181 research outputs found

    Experimental and computational analyses reveal that environmental restrictions shape HIV-1 spread in 3D cultures

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    Here, using an integrative experimental and computational approach, Imle et al. show how cell motility and density affect HIV cell-associated transmission in a three-dimensional tissue-like culture system of CD4+ T cells and collagen, and how different collagen matrices restrict infection by cell-free virions

    Toward Evidence-Based Antiracist Policymaking: Problems and Proposals for Better Racial Data Collection and Reporting

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    The study of data concerning racial and ethnic inequities and disparities allows us to better understand experiences of racism, and to see more clearly how and where racism manifests. Studying the effects of racism, in turn, allows us to more easily identify racist policies, so that we can craft antiracist interventions. Existing race and ethnicity data collection efforts are riddled with gaps and errors, including missing and incomplete data, insufficiently disaggregated data, lack of meaningful longitudinal data, infrequently updated data, non-standardized methodologies, and other problems. These deficiencies significantly hinder evidence-based antiracist policymaking. This policy report examines the state of racial and ethnic demographic data collection and reporting in the U.S., and offers policy recommendations to improve such systems. In particular, this report demonstrates the need for a standardized and nation-wide system of racial data collection and reporting. This report is based on the experiences of two teams of researchers that collected racial and ethnic data between March 2020 and August 2021: The COVID Racial Data Tracker (CRDT) and the Racial Data Tracker (RDT). The CRDT, a collaboration between The Atlantic’s COVID Tracking Project and the BU Center for Antiracist Research (the Center), was the first public database containing racial demographic data about COVID-19 cases, hospitalizations, and deaths across the U.S. The RDT, a Center initiative, collects racial and ethnic data in several other policy areas, including houselessness, criminal arrests, and police violence. The CRDT and RDT teams’ experiences, described in this Report, demonstrate the current challenges of obtaining racial and ethnic data across different jurisdictions, levels of government, and policy areas, and offer critical insight as to how to reform racial and ethnic data collection and reporting practices in the U.S

    Genomic Legacy of the African Cheetah, Acinonyx jubatus

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    Background Patterns of genetic and genomic variance are informative in inferring population history for human, model species and endangered populations. Results Here the genome sequence of wild-born African cheetahs reveals extreme genomic depletion in SNV incidence, SNV density, SNVs of coding genes, MHC class I and II genes, and mitochondrial DNA SNVs. Cheetah genomes are on average 95 % homozygous compared to the genomes of the outbred domestic cat (24.08 % homozygous), Virunga Mountain Gorilla (78.12 %), inbred Abyssinian cat (62.63 %), Tasmanian devil, domestic dog and other mammalian species. Demographic estimators impute two ancestral population bottlenecks: one \u3e100,000 years ago coincident with cheetah migrations out of the Americas and into Eurasia and Africa, and a second 11,084–12,589 years ago in Africa coincident with late Pleistocene large mammal extinctions. MHC class I gene loss and dramatic reduction in functional diversity of MHC genes would explain why cheetahs ablate skin graft rejection among unrelated individuals. Significant excess of non-synonymous mutations in AKAP4 (p\u3c0.02), a gene mediating spermatozoon development, indicates cheetah fixation of five function-damaging amino acid variants distinct from AKAP4 homologues of other Felidae or mammals; AKAP4 dysfunction may cause the cheetah’s extremely high (\u3e80 %) pleiomorphic sperm. Conclusions The study provides an unprecedented genomic perspective for the rare cheetah, with potential relevance to the species’ natural history, physiological adaptations and unique reproductive disposition

    Homeostatic Regulation of Salmonella-Induced Mucosal Inflammation and Injury by IL-23

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    IL-12 and IL-23 regulate innate and adaptive immunity to microbial pathogens through influencing the expression of IFN-γ, IL-17, and IL-22. Herein we define the roles of IL-12 and IL-23 in regulating host resistance and intestinal inflammation during acute Salmonella infection. We find that IL-23 alone is dispensable for protection against systemic spread of bacteria, but synergizes with IL-12 for optimal protection. IL-12 promotes the production of IFN-γ by NK cells, which is required for resistance against Salmonella and also for induction of intestinal inflammation and epithelial injury. In contrast, IL-23 controls the severity of inflammation by inhibiting IL-12A expression, reducing IFN-γ and preventing excessive mucosal injury. Our studies demonstrate that IL-23 is a homeostatic regulator of IL-12-dependent, IFN-γ-mediated intestinal inflammation

    An electrochromic ionic liquid: design, characterisation and performance in a solid state platform

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    This work describes the synthesis and characteristics of a novel electrochromic ionic liquid (IL) based on a phosphonium core tethered to a viologen moiety. When integrated into a solid-state electrochromic platform, the viologen modified IL behaved as both the electrolyte and the electrochromic material. Platform fabrication was achieved through in situ photo-polymerisation and encapsulation of this novel IL within a hybrid sol-gel. Important parameters of the platform performance, including its coloration efficiency, switching kinetics and optical properties were characterised using UV/Vis spectroscopy and cyclic voltammetry in tandem. The electrochromic platform exhibits a coloration efficiency of 10.72 cm2C-1, and a varied optical output as a function of the incident current. Despite the rather viscous nature of the material, the platform exhibited approximately two orders of magnitude faster switching kinetics (221 seconds to reach 95 % absorbance) when compared to previously reported electrochromic ILs (18,000 seconds)

    Studies of η\eta and η\eta' production in pppp and ppPb collisions

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    The production of η\eta and η\eta' mesons is studied in proton-proton and proton-lead collisions collected with the LHCb detector. Proton-proton collisions are studied at center-of-mass energies of 5.025.02 and 13 TeV13~{\rm TeV}, and proton-lead collisions are studied at a center-of-mass energy per nucleon of 8.16 TeV8.16~{\rm TeV}. The studies are performed in center-of-mass rapidity regions 2.5<yc.m.<3.52.5<y_{\rm c.m.}<3.5 (forward rapidity) and 4.0<yc.m.<3.0-4.0<y_{\rm c.m.}<-3.0 (backward rapidity) defined relative to the proton beam direction. The η\eta and η\eta' production cross sections are measured differentially as a function of transverse momentum for 1.5<pT<10 GeV1.5<p_{\rm T}<10~{\rm GeV} and 3<pT<10 GeV3<p_{\rm T}<10~{\rm GeV}, respectively. The differential cross sections are used to calculate nuclear modification factors. The nuclear modification factors for η\eta and η\eta' mesons agree at both forward and backward rapidity, showing no significant evidence of mass dependence. The differential cross sections of η\eta mesons are also used to calculate η/π0\eta/\pi^0 cross section ratios, which show evidence of a deviation from the world average. These studies offer new constraints on mass-dependent nuclear effects in heavy-ion collisions, as well as η\eta and η\eta' meson fragmentation.Comment: All figures and tables, along with machine-readable versions and any supplementary material and additional information, are available at https://lhcbproject.web.cern.ch/Publications/p/LHCb-PAPER-2023-030.html (LHCb public pages

    Fraction of χc\chi_c decays in prompt J/ψJ/\psi production measured in pPb collisions at sNN=8.16\sqrt{s_{NN}}=8.16 TeV

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    The fraction of χc1\chi_{c1} and χc2\chi_{c2} decays in the prompt J/ψJ/\psi yield, Fχc=σχcJ/ψ/σJ/ψF_{\chi c}=\sigma_{\chi_c \to J/\psi}/\sigma_{J/\psi}, is measured by the LHCb detector in pPb collisions at sNN=8.16\sqrt{s_{NN}}=8.16 TeV. The study covers the forward (1.5<y<4.01.5<y^*<4.0) and backward (5.0<y<2.5-5.0<y^*<-2.5) rapidity regions, where yy^* is the J/ψJ/\psi rapidity in the nucleon-nucleon center-of-mass system. Forward and backward rapidity samples correspond to integrated luminosities of 13.6 ±\pm 0.3 nb1^{-1} and 20.8 ±\pm 0.5 nb1^{-1}, respectively. The result is presented as a function of the J/ψJ/\psi transverse momentum pT,J/ψp_{T,J/\psi} in the range 1<pT,J/ψ<20<p_{T, J/\psi}<20 GeV/cc. The FχcF_{\chi c} fraction at forward rapidity is compatible with the LHCb measurement performed in pppp collisions at s=7\sqrt{s}=7 TeV, whereas the result at backward rapidity is 2.4 σ\sigma larger than in the forward region for 1<pT,J/ψ<31<p_{T, J/\psi}<3 GeV/cc. The increase of FχcF_{\chi c} at low pT,J/ψp_{T, J/\psi} at backward rapidity is compatible with the suppression of the ψ\psi(2S) contribution to the prompt J/ψJ/\psi yield. The lack of in-medium dissociation of χc\chi_c states observed in this study sets an upper limit of 180 MeV on the free energy available in these pPb collisions to dissociate or inhibit charmonium state formation.Comment: All figures and tables, along with machine-readable versions and any supplementary material and additional information, are available at https://cern.ch/lhcbproject/Publications/p/LHCb-PAPER-2023-028.html (LHCb public pages

    A measurement of ΔΓs\Delta \Gamma_{s}

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    Using a dataset corresponding to 9 fb19~\mathrm{fb}^{-1} of integrated luminosity collected with the LHCb detector between 2011 and 2018 in proton-proton collisions, the decay-time distributions of the decay modes Bs0J/ψηB_s^0 \rightarrow J/\psi \eta' and Bs0J/ψπ+πB_s^0 \rightarrow J/\psi \pi^{+} \pi^{-} are studied. The decay-width difference between the light and heavy mass eigenstates of the Bs0B_s^0 meson is measured to be ΔΓs=0.087±0.012±0.009ps1\Delta \Gamma_s = 0.087 \pm 0.012 \pm 0.009 \, \mathrm{ps}^{-1}, where the first uncertainty is statistical and the second systematic.Comment: All figures and tables, along with machine-readable versions and any supplementary material and additional information, are available at https://cern.ch/lhcbproject/Publications/p/LHCb-PAPER-2023-025.htm
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