Complete Plastid Genome Sequences of Two Species of the Neotropical Genus Brunellia (Brunelliaceae)

Here we present the first two complete plastid genomes for Brunelliaceae, a Neotropical family with a single genus, Brunellia. We surveyed the entire plastid genome in order to find variable cpDNA regions for further phylogenetic analyses across the family. We sampled morphologically different species, B. antioquensis and B. trianae, and found that the plastid genomes are 157,685 and 157,775 bp in length and display the typical quadripartite structure found in angiosperms. Despite the clear morphological distinction between both species, the molecular data show a very low level of divergence. The amount of nucleotide substitutions per site is one of the lowest reported to date among published congeneric studies (π = 0.00025). The plastid genomes have gene order and content coincident with other COM (Celastrales, Oxalidales, Malpighiales) relatives. Phylogenetic analyses of selected superrosid representatives show high bootstrap support for the ((C,M)O) topology. The N-fixing clade appears as the sister group of the COM clade and Zygophyllales as the sister to the rest of the fabids group

Obituary: William Mark Whitten (1954−2019)

On April 11, 2019, Dr. William Mark Whitten, a prolific neotropical orchid biologist passed away unexpectedly. He leaves an extensive corpus of work focused on (but not limited to) orchid pollination and systematics, and over four thousand beautifully prepared herbarium specimens. Everyone that met Mark can agree that he was a wonderful human being, kind to everyone, incredibly knowledgeable and yet very humble. Always of a calm demeanor, great sense of humor, and willingness to help, Mark was an outstanding and relatable collaborator, and his publications (more than a hundred; see list below) are evidence of a productive and highly collaborative academic career.UCR::Vicerrectoría de Docencia::Ciencias Básicas::Facultad de Ciencias::Escuela de BiologíaUCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Agroalimentarias::Jardín Botánico Lankester (JBL

Generic realignments in Maxillariinae (Orchidaceae)

Un reciente análisis filogenético de cuatro regiones de ADN para ca. 354 especies de la subtribu Maxillariinae indican fuertemente que el género Maxillaria, en su circunscripción tradicional, es altamente polifilético. Presentamos una nueva clasificación filogenética para Maxillariinae que reconoce 17 géneros. Los cambios necesarios incluyen: 1) la resurrección de los géneros Camaridium, Heterotaxis, y Ornithidium; 2) el reconocimiento de los recientes segregados genéricos Brasiliorchis (=Maxillaria sección Repentes), Christensonella (=Maxillaria sección Urceolatae), Nitidobulbon (en prensa), y una Sauvetrea recircunscrita (=Maxillaria sección Trigonae); 3) la adopción de los nuevos géneros Inti (=Maxillaria sección Polyphyllae), Mapinguari, Maxillariella (=Maxillaria secciones Ebulbes y Erectae), y Rhetinantha; 4) transferencias de Maxillaria sección Reflexae a Ornithidium, y Maxillaria sección Rufescens a Mormolyca; y 5) puesta en sinonimia de los géneros Adamanthus, Pseudomaxillaria, Psittacoglossum y Sepalosaccus (bajo Camaridium), Anthosiphon (bajo Cryptocentrum), Chrysocycnis (bajo Mormolyca), Dicrypta, Marsupiaria y Pentulops (bajo Heterotaxis), y Laricorchis, Neo-Urbania, y Siagonanthus (bajo Ornithidium). Algunos sinónimos nuevos al nivel de especie también son presentados.A recent phylogenetic analysis of four DNA regions for ca. 354 species of core Maxillariinae strongly indicate that the genus Maxillaria, as traditionally circumscribed, is grossly polyphyletic. We present a new phylogenetic classification for core Maxillariinae that recognizes 17 genera. Necessary realignments include: 1) resurrection of the genera Camaridium, Heterotaxis, and Ornithidium; 2) recognition of the recent segregates Brasiliorchis (=Maxillaria sect. Repentes), Christensonella (=Maxillaria sect. Urceolatae), Nitidobulbon (in press), and a recircumscribed Sauvetrea (=Maxillaria sect. Trigonae); 3) adoption of the new genera Inti (=Maxillaria sect. Polyphyllae), Mapinguari, Maxillariella (=Maxillaria sections Ebulbes and Erectae), and Rhetinantha; 4) transfers from Maxillaria sect. Reflexae to Ornithidium, and Maxillaria sect. Rufescens to Mormolyca; and 5) synonymizing of the genera Adamanthus, Pseudomaxillaria, Psittacoglossum, and Sepalosaccus (under Camaridium), Anthosiphon (under Cryptocentrum), Chrysocycnis (under Mormolyca), Dicrypta, Marsupiaria, and Pentulops (under Heterotaxis), and Laricorchis, Neo-urbania, and Siagonanthus (under Ornithidium). Some new synonyms at the specific level are also presented.National Science Foundation/[DEB-0234064]/NSF/Estados UnidosFundação de Amparo à Pesquisa do Estado de São Paulo/[01/08958-1]/FAPESP/BrasilConsejo Nacional de Ciencia y Tecnología/[]/CONACYT/MéxicoRoyal Botanic Gardens, Kew/[]//InglaterraAmerican Orchid Society/[]/AOS/Estados UnidosUCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Agroalimentarias::Jardín Botánico Lankester (JBL

Preliminary molecular phylogenetics of Sobralia and relatives (Orchidaceae: Sobralieae)

With over 200 species, the orchid tribe Sobralieae is a major constituent of the Neotropical flora. As currently circumscribed, the tribe includes four genera: Elleanthus, Epilyna, Sertifera, and Sobralia. Most species of these four genera typically produce long, cane-like stems but differ drastically in flower size and inflorescence structure. DNA sequence data support the monophyly of Elleanthus, Epilyna, and Sertifera but not Sobralia, which is a polyphyletic assemblage traditionally placed together due to relatively large flower size. Details of inflorescence structure provide characters that can easily distinguish the different clades of Sobralia. The misleading characteristic of flower size is probably due to at least several shifts in pollination syndrome within the tribe. With few exceptions, species of Sobralia predominantly offer no reward and are pollinated by bees. Elleanthus and Sertifera are small-flowered and mostly pollinated by hummingbirds with legitimate rewards. Nothing is known of pollination in Epilyna. Understanding the evolution of shifts in pollination syndrome will require more empirical observations of pollination within Sobralieae. In addition, increased taxon sampling and improved phylogenetic resolution are needed before generic realignments are made.Con más de 200 especies, la tribu de orquídeas Sobralieae es un componente importante de la riqueza florística de los neotrópicos. Actualmente esta tribu está constituída por cuatro géneros: Elleanthus, Epilyna, Sertifera, y Sobralia. Las plantas de éstos cuatro géneros generalmente producen tallos largos como cañas, pero difieren en forma drástica en el tamaño de la flor y la estructura de las inflorescencias. Datos de ADN apoyan la monofilia de Elleanthus, Epilyna, y Sertifera, pero no de Sobralia. Sobralia es un ensamblaje polifilético, tradicionalmente circunscrito por el gran tamaño de sus flores. Los detalles de la morfología floral y la posición de la inflorescencia proporcionan caracteres que fácilmente permiten distinguir los diferentes clados de Sobralia. El tamaño de la flor y ciertas otras características superficiales probablemente han sufrido cambios evolutivos en respuesta a cambios en el síndrome de polinización dentro de la tribu. La mayoría de las especies de Sobralia no ofrecen ninguna recompensa y son polinizadas por abejas en busca de néctar. Elleanthus y Sertifera tienen flores pequeñas que aparentemente son polinizadas por colibríes, en estos dos géneros las flores ofrecen néctar. No se conoce nada sobre la polinización de Epilyna. Mas observaciones empíricas de los polinizadores de Sobralieae son necesarias para entender la evolución de los síndromes de polinización, y requerirá un mayor muestreo de especies y una mejor resolución filogenética antes de realizar recircumscripciones genéricas.National Science Foundation/[DEB-234064]/NSF/Estados UnidosUCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Agroalimentarias::Jardín Botánico Lankester (JBL

Generic realignments in Maxillariinae (Orchidaceae): Corrigenda et adenda

UCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Agroalimentarias::Jardín Botánico Lankester (JBL

Data from: Preliminary molecular phylogenetics of Sobralia and relatives (Orchidaceae: Sobralieae)

With over 200 species, the orchid tribe Sobralieae is a major constituent of the Neotropical flora. As currently circumscribed, the tribe includes four genera: Elleanthus, Epilyna, Sertifera, and Sobralia. Most species of these four genera typically produce long, cane-like stems but differ drastically in flower size and inflorescence structure. DNA sequence data support the monophyly of Elleanthus, Epilyna, and Sertifera but not Sobralia, which is a polyphyletic assemblage traditionally placed together due to relatively large flower size. Details of inflorescence structure provide characters that can easily distinguish the different clades of Sobralia. The misleading characteristic of flower size is probably due to at least several shifts in pollination syndrome within the tribe. With few exceptions, species of Sobralia predominantly offer no reward and are pollinated by bees. Elleanthus and Sertifera are small-flowered and mostly pollinated by hummingbirds with legitimate rewards. Nothing is known of pollination in Epilyna. Understanding the evolution of shifts in pollination syndrome will require more empirical observations of pollination within Sobralieae. In addition, increased taxon sampling and improved phylogenetic resolution are needed before generic realignments are made

Sobralieae3gene

Nexus matrix of nrITS, trnS-G, and ycf1 sequences of various Sobralieae (Orchidaceae

Data from: Primer development for the plastid region ycf1 in Annonaceae and other magnoliids

PREMISE OF THE STUDY: Primers were developed for a portion of the ycf1 plastid gene in magnoliid taxa to investigate the utility of ycf1 in phylogenetic analyses. METHODS AND RESULTS: Twenty-six species across six families within the magnoliid group (Canellales, Piperales, Laurales, and Magnoliales) were sampled to examine the ability to amplify ycf1. Additionally, 29 accessions of Asimina and Deeringothamnus (Annonaceae) were sequenced to assess levels of variation in ycf1 compared to matK and trnL-F. CONCLUSIONS: Results indicate that ycf1 is easily amplifi ed and sequenced. In Annonaceae, ycf1 provides more informative phylogenetic characters than commonly used markers such as matK and trnL-F

Annonaceae ycf1

Nexus file of ycf1 sequences of various Annonaceae

Data from: Primer development for the plastid region ycf1 in Annonaceae and other magnoliids

PREMISE OF THE STUDY: Primers were developed for a portion of the ycf1 plastid gene in magnoliid taxa to investigate the utility of ycf1 in phylogenetic analyses. METHODS AND RESULTS: Twenty-six species across six families within the magnoliid group (Canellales, Piperales, Laurales, and Magnoliales) were sampled to examine the ability to amplify ycf1. Additionally, 29 accessions of Asimina and Deeringothamnus (Annonaceae) were sequenced to assess levels of variation in ycf1 compared to matK and trnL-F. CONCLUSIONS: Results indicate that ycf1 is easily amplifi ed and sequenced. In Annonaceae, ycf1 provides more informative phylogenetic characters than commonly used markers such as matK and trnL-F