Genome-wide identification of aquaporin encoding genes in Brassica oleracea and their phylogenetic sequence comparison to Brassica crops and Arabidopsis

Aquaporins (AQPs) are essential channel proteins that regulate plant water homeostasis and the uptake and distribution of uncharged solutes such as metalloids, urea, ammonia and carbon dioxide. Despite their importance as crop plants, little is known about AQP gene and protein function in cabbage (Brassica oleracea) and other Brassica species. The recent releases of the genome sequences of B. oleracea and B. rapa allow comparative genomic studies in these species to investigate the evolution and features of Brassica genes and proteins.In this study, we identified all AQP genes in B. oleracea by a genome-wide survey. In total, 67 genes of four plant AQP subfamilies were identified. Their full-length gene sequences and locations on chromosomes and scaffolds were manually curated. The identification of six additional full-length AQP sequences in the B. rapa genome added to the recently published AQP protein family of this species. A phylogenetic analysis of AQPs of A. thaliana, B. oleracea, B. rapa allowed us to follow AQP evolution in closely related species and to systematically classify and (re-) name these isoforms. Thirty-three groups of AQP-orthologous genes were identified between B. oleracea and Arabidopsis and their expression was analyzed in different organs. The two selectivity filters, gene structure and coding sequences were highly conserved within each AQP subfamily while sequence variations in some introns and untranslated regions were frequent. These data suggest a similar substrate selectivity and function of Brassica AQPs compared to Arabidopsis orthologs. The comparative analyses of all AQP subfamilies in three Brassicaceae species give initial insights into AQP evolution in these taxa. Based on the genome-wide AQP identification in B. oleracea and the sequence analysis and reprocessing of Brassica AQP information, our dataset provides a sequence resource for further investigations of the physiological and molecular functions of Brassica crop AQPs

Molecular divergence and evolutionary relationships among Aemodogryllinae from Southern China, Laos and Thailand (Orthoptera, Rhaphidophoridae)

In this study we screened for sequence polymorphisms at one mitochondrial (Cytochrome Oxidase subunit I) and one nuclear (Internal Transcribed Spacer 1) gene 33 populations of the cave cricket genera Diestrammena, Paradiestrammena, Eutachycines and Paratachycines from Southern China (three Provinces: Jiangxi, Guangdong and Guizhou), Laos and Thailand. Twenty-five of these populations were assigned to the genus Diestrammena, subgenus Gymnaeta, while the remaining eight belonged to the genera Paradiestrammena (3), Eutachycines (3) and Paratachycines (2). The degree of troglomorphosis varies among them; some populations are blind and depigmented, some have fully developed eyes, while some others show intermediate characteristics. Phylogenetic searches carried out on the two gene partitions separately revealed multiple cases of incongruence but only three of them were statistically significant and were hence removed from the subsequent analyses based on the combined data set. Our data do not support Diestrammena as monophyletic while representatives of Paradiestrammena, Eutachycines and Paratachycines were clustered together; the validity of some nominal species was confirmed molecularly but we also revealed a large number of deeply divergent lineages. Populations with the same degree of troglomorphosis do not cluster together. We identified five major clades; divergence among them (and in a few circumstances also within them) is always higher than the DNA barcode threshold for intraspecific comparisons in insects. In two circumstances, the same clades (III and V) are co-distributed in geographically distinct areas (Provinces). This geographical distribution might be explained by envisioning an evolutionary scenario based on zones of secondary admixture following epigean dispersal among lineages that diverged in allopatry

Former Training Relieves the Later Development of Behavioral Inflexibility in an Animal Model Overexpressing the Dopamine Transporter

A range of dopamine-dominating neuropsychiatric disorders present with cognitive deficits. In accordance, the dopamine transporter overexpressing rat model (DAT-tg rat) displays cognitive deficits by means of behavioral inflexibility and learning disabilities. It remains to be investigated when cognitive deficits emerge, due to the inherent DA irregularities, during the life course of the DAT-tg rat and what may relieve symptoms. The Morris water maze (MWM) was used to assess cognitive abilities in three cohorts of DAT-tg rats. In the first cohort, the development of cognitive deficits was assessed by repeatedly testing animals in the MWM at postnatal day (PND) 35, 60, and 90. In the second and third cohort, pharmacological interventions and transcranial direct current stimulation (tDCS) were tested in adult animals to understand what drives, and thus relieves, the deficits. Minor differences were observed between DAT-tg rats and control rats at PND 35 and 60, whereas cognitive deficits fully emerged at PND 90. A high dosage of methylphenidate diminished both behavioral inflexibility and improved learning abilities in adult rats. Interestingly, rats subjected early in life to the MWM also displayed improved behavioral flexibility as compared to rats naïve to the paradigm. Cognitive deficits gradually develop over time and fully emerge in adulthood. Pharmacological modulation of the ubiquitous DAT overexpression overall improves deficits in adult rats, whereas early training decreases later development of behavioral inflexibility. Thus, former training may constitute a preventive avenue that alters some aspects of cognitive deficits resulting from inherent DA abnormalities

Annual report 2015

Accessions considered in the study. Overview of the material considered in this study. For all materials, the GenBank identifier, the accession and species name as used in this study (Species) as well as their species synonyms used in the donor seed banks or in the NCBI GenBank (Material source/Reference) are provided. The genome symbol, and the country of origin, where the material was originally collected are given. The ploidy level measured in the scope of this study and the information if a herbarium voucher could be deposited in the herbarium of IPK Gatersleben (GAT) is given. Genomic formulas of tetraploids and hexploids are given as “female x male parent”. The genomes of Aegilops taxa follow Kilian et al. [74] and Li et al. [84]. Genome denominations for Hordeum follow Blattner [107] and Bernhardt [12] for the remaining taxa. (XLS 84 kb

Hop Mice Display Synchronous Hindlimb Locomotion and a Ventrally Fused Lumbar Spinal Cord Caused by a Point Mutation in Ttc26

Identifying the spinal circuits controlling locomotion is critical for unravelling the mechanisms controlling the production of gaits. Development of the circuits governing left-right coordination relies on axon guidance molecules such as ephrins and netrins. To date, no other class of proteins have been shown to play a role during this process. Here, we have analyzed hop mice, which walk with a characteristic hopping gait using their hindlimbs in synchrony. Fictive locomotion experiments suggest that a local defect in the ventral spinal cord contributes to the aberrant locomotor phenotype. Hop mutant spinal cords had severe morphologic defects, including the absence of the ventral midline and a poorly defined border between white and gray matter. The hop mice represent the first model where, exclusively found in the lumbar domain, the left and right components of the central pattern generators (CPGs) are fused with a synchronous hindlimb gait as a functional consequence. These defects were associated with abnormal developmental processes, including a misplaced notochord and reduced induction of ventral progenitor domains. Whereas the underlying mutation in hop mice has been suggested to lie within the Ttc26 gene, other genes in close vicinity have been associated with gait defects. Mouse embryos carrying a CRISPR replicated point mutation within Ttc26 displayed an identical morphologic phenotype. Thus, our data suggest that the assembly of the lumbar CPG network is dependent on fully functional TTC26 protein

Development of a network of genetic reserves for wild celery in Germany (GE-Sell)

Die Technik des genetischen Erhaltungsgebiets ist ein anwendungsbereites Verfahren zur In-situ-Erhaltung von wildlebenden Verwandten unserer Kulturpflanzen. Bei dem Verfahren wird die dynamische Erhaltung von Populationen, die in ihren natürlichen Lebensräumen Evolutionsprozessen ausgesetzt sind, mit der statischen Erhaltung pflanzengenetischer Ressourcen in Genbanken kombiniert und somit die nachhaltige Nutzung dieser Arten ermöglicht. Im Modell- und Demonstrationsvorhaben "Genetische Erhaltungsgebiete für Wildselleriearten (Apium und Helosciadium) als Bestandteil eines Netzwerks genetischer Erhaltungsgebiete in Deutschland" (GESell) wurden wissenschaftliche und organisatorische Fragestellungen zur Umsetzung dieser Technik bearbeitet. Ziel des Projekts war die modellhafte Einrichtung von 45 genetischen Erhaltungsgebieten (GenEG) für Wildselleriearten und der Aufbau eines bundesweiten Netzwerks aus lokalen Akteuren. Zur Identifizierung der GenEG wurde das monografische Verfahren angewendet. Für die vier in Deutschland vorkommenden Wildselleriearten wurden zum Projektstart im Jahr 2015 aus 2400 Fundortdaten 322 Standorte für Präsenzkontrollen ausgewählt. Im Anschluss wurden für rund 100 möglichst vitale und ungefährdete Vorkommen, die sich über verschiedene Naturräume und Habitate verteilen, genetische Diversitätsanalysen durchgeführt. Anhand der Kartierungs- und Analyseergebnisse wählte das Projektteam zwischen 11 und 15 Vorkommen pro Art aus, die insgesamt die innerartliche Vielfalt der jeweiligen Arten bestmöglich repräsentieren. Für diese Vorkommen wurden die Einrichtung und ein langfristiges Management der GenEG in Zusammenarbeit mit lokalen Akteuren angestrebt. Bis zum April 2020 wurden bereits 15 GenEG eingerichtet.The genetic reserve conservation technique is a ready-to-use procedure for in situ conservation of crop wild relatives. The approach combines the dynamic conservation of populations exposed to evolutionary processes in their natural habitats with the static conservation of plant genetic resources in gene banks, thus enabling the sustainable use of these species. In the model and demonstration project "Genetic reserves for wild celery species (Apium and Helosciadium) as part of a network of genetic reserves in Germany" (GE-Sell) scientific and organisational aspects of the implementation of genetic reserves were investigated. The aim of the project was the establishment of 45 genetic reserves for wild celery species and the establishment of a nationwide network of local stakeholders. The monographic approach was used to identify the genetic reserves. For the four wild celery species occurring in Germany, around 350 occurrences were selected from 2400 known sites for the verification of these occurrences at the project start in 2015. Thereafter, genetic diversity analyses were carried out for approximately 100 occurrences that are as vital as possible, non-endangered and distributed over various ecogeographic regions and habitat types. Based on the survey and analysis results, the project team selected between 11 and 15 occurrences per species, which together represent the intra-species diversity of the respective species best. For these occurrences, the project team aimed at the establishment and long-term management of the genetic reserves in cooperation with local stakeholders. By April 2020, 15 genetic reserves had already been established