51 research outputs found
Bis[μ-4,4′,6,6′-tetrachloro-2,2′-(piperazine-1,4-diyldimethylene)diphenolato]dicopper(II)
In the centrosymmetric dinuclear CuII title complex, [Cu2(C18H16Cl4N2O2)2], the CuII atom adopts a square-pyramidal geometry with a tetradentate ligand in the basal plane. The apical site is occupied by a phenolate O atom from an adjacent ligand, forming a dimer. The molecular structure is stabilized by intramolecular C—H⋯O and C—H⋯Cl hydrogen bonds
Macro-Scale Population Patterns in the Kofun Period of the Japanese Archipelago: Quantitative Analysis of a Larger Sample of Three-Dimensional Data from Ancient Human Crania
The present study collected a larger set of three-dimensional data on human crania from the Kofun period (as well as from previous periods, i.e., the Jomon and Yayoi periods) in the Japanese archipelago (AD 250 to around 700) than previous studies. Three-dimensional geometric morphometrics were employed to investigate human migration patterns in finer-grained phases. These results are consistent with those of previous studies, although some new patterns were discovered. These patterns were interpreted in terms of demic diffusion, archaeological findings, and historical evidence. In particular, the present results suggest the presence of a gradual geological cline throughout the Kofun period, although the middle period did not display such a cline. This discrepancy might reflect social changes in the middle Kofun period, such as the construction of keyhole-shaped mounds in the peripheral regions. The present study implies that a broader investigation with a larger sample of human crania is essential to elucidating macro-level cultural evolutionary processes
Detection of significant antiviral drug effects on COVID-19 with reasonable sample sizes in randomized controlled trials : a modeling study
Background
Development of an effective antiviral drug for Coronavirus Disease 2019 (COVID-19) is a global health priority. Although several candidate drugs have been identified through in vitro and in vivo models, consistent and compelling evidence from clinical studies is limited. The lack of evidence from clinical trials may stem in part from the imperfect design of the trials. We investigated how clinical trials for antivirals need to be designed, especially focusing on the sample size in randomized controlled trials.
Methods and findings
A modeling study was conducted to help understand the reasons behind inconsistent clinical trial findings and to design better clinical trials. We first analyzed longitudinal viral load data for Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) without antiviral treatment by use of a within-host virus dynamics model. The fitted viral load was categorized into 3 different groups by a clustering approach. Comparison of the estimated parameters showed that the 3 distinct groups were characterized by different virus decay rates (p-value < 0.001). The mean decay rates were 1.17 d−1 (95% CI: 1.06 to 1.27 d−1), 0.777 d−1 (0.716 to 0.838 d−1), and 0.450 d−1 (0.378 to 0.522 d−1) for the 3 groups, respectively. Such heterogeneity in virus dynamics could be a confounding variable if it is associated with treatment allocation in compassionate use programs (i.e., observational studies).
Subsequently, we mimicked randomized controlled trials of antivirals by simulation. An antiviral effect causing a 95% to 99% reduction in viral replication was added to the model. To be realistic, we assumed that randomization and treatment are initiated with some time lag after symptom onset. Using the duration of virus shedding as an outcome, the sample size to detect a statistically significant mean difference between the treatment and placebo groups (1:1 allocation) was 13,603 and 11,670 (when the antiviral effect was 95% and 99%, respectively) per group if all patients are enrolled regardless of timing of randomization. The sample size was reduced to 584 and 458 (when the antiviral effect was 95% and 99%, respectively) if only patients who are treated within 1 day of symptom onset are enrolled. We confirmed the sample size was similarly reduced when using cumulative viral load in log scale as an outcome.
We used a conventional virus dynamics model, which may not fully reflect the detailed mechanisms of viral dynamics of SARS-CoV-2. The model needs to be calibrated in terms of both parameter settings and model structure, which would yield more reliable sample size calculation.
Conclusions
In this study, we found that estimated association in observational studies can be biased due to large heterogeneity in viral dynamics among infected individuals, and statistically significant effect in randomized controlled trials may be difficult to be detected due to small sample size. The sample size can be dramatically reduced by recruiting patients immediately after developing symptoms. We believe this is the first study investigated the study design of clinical trials for antiviral treatment using the viral dynamics model
What is cost-efficient phenotyping? Optimizing costs for different scenarios
Progress in remote sensing and robotic technologies decreases the hardware costs of phenotyping. Here, we first review cost-effective imaging devices and environmental sensors, and present a trade-off between investment and manpower costs. We then discuss the structure of costs in various real-world scenarios. Hand-held low-cost sensors are suitable for quick and infrequent plant diagnostic measurements. In experiments for genetic or agronomic analyses, (i) major costs arise from plant handling and manpower; (ii) the total costs per plant/microplot are similar in robotized platform or field experiments with drones, hand-held or robotized ground vehicles; (iii) the cost of vehicles carrying sensors represents only 5–26% of the total costs. These conclusions depend on the context, in particular for labor cost, the quantitative demand of phenotyping and the number of days available for phenotypic measurements due to climatic constraints. Data analysis represents 10–20% of total cost if pipelines have already been developed. A trade-off exists between the initial high cost of pipeline development and labor cost of manual operations. Overall, depending on the context and objsectives, “cost-effective” phenotyping may involve either low investment (“affordable phenotyping”), or initial high investments in sensors, vehicles and pipelines that result in higher quality and lower operational costs
Theoretical Morphological Models of Molluscan Shells
Schematic diagrams of theoretical morphological models of Molluscan shells.<br
mgdc0001-mvi-soybean-indv-1
<p>Multi-view image dataset of soybean individuals (Enrei, Zairai 51–2, Aoakimame, Saga zairai).</p><p>A manuscript related to this dataset is presently submitted/under peer review. Upon completing this process, the data will be publicly available to all.</p>
Untreated leaf image dataset
<p>A total of 479 leaves of five species (99 <em>Quercus acutissima</em>, 166 <em>Zelkova serrata</em>, 77 <em>Prunus × yedoensis</em>, 49 <em>Morella rubra</em>, and 88 <em>Ficus erecta</em>) were sampled at the Ito Campus of Kyushu University from August 2021 to November 2021.</p>
Scatter plots of nodes, edges, and leaf area.
The slope of each regression line was 2.37 for the untreated and 3.13 for the cleared leaves (number of nodes vs. number of edges); 362.2 for untreated and 2268.5 for cleared leaves (leaf area vs. the number of nodes); 806.3 for the untreated and 6950.1 for the cleared leaf (leaf area vs. the number of edges).</p
Cases of failed vein extraction from untreated leaves.
Cases of failed vein extraction from untreated leaves.</p
Segmented vein images and graph representation of leaves of the cleared leaf dataset along PC2.
Segmented vein images and graph representation of leaves of the cleared leaf dataset along PC2.</p
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