Simplified three-dimensional tissue clearing and incorporation of colorimetric phenotyping.

Tissue clearing methods promise to provide exquisite three-dimensional imaging information; however, there is a need for simplified methods for lower resource settings and for non-fluorescence based phenotyping to enable light microscopic imaging modalities. Here we describe the simplified CLARITY method (SCM) for tissue clearing that preserves epitopes of interest. We imaged the resulting tissues using light sheet microscopy to generate rapid 3D reconstructions of entire tissues and organs. In addition, to enable clearing and 3D tissue imaging with light microscopy methods, we developed a colorimetric, non-fluorescent method for specifically labeling cleared tissues based on horseradish peroxidase conversion of diaminobenzidine to a colored insoluble product. The methods we describe here are portable and can be accomplished at low cost, and can allow light microscopic imaging of cleared tissues, thus enabling tissue clearing and imaging in a wide variety of settings

Laser Generation and Detection of Surface Acoustic Waves Using Gas-Coupled Laser Acoustic Detection

Laser generation and detection of ultrasound has the advantage of requiring no mechanical contact with the materials under investigation. We previously reported [1] laser-based measurements on Lamb waves in graphite/polymer composite laminates using a confocal Fabry-Perot interferometer for detection. Related work by other groups includes air-coupled detection of Lamb waves in similar composites using capacitive transducers [2,3] and interferometric detection of Lamb waves in paper [4]. Our earlier work has been extended using Gas-Coupled Laser Acoustic Detection (GCLAD), an economical alternative laser-based method which has the additional advantage that the detection laser beam is not reflected from the sample surface. GCLAD is thus particularly useful for materials with surfaces of poor optical quality. We demonstrate below that the combination of laser generation and GCLAD can be used to obtain well-resolved surface-acoustic waves (SAWs) in a variety of materials, including metals, paper, thin films, and composite pre-preg tape. We also show some preliminary SAW scans obtained with laser generation and GCLAD using metallic samples. Each pixel in the scans represents the strength of a SAW passing through a portion of the sample with an area of about 1 cm2. Scans of this type offer the possibility of economical testing of large sample areas, potentially on-line in a manufacturing environment

Pentaquark Θ∗\Theta^* States in {27} Baryon Multiplet from Chiral Soliton Model

We estimate the mass and the width of pentaquark $\Theta^*$ states in the 27-plet from chiral soliton models. The calculations show that the mass of $\Theta^*$ is about 1.60 GeV and the width for the process $\Theta^*\to {KN}$ is less than 43 MeV. We also discuss the search for the existence of $\Theta^*$ states in physical processes.Comment: 10 latex pages, 1 figure. Revised version to appear in PL

Productions of X(1835) as baryonium with sizable gluon content

The X(1835) has been treated as a baryonium with sizable gluon content, and to be almost flavor singlet. This picture allows us to rationally understand X(1835) production in $J/\psi$ radiative decays, and its large couplings with $p\bar{p}$, $\eta^{\prime}\pi\pi$. The processes $\Upsilon(1S)\to \gamma X(1835)$ and $J/\psi\to \omega X(1835)$ have been examined. It has been found that $Br(\Upsilon(1S)\to\gamma X(1835))Br(X(1835)\to p\bar{p})<6.45\times10^{-7}$, which is compatible with CLEO's recently experimental result (Phys.Rev.$\mathbf{D73}$ (2006) 032001;hep-ex/0510015). The branching fractions of $Br(J/\psi\to\omega X(1835))$, $Br(J/\psi\to\rho X(1835))$ with $X(1835)\to p\bar{p}$ and $X(1835)\to\eta^{\prime}\pi^{+}\pi^{-}$ have been estimated by the quark-pair creation model. We show that they are heavily suppressed, so the signal of X(1835) is very difficult, if not impossible, to be observed in these processes. The experimental checks for these estimations are expected. The existence of the baryonium nonet is conjectured, and a model independent derivation of their production branching fractions is presented.Comment: 21 pages, 4 figure

The impact of elbow and knee joint lesions on abnormal gait and posture of sows

<p>Abstract</p> <p>Background</p> <p>Joint lesions occur widespread in the Danish sow population and they are the most frequent cause for euthanasia. Clinically, it is generally impossible to differentiate between various types of non-inflammatory joint lesions. Consequently, it is often necessary to perform a post mortem examination in order to diagnose these lesions. A study was performed in order to examine the relation of abnormal gait and posture in sows with specific joint lesions, and thereby obtaining a clinical diagnostic tool, to be used by farmers and veterinarians for the evaluation of sows with joint problems.</p> <p>Methods</p> <p>The gait, posture and lesions in elbow- and knee joints of 60 randomly selected sows from one herd were scored clinically and pathologically. Associations between the scorings were estimated.</p> <p>Results</p> <p>The variables 'fore- and hind legs turned out' and 'stiff in front and rear' were associated with lesions in the elbow joint, and the variables 'hind legs turned out' and 'stiff in rear' were associated with lesions in the knee joint.</p> <p>Conclusion</p> <p>It was shown that specified gait and posture variables reflected certain joint lesions. However, further studies are needed to strengthen and optimize the diagnostic tool.</p

Histone deacetylase adaptation in single ventricle heart disease and a young animal model of right ventricular hypertrophy.

BackgroundHistone deacetylase (HDAC) inhibitors are promising therapeutics for various forms of cardiac diseases. The purpose of this study was to assess cardiac HDAC catalytic activity and expression in children with single ventricle (SV) heart disease of right ventricular morphology, as well as in a rodent model of right ventricular hypertrophy (RVH).MethodsHomogenates of right ventricle (RV) explants from non-failing controls and children born with a SV were assayed for HDAC catalytic activity and HDAC isoform expression. Postnatal 1-day-old rat pups were placed in hypoxic conditions, and echocardiographic analysis, gene expression, HDAC catalytic activity, and isoform expression studies of the RV were performed.ResultsClass I, IIa, and IIb HDAC catalytic activity and protein expression were elevated in the hearts of children born with a SV. Hypoxic neonatal rats demonstrated RVH, abnormal gene expression, elevated class I and class IIb HDAC catalytic activity, and protein expression in the RV compared with those in the control.ConclusionsThese data suggest that myocardial HDAC adaptations occur in the SV heart and could represent a novel therapeutic target. Although further characterization of the hypoxic neonatal rat is needed, this animal model may be suitable for preclinical investigations of pediatric RV disease and could serve as a useful model for future mechanistic studies

Deep Inelastic Scattering from off-Shell Nucleons

We derive the general structure of the hadronic tensor required to describe deep-inelastic scattering from an off-shell nucleon within a covariant formalism. Of the large number of possible off-shell structure functions we find that only three contribute in the Bjorken limit. In our approach the usual ambiguities encountered when discussing problems related to off-shellness in deep-inelastic scattering are not present. The formulation therefore provides a clear framework within which one can discuss the various approximations and assumptions which have been used in earlier work. As examples, we investigate scattering from the deuteron, nuclear matter and dressed nucleons. The results of the full calculation are compared with those where various aspects of the off-shell structure are neglected, as well as with those of the convolution model.Comment: 36 pages RevTeX, 9 figures (available upon request), ADP-93-210/T128, PSI-PR-93-13, accepted for publication in Physical Review

Soil methane sink capacity response to a long-term wildfire chronosequence in Northern Sweden

Boreal forests occupy nearly one fifth of the terrestrial land surface and are recognised as globally important regulators of carbon (C) cycling and greenhouse gas emissions. Carbon sequestration processes in these forests include assimilation of CO2 into biomass and subsequently into soil organic matter, and soil microbial oxidation of methane (CH4). In this study we explored how ecosystem retrogression, which drives vegetation change, regulates the important process of soil CH4 oxidation in boreal forests. We measured soil CH4 oxidation processes on a group of 30 forested islands in northern Sweden differing greatly in fire history, and collectively representing a retrogressive chronosequence, spanning 5000 years. Across these islands the build-up of soil organic matter was observed to increase with time since fire disturbance, with a significant correlation between greater humus depth and increased net soil CH4 oxidation rates. We suggest that this increase in net CH4 oxidation rates, in the absence of disturbance, results as deeper humus stores accumulate and provide niches for methanotrophs to thrive. By using this gradient we have discovered important regulatory controls on the stability of soil CH4 oxidation processes that could not have not been explored through shorter-term experiments. Our findings indicate that in the absence of human interventions such as fire suppression, and with increased wildfire frequency, the globally important boreal CH4 sink could be diminished