Defoliation symptoms on trees planted at a restoration site in Sabah, Malaysia

A study on defoliation of selected tree species was conducted at a forest restoration site located at Species Demo Plot in Luasong, Tawau Sabah. The study site is part of the INIKEA Forest Rehabilitation Project managed by Yayasan Sabah. The objective of this study was to determine the type and variation of defoliation symptoms observed on the foliage of eight to ten years old trees of Dipterocarpus conformis (KBK), Diospyros sp. (KMLM), Dryobalanops lanceolata (KPJ), Pentace laxiflora (TDH), Pentace adenophora (TDB) and Hopea ferruginea (SMKU) that were planted by line planting method. Sampling was conducted in July 2017 for a period of one week. Four replicates for each tree species was sampled. Defoliation symptoms were assessed on the crown of the trees. The mean defoliation symptom occurrence was calculated to represent each tree species. The mean defoliation symptoms among the six tree species were tested by using the Chi-square statistical analysis. Defoliation symptom occurrence across the six species of trees was categorized as herbivory, egg cases, leaf miners, leaf rollers, and galls. The highest percentage of defoliation symptom was herbivory (44.71%), followed by both egg cases and leaf miners (24.71% respectively), and only 1.18% of galls, which was the lowest. The highest mean defoliation symptom occurrence was recorded on D. lanceolata, with a mean of 4.75 occurrence, while the lowest mean defoliation symptom occurrence of 3.00 was recorded on both Diospyros sp. and H. ferruginea. Results of the Chi-square analysis indicated no significant difference (p>0.05) in the mean occurrence of defoliation symptoms across the six species of trees

Multiband tight-binding theory of disordered ABC semiconductor quantum dots: Application to the optical properties of alloyed CdZnSe nanocrystals

Zero-dimensional nanocrystals, as obtained by chemical synthesis, offer a broad range of applications, as their spectrum and thus their excitation gap can be tailored by variation of their size. Additionally, nanocrystals of the type ABC can be realized by alloying of two pure compound semiconductor materials AC and BC, which allows for a continuous tuning of their absorption and emission spectrum with the concentration x. We use the single-particle energies and wave functions calculated from a multiband sp^3 empirical tight-binding model in combination with the configuration interaction scheme to calculate the optical properties of CdZnSe nanocrystals with a spherical shape. In contrast to common mean-field approaches like the virtual crystal approximation (VCA), we treat the disorder on a microscopic level by taking into account a finite number of realizations for each size and concentration. We then compare the results for the optical properties with recent experimental data and calculate the optical bowing coefficient for further sizes

An Integrated TCGA Pan-Cancer Clinical Data Resource to Drive High-Quality Survival Outcome Analytics

For a decade, The Cancer Genome Atlas (TCGA) program collected clinicopathologic annotation data along with multi-platform molecular profiles of more than 11,000 human tumors across 33 different cancer types. TCGA clinical data contain key features representing the democratized nature of the data collection process. To ensure proper use of this large clinical dataset associated with genomic features, we developed a standardized dataset named the TCGA Pan-Cancer Clinical Data Resource (TCGA-CDR), which includes four major clinical outcome endpoints. In addition to detailing major challenges and statistical limitations encountered during the effort of integrating the acquired clinical data, we present a summary that includes endpoint usage recommendations for each cancer type. These TCGA-CDR findings appear to be consistent with cancer genomics studies independent of the TCGA effort and provide opportunities for investigating cancer biology using clinical correlates at an unprecedented scale. Analysis of clinicopathologic annotations for over 11,000 cancer patients in the TCGA program leads to the generation of TCGA Clinical Data Resource, which provides recommendations of clinical outcome endpoint usage for 33 cancer types

Polystyrene cellulose fiber composites: effect of the processing conditions on mechanical and dynamic mechanical properties

ABSTRACT The usage of natural fibers on the composites development has grown rapidly in the recent years due to the fibers plentiful availability, renewable source, low density and biodegradability. However, there are some drawbacks, for instance, the fiber dispersion on a polyolefin matrix. In this work, the influence of processing speed on the mechanical and dynamic mechanical properties of polystyrene (PS) filled with cellulose fiber composites was investigated. The composites were processed on a twin-screw co-rotating extruder, using screw speeds of 200 rpm, 400 rpm and 600 rpm. The dynamic mechanical properties and the mechanical properties were investigated as a function of fiber content. The composites processed on a screw speed of 400 rpm had presented an increase on flexural and impact strength, compared to the composites processed at 200 rpm. The flexural and storage modulus had increased when increasing the fiber content, as well as increasing the processing speed. The greater fiber dispersion obtained at a screw speed of 400 rpm hinders the agglomeration arrangement and distributes the fibers more equally on the matrix. The increase on processing speed probably generates a fiber size reduction, increasing the fiber superficial area and generating a greater contact with the matrix as well. Therefore, the efforts transference of matrix to fibers is improved, originating an increase on the evaluated properties

Large scale meta-analysis characterizes genetic architecture for common psoriasis associated variants

Psoriasis is a complex disease of skin with a prevalence of about 2%. We conducted the largest meta-analysis of genome-wide association studies (GWAS) for psoriasis to date, including data from eight different Caucasian cohorts, with a combined effective sample size >39,000 individuals. We identified 16 additional psoriasis susceptibility loci achieving genome-wide significance, increasing the number of identified loci to 63 for European-origin individuals. Functional analysis highlighted the roles of interferon signalling and the NFκB cascade, and we showed that the psoriasis signals are enriched in regulatory elements from different T cells (CD8+ T-cells and CD4+ T-cells including TH0, TH1 and TH17). The identified loci explain ∼28% of the genetic heritability and generate a discriminatory genetic risk score (AUC=0.76 in our sample) that is significantly correlated with age at onset (p=2 × 10−89). This study provides a comprehensive layout for the genetic architecture of common variants for psoriasis

Driver Fusions and Their Implications in the Development and Treatment of Human Cancers.

Gene fusions represent an important class of somatic alterations in cancer. We systematically investigated fusions in 9,624 tumors across 33 cancer types using multiple fusion calling tools. We identified a total of 25,664 fusions, with a 63% validation rate. Integration of gene expression, copy number, and fusion annotation data revealed that fusions involving oncogenes tend to exhibit increased expression, whereas fusions involving tumor suppressors have the opposite effect. For fusions involving kinases, we found 1,275 with an intact kinase domain, the proportion of which varied significantly across cancer types. Our study suggests that fusions drive the development of 16.5% of cancer cases and function as the sole driver in more than 1% of them. Finally, we identified druggable fusions involving genes such as TMPRSS2, RET, FGFR3, ALK, and ESR1 in 6.0% of cases, and we predicted immunogenic peptides, suggesting that fusions may provide leads for targeted drug and immune therapy