602 research outputs found

    The role of landscape history in determining allelic richness of European ground squirrels (Spermophilus citellus) in Central Europe

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    Genetic diversity is of paramount importance for individual fitness and evolutionary potential of populations. For conservation planning it is crucial to know how genetically diverse a species is and what factors may explain variation of genetic diversity among populations. Our aim was to evaluate the effects of landscape history, ecological isolation, and local population size on allelic richness of local populations in European ground squirrels (Spermophiluscitellus). We genotyped 144 individuals from nine local populations collected in two neighbouring regions with decades of different landscape history. We assessed allelic richness, ecological isolation and local population size by eleven polymorphic microsatellites, the isolation index of Rodríguez and Delibes,and standardised counts of burrows openings, respectively. Statistical models indicated a strong effect of landscape history on allelic richness of local populations. Ecological isolation of local populations apparently played only a marginal role, and local population size was an unimportant factor. Our modelling results highlight the dominant role of landscape history for the genetic diversity of S. citellus. The strong landscape history effect encountered presently includes a different region-specific socio-economic development due to distinct agricultural systems in the two regions, especially after World War II. Levels of ecological isolation of local populations have diverged in an extent too small to explain variation of local allelic richness. The lack of significant effect of local population size suggests that census sizes of the populations studied are all not critically low. Moreover,census and estimated effective population sizes were not closely related. Establishing corridors or translocating S. citellus in the species’ historical range should be encouraged to promote gene flow between local populations and counteract the loss of genetic diversity by drift, provided that no conflicting factors (ecological, epidemiological, etc.) exist

    Hyperbolic odorant mixtures as a basis for more efficient signaling between flowering plants and bees

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    Animals use odors in many natural contexts, for example, for finding mates or food, or signaling danger. Most analyses of natural odors search for either the most meaningful components of a natural odor mixture, or they use linear metrics to analyze the mixture compositions. However, we have recently shown that the physical space for complex mixtures is ‘hyperbolic’, meaning that there are certain combinations of variables that have a disproportionately large impact on perception and that these variables have specific interpretations in terms of metabolic processes taking place inside the flower and fruit that produce the odors. Here we show that the statistics of odorants and odorant mixtures produced by inflorescences (Brassica rapa) are also better described with a hyperbolic rather than a linear metric, and that combinations of odorants in the hyperbolic space are better predictors of the nectar and pollen resources sought by bee pollinators than the standard Euclidian combinations. We also show that honey bee and bumble bee antennae can detect most components of the B. rapa odor space that we tested, and the strength of responses correlates with positions of odorants in the hyperbolic space. In sum, a hyperbolic representation can be used to guide investigation of how information is represented at different levels of processing in the CNS

    How nitrogen and phosphorus availability change water use efficiency in a Mediterranean savanna ecosystem

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    Nutrient availability, especially of nitrogen (N) and phosphorus (P), is of major importance for every organism and at a larger scale for ecosystem functioning and productivity. Changes in nutrient availability and potential stoichiometric imbalance due to anthropogenic nitrogen deposition might lead to nutrient deficiency or alter ecosystem functioning in various ways. In this study, we present 6 years (2014–2020) of flux-, plant-, and remote sensing data from a large-scale nutrient manipulation experiment conducted in a Mediterranean savanna-type ecosystem with an emphasis on the effects of N and P treatments on ecosystem-scale water-use efficiency (WUE) and related mechanisms. Two plots were fertilized with N (NT, 16.9 Ha) and N + P (NPT, 21.5 Ha), and a third unfertilized plot served as a control (CT). Fertilization had a strong impact on leaf nutrient stoichiometry only within the herbaceous layer with increased leaf N in both fertilized treatments and increased leaf P in NPT. Following fertilization, WUE in NT and NPT increased during the peak of growing season. While gross primary productivity similarly increased in NT and NPT, transpiration and surface conductance increased more in NT than in NPT. The results show that the NPT plot with higher nutrient availability, but more balanced N:P leaf stoichiometry had the highest WUE. On average, higher N availability resulted in a 40% increased leaf area index (LAI) in both fertilized treatments in the spring. Increased LAI reduced aerodynamic conductance and thus evaporation at both fertilized plots in the spring. Despite reduced evaporation, annual evapotranspiration increased by 10% (48.6 ± 28.3 kg H2O m−2), in the NT plot, while NPT remained similar to CT (−1%, −6.7 ± 12.2 kgH2O m−2). Potential causes for increased transpiration at NT could be increased root biomass and thus higher water uptake or rhizosphere priming to increase P-mobilization through microbes. The annual net ecosystem exchange shifted from a carbon source in CT (75.0 ± 20.6 gC m−2) to carbon-neutral in both fertilized treatments [−7.0 ± 18.5 gC m−2 (NT) 0.4 ± 22.6 gC m−2 (NPT)]. Our results show, that the N:P stoichiometric imbalance, resulting from N addition (without P), increases the WUE less than the addition of N + P, due to the strong increase in transpiration at NT, which indicates the importance of a balanced N and P content for WUE

    Bioassays to Monitor Taspase1 Function for the Identification of Pharmacogenetic Inhibitors

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    Background: Threonine Aspartase 1 (Taspase1) mediates cleavage of the mixed lineage leukemia (MLL) protein and leukemia provoking MLL-fusions. In contrast to other proteases, the understanding of Taspase1's (patho)biological relevance and function is limited, since neither small molecule inhibitors nor cell based functional assays for Taspase1 are currently available. Methodology/Findings: Efficient cell-based assays to probe Taspase1 function in vivo are presented here. These are composed of glutathione S-transferase, autofluorescent protein variants, Taspase1 cleavage sites and rational combinations of nuclear import and export signals. The biosensors localize predominantly to the cytoplasm, whereas expression of biologically active Taspase1 but not of inactive Taspase1 mutants or of the protease Caspase3 triggers their proteolytic cleavage and nuclear accumulation. Compared to in vitro assays using recombinant components the in vivo assay was highly efficient. Employing an optimized nuclear translocation algorithm, the triple-color assay could be adapted to a high-throughput microscopy platform (Z'factor = 0.63). Automated high-content data analysis was used to screen a focused compound library, selected by an in silico pharmacophor screening approach, as well as a collection of fungal extracts. Screening identified two compounds, N-[2-[(4-amino-6-oxo-3H-pyrimidin-2-yl)sulfanyl]ethyl]benzenesulfonamideand 2-benzyltriazole-4,5-dicarboxylic acid, which partially inhibited Taspase1 cleavage in living cells. Additionally, the assay was exploited to probe endogenous Taspase1 in solid tumor cell models and to identify an improved consensus sequence for efficient Taspase1 cleavage. This allowed the in silico identification of novel putative Taspase1 targets. Those include the FERM Domain-Containing Protein 4B, the Tyrosine-Protein Phosphatase Zeta, and DNA Polymerase Zeta. Cleavage site recognition and proteolytic processing of these substrates were verified in the context of the biosensor. Conclusions: The assay not only allows to genetically probe Taspase1 structure function in vivo, but is also applicable for high-content screening to identify Taspase1 inhibitors. Such tools will provide novel insights into Taspase1's function and its potential therapeutic relevance

    Propagating spin-wave spectroscopy in nanometer-thick YIG films at millikelvin temperatures

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    Performing propagating spin-wave spectroscopy of thin films at millikelvin temperatures is the next step towards the realisation of large-scale integrated magnonic circuits for quantum applications. Here we demonstrate spin-wave propagation in a 100 nm100\,\mathrm{nm}-thick yttrium-iron-garnet film at the temperatures down to 45 mK45 \,\mathrm{mK}, using stripline nanoantennas deposited on YIG surface for the electrical excitation and detection. The clear transmission characteristics over the distance of 10 μm10\,\mu \mathrm{m} are measured and the subtracted spin-wave group velocity and the YIG saturation magnetisation agree well with the theoretical values. We show that the gadolinium-gallium-garnet substrate influences the spin-wave propagation characteristics only for the applied magnetic fields beyond 75 mT75\,\mathrm{mT}, originating from a GGG magnetisation up to 47 kA/m47 \,\mathrm{kA/m} at 45 mK45 \,\mathrm{mK}. Our results show that the developed fabrication and measurement methodologies enable the realisation of integrated magnonic quantum nanotechnologies at millikelvin temperatures.Comment: 6 pages, 5 figure
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