedure with a low positive yield. The purpose of this study is to determine which variables are the most important in the giant cell arteritis (GCA) diagnosis. The objective of this evaluation is to improve the percentage of positive temporal artery biopsy and if possible, avoid the biopsy in some cases. A retrospective clinical study consisted of 90 patients who had undergone TAB at the Río Hortega Hospital (Spain) from January 2009 to December 2016. Clinical findings, erythrocyte sedimentation rates (ESR) and other laboratory parameters, American College of Rheumatology (ACR) criteria for GCA score and biopsy results were recorded. Nineteen (21.1%) biopsies were positive for GCA. The mean age in positive TAB was 78.6 years old (SD 7.93), and 73.7% were female. Presence of temporal headache (p = 0.003), jaw claudication (p = 0.001), abnormal artery exploration (p = 0.023), elevated erythrocyte sedimentation rate (p = 0.035), CRP (p = 0.018) and platelets (p = 0.042), were significantly associated with GCA. Multivariate logistic regression revealed that the best predictors for the diagnosis of GCA are headache and jaw claudication, adjusted by sex, age, and temporal exploration. TAB has benefit only for patients who score a 2 or 3 on the ACR criteria for GCA without biopsy. These findings highlight the need for a better diagnostic strategy for patients with suspected temporal arteritis
Astrobiological field campaign to a volcanosedimentary mars analogue methane producing subsurface protected ecosystem: Imuruk Lake (Alaska)
Viking missions reported adverse conditions for life in Mars surface. High hydrogen signal obtained by Mars orbiters has increased the interest in subsurface prospection as putative protected Mars environment with life potential. Permafrost has attracted considerable interest from an astrobiological point of view due to the recently reported results from the Mars exploration rovers. Considerable studies have been developed on extreme ecosystems and permafrost in particular, to evaluate the possibility of life on Mars and to test specific automated life detection instruments for space missions. The biodiversity of permafrost located on the Bering Land Bridge National Preserve has been studied as an example of subsurface protected niche of astrobiological interest. Different conventional (enrichment and isolation) and molecular ecology techniques (cloning, fluorescence "in situ" probe hybridization, FISH) have been used for isolation and bacterial identificationThe expedition to Imuruk Lake was supported by Centro de Astrobiología-INTA (Spain). The laboratory experimental procedures were supported by Grant AYA 2010–20213 “Desarrollo de Tecnología para la identificación de vida de forma automática” from the Spanish Governmen
CryoEM structures of the SARS-CoV-2 spike bound to antivirals
(Póster 63)
Background: Single-particle cryoelectron microscopy (cryoEM) has played a key role in the fight against COVID-19. The
molecular mechanisms for the action of some of the currently approved drugs targeting the SARS-CoV-2 RNA-dependent
RNA polymerase, the fast developments of the current available vaccines and antibody therapies are examples of the
impact of the knowledge gained from the cryoEM structures of SARS-CoV-2 proteins in complex with proteins (ACE2 or
antibodies/nanobodies) or small compounds. Our aim is to use this technology to understand structurally how certain
antiviral compounds and proteins targeting the spike may inhibit viral entry.
Methods: 1) Production of wild-type and mutated spike and ACE2 proteins using baculovirus/insect cells. 2) Spike
binding kinetics: protein-protein and protein-small compound interactions measured by BLI Biolayer interferometry
(BLI) and/or microscale Thermophoresis (MST). 3) Buffer optimization for cryoEM grid preparation of spike variants by
thermal shift assays and negative-staining electron microscopy (NSEM). These techniques are also used to adjust the
molar ratio of spike:ACE2 and spike:small-compound complexes. 4) Structural characterization by cryoEM.
Results: At IBV-CSIC we have created a pipeline for the production and characterization of several spike variants and
ACE2 decoys. While this pipeline is described in detail in other oral/poster communications, this communication is
centered around one of the pillars within this pipeline; the structural characterization of possible drug candidates
bound to the SARS-CoV-2 spike by cryoEM. In this way, we have successfully solved structures of the spike bound to:
A) protein inhibitors as ACE2 decoys; B) a small inhibitory compound; C) mixtures of proteins and small-compound
(nanobody-heparan derivative) working cooperatively as inhibitors. These protein/drug candidates were previously
selected based on the results obtained in our interactomics platform, whereas their concentration and the buffer
conditions for cryoEM grids preparation were established based on thermal shift assays and NSEM.
Conclusion: CryoEM is a powerful tool to directly visualize the effect caused by a potential drug on a protein target. In
a short period of time we have developed this technique in our institute to be applied to the SARS-CoV-2 spike protein,
not only to obtain high-resolution structures of SARS- CoV-2 spike variants of concern (see WP4) but also to obtain the
structures of complexes of the spike with various inhibitory compounds of very different nature
Lung transplantation from uncontrolled and controlled donation after circulatory death: similar outcomes to brain death donors
Controlled donation after circulatory death donors (cDCD) are becoming a frequent source of lungs grafts worldwide. Conversely, lung transplantations (LTx) from uncontrolled donors (uDCD) are sporadically reported. We aimed to review our institutional experience using both uDCD and cDCD and compare to LTx from brain death donors (DBD). This is a retrospective analysis of all LTx performed between January 2013 and December 2019 in our institution. Donor and recipient characteristics were collected and univariate, multivariate and survival analyses were carried out comparing the three cohorts of donors. A total of 239 (84.7%) LTx were performed from DBD, 29 (10.3%) from cDCD and 14 (5%) from uDCD. There were no statistically significant differences in primary graft dysfunction grade 3 at 72 h, 30- and 90-day mortality, need for extracorporeal membrane oxygenation after procedure, ICU and hospital length of stay, airway complications, CLAD incidence or survival at 1 and 3 years after transplant (DBD: 87.1% and 78.1%; cDCD: 89.7% and 89.7%; uDCD: 85.7% and 85.7% respectively; P = 0.42). Short- and mid-term outcomes are comparable between the three types of donors. These findings may encourage and reinforce all types of donation after circulatory death programmes as a valid and growing source of suitable organs for transplantatio
Mitochondrial bioenergetics boost macrophage activation, promoting liver regeneration in metabolically compromised animals
Background and aims: Hepatic ischemia-reperfusion injury (IRI) is the leading cause of early posttransplantation organ failure as mitochondrial respiration and ATP production are affected. A shortage of donors has extended liver donor criteria, including aged or steatotic livers, which are more susceptible to IRI. Given the lack of an effective treatment and the extensive transplantation waitlist, we aimed at characterizing the effects of an accelerated mitochondrial activity by silencing methylation-controlled J protein (MCJ) in three preclinical models of IRI and liver regeneration, focusing on metabolically compromised animal models.
Approach and results: Wild-type (WT), MCJ knockout (KO), and Mcj silenced WT mice were subjected to 70% partial hepatectomy (Phx), prolonged IRI, and 70% Phx with IRI. Old and young mice with metabolic syndrome were also subjected to these procedures. Expression of MCJ, an endogenous negative regulator of mitochondrial respiration, increases in preclinical models of Phx with or without vascular occlusion and in donor livers. Mice lacking MCJ initiate liver regeneration 12 h faster than WT and show reduced ischemic injury and increased survival. MCJ knockdown enables a mitochondrial adaptation that restores the bioenergetic supply for enhanced regeneration and prevents cell death after IRI. Mechanistically, increased ATP secretion facilitates the early activation of Kupffer cells and production of TNF, IL-6, and heparin-binding EGF, accelerating the priming phase and the progression through G1 /S transition during liver regeneration. Therapeutic silencing of MCJ in 15-month-old mice and in mice fed a high-fat/high-fructose diet for 12 weeks improves mitochondrial respiration, reduces steatosis, and overcomes regenerative limitations.
Conclusions: Boosting mitochondrial activity by silencing MCJ could pave the way for a protective approach after major liver resection or IRI, especially in metabolically compromised, IRI-susceptible organs.Funding information: Supported by grants from Ministerio de Ciencia, Innovación y Universidades
MICINN (PID2020-117116RB-100, RTI2018-096759-A-100, RTI2018-095114-B-I00, PID2019-108977RB-100 and RTI2018-095700-B100, integrado en el Plan Estatal de Investigación Científica y Técnica y Innovación, cofinanciado con
Fondos FEDER, to M.L.M.-C., T.C.D., C.P., P.M.-S., and N.G.A.A., respectively), Subprograma Retos Colaboración RTC2019-007125-1; Fundación Científica de la Asociación Española Contra el
Cáncer (AECC Scientific Foundation) Rare Tumor Calls 2017 (to M.L.M.-C.); Asociación Española contra el Cáncer (to T.C.D. and M.S.-M); La Caixa
Foundation Program (HR17-00601, to M.L.M.-C.), Proyectos Investigación en Salud DTS20/00138 (to M.L.M.-C.); Departamento de Industria del Gobierno Vasco (to M.L.M.-C.); Departamento de
Educación del Gobierno Vasco (to N.G.-U. and J.S.); Acción Estratégica Ciber Emergentes 2018 (Ciberehd-ISCIII) and Gilead Sciences International Research Scholars Program in Liver Disease (to
M.V.-R.); Ciberehd_ISCIII_MINECO is funded by the Instituto de Salud Carlos IIIAcknowledgments: We thank MINECO for the Severo Ochoa Excellence Accreditation to CIC bioGUNE (SEV-2016-0644). We acknowledge Begoña Rodríguez Iruretagoyena for the technical support provided
Use of an interactomics pipeline to assess the potential of new antivirals against SARS-CoV-2
(Póster 80)
Background: In late 2019 SARS-CoV-2 infection appeared in China, becoming a pandemic in 2020. The scientific
community reacted rapidly, characterizing the viral genome and its encoded proteins, aiming at interfering with viral
spreading with vaccines and antivirals. The receptor binding domain (RBD) of the viral spike (S) protein plays a key role
in cell entry of the virus. It interacts with the cellular receptor for SARS-CoV-2, the membrane-bound human Angiotensin
Converting Ectoenzyme 2 (ACE2). With the goal of monitoring interference with this interaction by potential antiviral
drugs, we have set up at the Institute for Biomedicine of Valencia (IBV-CSIC) an interactomics pipeline targeting the
initial step of viral entry.
Methods: For the production part of the pipeline (pure RBD/Spike variants and soluble ACE2), see parallel poster. These
proteins allowed monitoring of the RBD/Spike-ACE2 interaction in presence or absence of potential inhibitors. Thermal
shift assays (thermofluor) were used for initial detection of compound binding at different ligand/protein ratios
and media conditions (pH, buffers, chaotropic agents). Next, binding affinity and on/off kinetics were characterized
using Biolayer interferometry (BLI), Surface plasmon resonance (SPR), Microscale Thermophoresis (MST) and/or
Isothermal titration calorimetry (ITC). For protein-protein interactions, we mostly used BLI or SPR, whereas for proteinsmall
compound analysis MST was generally best. Protein aggregation-dissociation was monitored by size exclusion
chromatography with multiangle light scattering (SEC-MALS).
Results: Candidates proven by thermal shift assays to bind to RBD/spike protein without affecting the integrity of
these proteins were subjected to quantitative affinity measurements. We successfully demonstrated that BLI, SPR and
MST can be used to follow the interactions between SARS-CoV- 2 proteins and the putative drug candidates, as well
as to monitor the interference with Spike-Ace2 binding of potential drug candidates. While BLI and SPR displayed
reproducible results in the measurement of protein-protein interaction (applied to soluble ACE2 used as a decoy),
they were less suitable for measuring the binding of small molecules. The fact that most small compounds were only
soluble in organic solvents made difficult to obtain a low signal/noise while using BLI, necessary for the assessment
of the binding. We overcame that problem by using MST. After dilution of the compounds to the final experimental
concentrations, the technique could detect a significant binding signal enough to calculate binding parameters. MST
also allowed to measure the degree of interference that each compound was having on RBD/Spike-ACE2 interaction.
The pipeline has been customized and validated with compounds of very different nature provided by different groups
belonging to the PTI and other external laboratories, as well as with different Ace2 decoys designed at the IBV.
Conclusions: The interactomics platform at the IBV has been used to successfully develop two different antiviral
approaches in order to fight COVID-19. It has allowed technical specialization of the staff as well as the development,
in a very short period of time, of two ambitious projects. We have demonstrated that we can perform interactomic
characterization for challenging projects as well as provide information about binding of antivirals to potential new
SARS-CoV-2 variants of concern
C-2 Thiophenyl Tryptophan Trimers Inhibit Cellular Entry of SARS-CoV-2 through Interaction with the Viral Spike (S) Protein
26 páginas, 6 figuras, 2 tablas.Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) causes COVID-19, by infecting cells via the interaction of its spike protein (S) with the primary cell receptor angiotensin-converting enzyme (ACE2). To search for inhibitors of this key step in viral infection, we screened an in-house library of multivalent tryptophan derivatives. Using VSV-S pseudoparticles, we identified compound 2 as a potent entry inhibitor lacking cellular toxicity. Chemical optimization of 2 rendered compounds 63 and 65, which also potently inhibited genuine SARS-CoV-2 cell entry. Thermofluor and microscale thermophoresis studies revealed their binding to S and to its isolated receptor binding domain (RBD), interfering with the interaction with ACE2. High-resolution cryoelectron microscopy structure of S, free or bound to 2, shed light on cell entry inhibition mechanisms by these compounds. Overall, this work identifies and characterizes a new class of SARS-CoV-2 entry inhibitors with clear potential for preventing and/or fighting COVID-19.Funding for this project was provided by grants from the European Commission NextGenerationEU fund (EU 2020/2094), through CSIC’s Global Health Platform (PTI Salud Global), Crue-CSIC-Santander Fondo Supera Covid-19, and CSIC grant (CSIC-COV19-082) to R.G., M.-J-P.-P., V.R., J.B., A.M., and J.-L.L. and CIBERER, Instituto de Salud Carlos III (COV20/00437) to V.R., J.B., A.M., and J.-L.L. In addition, this work was funded by grant (Covid_19-SCI) from the Generalitat Valenciana y Conselleria de Innovación, Universidades, Ciencia
y Sociedad digital to R.G., and by grants PID2020-120322RB-C21 and PID2020-116880GB-I00 from the Agencia Estatal de Investigación of the Spanish Government to V.R. and J.-L.L., respectively.Peer reviewe
The Mars Environmental Dynamics Analyzer, MEDA. A Suite of Environmental Sensors for the Mars 2020 Mission
86 pags., 49 figs., 24 tabs.NASA’s Mars 2020 (M2020) rover mission includes a suite of sensors to monitor current environmental conditions near the surface of Mars and to constrain bulk aerosol properties from changes in atmospheric radiation at the surface. The Mars Environmental Dynamics Analyzer (MEDA) consists of a set of meteorological sensors including wind sensor, a barometer, a relative humidity sensor, a set of 5 thermocouples to measure atmospheric temperature at ∼1.5 m and ∼0.5 m above the surface, a set of thermopiles to characterize the thermal IR brightness temperatures of the surface and the lower atmosphere. MEDA adds a radiation and dust sensor to monitor the optical atmospheric properties that can be used to infer bulk aerosol physical properties such as particle size distribution, non-sphericity, and concentration. The MEDA package and its scientific purpose are described in this document as well as how it responded to the calibration tests and how it helps prepare for the human exploration of Mars. A comparison is also presented to previous environmental monitoring payloads landed on Mars on the Viking, Pathfinder, Phoenix, MSL, and InSight spacecraft.This work has been funded by the Spanish Ministry of Economy and Competitiveness, through the projects No. ESP2014-54256-C4-1-R (also -2-R, -3-R and -4-R) and AYA2015-65041-P; Ministry of Science, Innovation and Universities, projects No. ESP2016-79612-C3-1-R (also -2-R and -3-R),
ESP2016-80320-C2-1-R, RTI2018-098728-B-C31 (also -C32 and -C33) and RTI2018-099825-B-C31; Instituto Nacional de Técnica Aeroespacial; Ministry of Science and Innovation’s Centre for the Development of Industrial Technology; Grupos Gobierno Vasco IT1366-19; and European Research Council Consolidator Grant no 818602. The US co-authors performed their work under sponsorship from NASA’s Mars 2020 project, from the
Game Changing Development program within the Space Technology Mission Directorate and from the Human Exploration and Operations Directorate
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