Ecohydrology in Mediterranean areas: a numerical model to describe growing seasons out of phase with precipitations

International audienceThe probabilistic description of soil moisture dynamics is a relatively new topic in hydrology. The most common ecohydrological models start from a stochastic differential equation describing the soil water balance, where the unknown quantity, the soil moisture, depends both on spaces and time. Most of the solutions existing in literature are obtained in a probabilistic framework and under steady-state condition; even if this last condition allows the analytical handling of the problem, it has considerably simplified the same problem by subtracting generalities from it. The steady-state hypothesis, appears perfectly applicable in arid and semiarid climatic areas like those of African's or middle American's savannas, but it seems to be no more valid in areas with Mediterranean climate, where, notoriously, the wet season foregoes the growing season, recharging water into the soil. This moisture stored at the beginning of the growing season (known as soil moisture initial condition) has a great importance, especially for deep-rooted vegetation, by enabling survival in absence of rainfalls during the growing season and, however, keeping the water stress low during the first period of the same season. The aim of this paper is to analyze the soil moisture dynamics using a simple non-steady numerical ecohydrological model. The numerical model here proposed is able to reproduce soil moisture probability density function, obtained analytically in previous studies for different climates and soils in steady-state conditions; consequently it can be used to compute both the soil moisture time-profile and the vegetation static water stress time-profile in non-steady conditions. Here the differences between the steady-analytical and the non-steady numerical probability density functions are analyzed, showing how the proposed numerical model is able to capture the effects of winter recharge on the soil moisture. The dynamic water stress is also numerically evaluated, implicitly taking into account the soil moisture condition at the beginning of the growing season. It is also shown the role of different annual climatic parameterizations on the soil moisture probability density function and on the vegetation water stress evaluation. The proposed model is applied to a case study characteristic of Mediterranean climate: the watershed of Eleuterio in Sicily (Italy)

Modelling the shrub encroachment in a grassland with a Cellular Automata Model

Abstract. Arid and semi-arid grasslands of southwestern North America have changed dramatically over the last 150 years as a result of shrub encroachment, i.e. the increase in density, cover and biomass of indigenous shrubby plants in grasslands. Numerous studies have documented the expansion of shrublands in the southwestern American grasslands; in particular shrub encroachment has occurred strongly in part of the northern Chihuahuan desert since 1860. This encroachment has been simulated using an ecohydrological Cellular Automata model, CATGraSS. It is a spatially distributed model driven by spatially explicit irradiance and runs on a fine-resolution gridded domain. Plant competition is modelled by keeping track of mortality and establishment of plants; both are calculated probabilistically based on soil moisture stress. For this study CATGraSS has been improved with a stochastic fire module and a grazing function. The model has been implemented in a small area in Sevilleta National Wildlife Refuge (SNWR), characterized by two vegetation types (grass savanna and creosote bush shrub), considering as encroachment causes the fire return period increase, the grazing increase, the seed dispersal caused by animals, the role of wind direction and plant type competition. The model is able to reproduce the encroachment that has occurred in SNWR, simulating an increase of the shrub from 2% in 1860 to the current shrub percentage, 42%, and highlighting among the most influential factors the reduced fire frequency and the increased grazing intensity

Quasi-Particle Spectra, Charge-Density-Wave, Superconductivity and Electron-Phonon Coupling in 2H-NbSe2

High-resolution photoemission has been used to study the electronic structure of the charge density wave (CDW) and superconducting (SC) dichalcogenide, 2H- NbSe2. From the extracted self-energies, important components of the quasiparticle (QP) interactions have been identified. In contrast to previously studied TaSe2, the CDW transition does not affect the electronic properties significantly. The electron-phonon coupling is identified as a dominant contribution to the QP self-energy and is shown to be very anisotropic (k-dependent) and much stronger than in TaSe2.Comment: 4 pages, 3 figures, minor changes, to appear in PR

Propargyl carbamate-functionalized Cu(II)-metal organic framework after reaction with chloroauric acid: An x-ray photoelectron spectroscopy data record

A copper-containing metal organic framework was prepared using the new organic linker 5-(2-{[(prop-2-yn-1-yloxy)carbonyl]-amino} ethoxy)isophthalic acid [1,3-H2YBDC (where Y = alkYne and BDC = Benzene DiCarboxylate)] and functionalized with gold particles by reaction with HAuCl4 under thermal treatment in methanol. The resulting system was investigated by complementary techniques to obtain information on its structure and morphology. In the present work, x-ray photoelectron spectroscopy (XPS) was employed to analyze the chemical composition of a representative specimen. Besides wide scan spectra, data obtained by the analysis of the C 1s, O 1s, N 1s, Cu 2p, and Au 4f signals are presented and critically discussed. The results highlight the reduction of Au(III) to mostly Au(I) species. Overall, the data presented herein may act as useful guidelines for the eventual tailoring of material properties and their possible implementation toward functional applications in heterogeneous catalysis

Functional and dysfunctional conformers of human neuroserpin Characterized by optical spectroscopies and molecular dynamics

Neuroserpin (NS) is a serine protease inhibitor (SERPIN) involved in different neurological pathologies, including the Familial Encephalopathy with Neuroserpin Inclusion Bodies (FENIB), related to the aberrant polymerization of NS mutants. Here we present an in vitro and in silico characterization of native neuroserpin and its dysfunctional conformation isoforms: the proteolytically cleaved conformer, the inactive latent conformer, and the polymeric species. Based on circular dichroism and fluorescence spectroscopy, we present an experimental validation of the latent model and highlight the main structural features of the different conformers. In particular, emission spectra of aromatic residues yield distinct conformational fingerprints, that provide a novel and simple spectroscopic tool for selecting serpin conformers in vitro. Based on the structural relationship between cleaved and latent serpins, we propose a structural model for latent NS, for which an experimental crystallographic structure is lacking. Molecular Dynamics simulations suggest that NS conformational stability and flexibility arise from a spatial distribution of intramolecular salt-bridges and hydrogen bonds

PCSK9-D374Y mediated LDL-R degradation can be functionally inhibited by EGF-A and truncated EGF-A peptides: An in vitro study

Background and aims: Proprotein convertase subtilisin/kexin type 9 (PCSK9) binds to low density lipoprotein receptor (LDLR) through the LDLR epidermal growth factor-like repeat A (EGF-A) domain and induces receptor internalization and degradation. PCSK9 has emerged as a novel therapeutic target for hypercholesterolemia. Clinical studies with PCSK9 inhibiting antibodies have demonstrated strong LDL-c lowering effects, but other therapeutic approaches using small molecule inhibitors for targeting PCSK9 functions may offer supplementary therapeutic options. The aim of our study was to evaluate the effect of synthetic EGF-A analogs on mutated (D374Y) PCSK9-D374Y mediated LDLR degradation in vitro. Methods: Huh7 human hepatoma cells were transiently transfected to overexpress the gain-of-function D374Y PCSK9 mutation, which has been associated with severe hypercholesterolemia in humans. Results: Transient transfection of cells with PCSK9-D374Y expression vector very effectively enhanced degradation of mature LDLR in Huh7. Treatment with both EGF-A and EGF-A truncated peptides inhibited this effect and showed increased LDLR protein in Huh7 cells transfected with PCSK9-D374Y in a clear concentration dependent manner. Huh7 transfected cells treated with increasing concentration of EGF-A analogs also showed an increase internalization of labeled Dil-LDL. Conclusions: The result of our study shows that EGF-A analogs are able to effectively hamper the enhanced degradation of LDLR in liver cells expressing PCSK9-D374Y

Growth of NiO thin films in the presence of water vapor: insights from experiments and theory

NiO-based thin films and nanomaterials are promising candidates for a variety of end-uses, encompassing photo- and electrocatalysts, solar cells, displays, and sensors. This widespread attention has strongly fueled the interest in the fabrication of tailored systems featuring modular chemico-physical properties as a function of the required application. In this study, a single-step chemical vapor deposition (CVD) route for the preparation of pure and fluorine-doped NiO films is presented. Growth experiments were performed under water vapor-containing oxygen atmospheres from a series of Ni(II) β-diketonate–diamine molecular precursors featuring a different fluorination degree of the ligand side chain. A comprehensive experimental and theoretical investigation yielded valuable insights into the growth mechanism, with particular regard to the dependence of the system electronic properties on fluorine doping and content, and to the role exerted by water vapor in the reaction atmosphere. In fact, the interactions of water with the diketonate ligands contribute to weaken Ni–O bonds, favoring precursor activation. The obtainment of F-doped NiO systems from fluorinated derivatives and the simplicity of our process make the adopted strategy a valuable tool to control the system characteristics for a variety of eventual functional applications

Urinary metabolomics (GC-MS) reveals that low and high birth weight infants share elevated inositol concentrations at birth

Objective: Metabolomics is a new ‘‘omics’’ platform aimed at high-throughput identification, quantification and characterization of small molecule metabolites. The metabolomics approach has been successfully applied to the classification different physiological states and identification of perturbed biochemical pathways. The purpose of the current investigation is the application of metabolomics to explore biological mechanisms which may lead to the onset of metabolic syndrome in adulthood. Methods: We evaluated differences in metabolites in the urine collected within 12 hours from 23 infants with IUGR (IntraUterine Growth Restriction), or LGA (Large for Gestational Age), compared to control infants (10 patients defined AGA: Appropriate for Gestational Age). Urinary metabolites were quantified by GC-MS and used to highlight similarities between the two metabolic diseases and identify metabolic markers for their predisposition. Quantified metabolites were analyzed using a multivariate statistics coupled with receiver operator characteristic curve (ROC) analysis of identified biomarkers. Results: Urinary myo-inositol was the most important discriminant between LGA + IUGR and control infants, and displayed an area under the ROC curve¼1. Conclusion: We postulate that the increase in plasma and consequently urinary inositol may constitute a marker of altered glucose metabolism during fetal development in both IUGR and LGA newborns

NUTRITION, MALNUTRITION AND DIETARY INTERVENTIONS IN INFLAMMATORY BOWEL DISEASE

Inflammatory Bowel Disease (IBD), which includes both Crohn's disease (CD) and Ulcerative Colitis (UC), is a chronic idiopathic inflammatory disorder affecting the gastrointestinal tract. Diet, as a source of luminal antigens, is thought to be an important factor in the pathogenesis of IBD. often the nutritional status of patients is significantly compromised, particularly in CD. several factors, including drug-nutrient interactions, disease location, symptoms, and dietary restriction can lead to protein energy malnutrition and specific nutritional deficiencies. solid evidence regarding the accountability of certain dietary components in the etiology of IBD are lacking. With regard to malnutrition, its consequence are growth failure, weight loss, bone disease, and/or micronutrient deficiencies, although micronutrient deficiency in IBD in most cases does not tend to have any evident clinical manifestation, except with regardo of iron, folic acid, and vitamin B. Nutritional supplemantation is essential for patients with evidence of malnutrition to increase calorie, and protein intake. Nutritional supplementation can also have efficacy in the induction and maintenance of remission in adults with CD, however it does not replace other treatments. Aim of this review is to discuss the role of nutrition and nutrients' deficiencies in the clinical setting of IBD, and to analyze efficacy and safety of the dietary interventions in patients with IBD